Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 0.0e+00 1269.2 666 100.0
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 0.0e+00 1269.2 666 100.0
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 4.5e-286 987.6 671 78.8
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 5.0e-285 984.2 676 77.2
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 2.5e-284 981.9 677 79.8
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 8.0e-283 976.9 675 78.7
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.3e-282 975.3 676 78.7
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 6.8e-282 973.8 676 78.8
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 9.8e-281 969.9 674 78.2
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 4.9e-280 967.6 667 79.2
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 5.4e-279 964.1 663 78.7
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.8e-277 958.0 703 73.0
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 4.7e-275 951.0 671 76.0
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 1.0e-274 949.9 671 77.2
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 8.3e-272 940.3 674 76.6
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 3.3e-268 928.3 674 76.6
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.3e-268 928.3 638 78.4
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 7.3e-268 927.2 695 74.8
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 3.6e-267 924.9 677 76.4
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 6.2e-267 924.1 677 76.5
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 6.2e-267 924.1 684 74.1
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.2e-265 919.8 671 76.9
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 9.8e-265 916.8 671 75.3
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 2.4e-263 912.1 670 74.5
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 2.4e-263 912.1 669 75.2
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 1.0e-261 906.7 633 77.9
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 1.0e-261 906.7 671 74.7
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 1.7e-261 906.0 668 74.6
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.6e-259 899.4 676 73.2
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.8e-258 896.0 677 74.4
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 1.4e-255 886.3 668 74.4
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 3.2e-255 885.2 622 79.6
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 4.1e-255 884.8 671 74.2
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 4.6e-254 881.3 658 75.4
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 7.8e-254 880.6 731 69.2
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 3.9e-253 878.2 602 78.9
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 4.3e-252 874.8 666 74.5
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.6e-251 872.8 669 74.1
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.2e-250 867.8 644 74.7
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 7.6e-249 864.0 673 73.6
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 9.2e-247 857.1 674 71.2
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 2.7e-246 855.5 654 73.5
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 1.7e-245 852.8 674 68.4
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.7e-245 852.8 675 71.0
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 1.7e-245 852.8 796 64.2
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 1.9e-244 849.4 675 72.3
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.1e-242 843.6 682 70.7
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.8e-242 842.8 667 70.6
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 2.4e-242 842.4 611 76.3
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.5e-241 839.7 639 72.5
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 3.4e-241 838.6 673 71.8
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 7.6e-241 837.4 678 69.2
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.7e-237 826.2 671 69.4
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.7e-237 826.2 685 68.5
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 6.6e-237 824.3 683 68.7
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 9.6e-236 820.5 618 73.6
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 1.8e-234 816.2 674 69.9
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 9.3e-231 803.9 671 67.1
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 7.9e-230 800.8 676 67.6
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 3.9e-229 798.5 578 77.2
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.8e-226 789.6 661 68.5
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 2.4e-226 789.3 557 79.0
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 5.8e-225 784.6 641 70.2
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 9.9e-225 783.9 648 68.7
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.8e-224 781.9 595 75.1
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 1.0e-221 773.9 678 64.7
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 3.0e-221 772.3 658 67.6
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 2.5e-220 769.2 657 67.9
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.3e-219 766.9 676 66.6
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.6e-219 766.5 692 64.5
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 3.1e-218 762.3 667 66.7
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 2.1e-214 749.6 665 66.0
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 3.5e-214 748.8 739 59.1
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 1.0e-213 747.3 669 65.6
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.8e-213 746.5 667 65.5
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.8e-213 746.5 667 65.5
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 2.3e-213 746.1 657 66.8
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 5.7e-212 741.5 544 75.6
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 7.4e-212 741.1 651 67.3
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 1.6e-211 740.0 676 65.1
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 6.3e-211 738.0 667 64.9
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 9.0e-210 734.2 666 64.9
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 9.0e-210 734.2 666 64.9
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 9.0e-210 734.2 650 65.7
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 4.5e-209 731.9 667 64.6
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 4.5e-209 731.9 667 64.6
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 8.5e-208 727.6 525 75.0
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 3.0e-205 719.2 694 63.0
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 2.5e-204 716.1 697 62.4
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 5.3e-202 708.4 497 78.1
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.6e-198 696.8 611 66.1
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 7.4e-196 688.0 683 58.0
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 9.7e-196 687.6 595 64.7
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 7.9e-190 667.9 675 57.6
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 6.7e-189 664.8 669 58.9
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 5.9e-185 651.7 653 60.9
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 6.5e-184 648.3 451 79.2
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.2e-183 645.6 618 61.0
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.4e-181 640.6 674 56.1
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.8e-181 640.2 606 62.9
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.0e-176 624.4 720 52.2
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.4e-170 603.2 665 55.3
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 3.5e-169 599.4 468 67.5
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.3e-160 570.9 413 78.2
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 1.2e-158 564.3 656 55.6
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 2.3e-157 560.1 661 53.3
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 5.2e-149 532.3 615 51.9
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.2e-142 511.1 598 50.3
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 7.1e-138 495.4 436 66.7
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 2.8e-134 483.4 680 48.1
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.1e-129 467.2 594 47.8
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 3.6e-126 456.4 505 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.1e-117 428.3 556 48.0
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 1.2e-108 398.3 683 41.4
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 3.2e-106 390.2 312 77.2
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 2.0e-100 370.9 554 46.6
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 4.6e-97 359.8 283 78.8
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 1.2e-76 292.0 309 60.8
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.6e-76 290.8 297 56.9
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.7e-70 270.4 200 70.5
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 7.0e-69 266.2 179 86.6
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.0e-64 252.3 334 42.2
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 8.8e-64 249.2 309 55.7
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-63 248.4 322 45.3
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.2e-58 230.3 288 42.4
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.6e-55 221.1 289 52.9
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 6.3e-54 216.5 226 66.4
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 9.1e-53 212.6 167 63.5
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 6.6e-51 206.5 193 74.1
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 8.6e-51 206.1 273 51.3
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 8.9e-48 196.1 223 47.1
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.8e-45 188.3 169 65.1
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 2.5e-42 177.9 103 93.2
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 9.2e-37 159.5 83 89.2
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 3.3e-34 151.0 248 39.1
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-24 118.6 89 77.5
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 8.3e-22 109.8 128 42.2
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 9.2e-21 106.3 59 84.7
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 5.1e-19 100.5 73 64.4
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.1e-18 99.4 88 51.1
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.1e-18 99.4 88 51.1
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 1.9e-18 98.6 310 26.8
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 8.1e-17 93.2 175 33.1
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 2.4e-16 91.7 63 65.1
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 8.9e-16 89.7 51 84.3
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.3e-14 85.9 114 50.0
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 1.7e-11 75.5 134 35.1
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 3.9e-11 74.3 59 66.1
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 3.9e-11 74.3 59 66.1
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 8.7e-11 73.2 53 60.4
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 4.3e-10 70.9 103 53.4
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 1.2e-07 62.8 113 37.2
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 5.8e-07 60.5 65 52.3
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 9.9e-07 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.3e-06 59.3 32 90.6
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.2e-06 58.5 34 88.2
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 2.9e-06 58.2 56 58.9
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 4.9e-06 57.4 35 71.4
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 4.9e-06 57.4 171 24.6


User provided reference genes

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