Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 2.1e-269 931.8 466 100.0
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 1.0e-204 716.8 417 89.2
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 4.4e-163 578.6 472 66.7
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 4.5e-131 472.2 476 54.6
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 7.6e-131 471.5 506 53.6
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 1.0e-130 471.1 487 55.0
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 2.5e-129 466.5 484 54.5
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 2.5e-129 466.5 448 58.3
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.6e-128 462.2 467 53.7
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 7.9e-128 461.5 457 56.0
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.0e-127 461.1 450 56.0
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.3e-127 460.7 468 56.4
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.0e-127 459.5 470 54.3
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.0e-127 459.5 484 55.2
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.1e-126 457.6 467 53.7
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.9e-126 456.8 466 53.9
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 7.4e-126 454.9 469 53.9
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 2.2e-125 453.4 463 53.1
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 1.0e-122 444.5 441 56.0
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 5.0e-122 442.2 472 55.3
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 5.5e-121 438.7 472 53.8
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.6e-120 437.2 420 57.9
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 2.1e-120 436.8 474 51.9
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 3.6e-120 436.0 462 54.3
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 1.4e-119 434.1 445 53.5
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 3.9e-119 432.6 423 57.7
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 6.7e-119 431.8 462 53.7
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.7e-117 427.2 408 59.1
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 3.7e-117 426.0 487 51.3
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.4e-116 424.1 455 54.9
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 4.1e-116 422.5 475 49.5
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 1.0e-114 417.9 479 50.1
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.1e-113 414.5 455 52.7
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.9e-113 413.7 475 51.6
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 1.2e-112 411.0 454 52.6
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.2e-112 411.0 448 52.7
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 3.6e-112 409.5 474 48.5
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 6.1e-112 408.7 449 53.2
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 6.7e-111 405.2 470 50.6
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 8.8e-111 404.8 474 52.1
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 4.4e-110 402.5 454 49.8
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.4e-110 402.5 407 55.0
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 9.7e-110 401.4 438 52.1
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 6.3e-109 398.7 447 52.8
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 6.3e-109 398.7 447 52.8
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.1e-108 397.9 438 51.1
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 1.4e-108 397.5 451 49.0
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 1.8e-108 397.1 455 49.0
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 3.8e-106 389.4 447 50.6
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 6.5e-106 388.7 450 47.8
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 1.5e-105 387.5 459 49.5
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 1.1e-102 377.9 492 45.9
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 8.5e-98 361.7 396 51.5
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 1.4e-92 344.4 447 47.4
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 2.1e-88 330.5 469 46.3
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.5e-86 324.3 396 48.7
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 3.0e-79 300.1 436 42.7
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 8.3e-77 292.0 450 39.8
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.2e-72 278.1 343 50.1
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 1.4e-71 274.6 455 39.6
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 2.3e-71 273.9 448 41.5
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.9e-69 266.9 447 40.0
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 7.8e-67 258.8 454 37.4
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.7e-66 257.7 453 39.1
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.9e-65 254.2 434 37.8
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 2.5e-65 253.8 474 36.9
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.6e-64 250.0 445 36.9
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 6.2e-64 249.2 475 34.5
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.4e-63 248.1 318 47.2
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 5.2e-63 246.1 445 36.6
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 7.5e-62 242.3 430 36.7
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 3.2e-60 236.9 439 35.8
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 7.8e-59 232.3 432 34.7
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 1.0e-58 231.9 431 35.7
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 1.7e-58 231.1 431 35.5
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 1.7e-58 231.1 431 35.5
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.7e-58 231.1 437 35.2
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 3.0e-58 230.3 429 34.0
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 3.0e-58 230.3 431 35.5
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 2.5e-57 227.3 441 35.6
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 5.6e-57 226.1 376 38.8
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 7.3e-57 225.7 433 34.2
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 3.6e-56 223.4 432 34.0
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 6.2e-56 222.6 437 35.9
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 8.9e-55 218.8 437 38.0
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.2e-54 218.4 182 59.9
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 5.8e-54 216.1 440 33.4
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 6.4e-53 212.6 437 34.6
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 8.4e-53 212.2 390 36.7
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 1.9e-52 211.1 224 54.0
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.4e-52 210.7 437 34.1
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 5.4e-52 209.5 425 33.9
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 5.4e-52 209.5 408 36.5
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 2.5e-49 200.7 377 35.8
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 7.3e-49 199.1 352 37.8
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 1.6e-48 198.0 432 33.1
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 2.8e-48 197.2 369 36.6
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 6.2e-48 196.1 160 61.2
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.4e-47 194.9 396 35.1
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.4e-47 194.9 361 36.8
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.3e-45 188.3 341 37.0
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 8.4e-45 185.7 444 32.4
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 1.2e-43 181.8 438 32.9
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.6e-43 181.4 187 47.1
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.3e-42 177.6 318 37.7
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 9.6e-41 172.2 371 32.9
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 1.1e-39 168.7 260 43.8
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 2.6e-38 164.1 347 33.7
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 4.4e-38 163.3 376 31.4
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 2.9e-37 160.6 162 47.5
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 6.4e-37 159.5 383 31.9
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.1e-36 158.7 375 30.4
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.1e-36 158.7 435 29.4
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.4e-36 157.5 427 30.0
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 9.3e-36 155.6 376 30.6
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.6e-35 154.8 375 31.2
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 3.5e-35 153.7 208 42.8
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 9.6e-33 145.6 111 61.3
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 8.1e-32 142.5 275 38.5
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 1.4e-31 141.7 306 35.9
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 1.4e-31 141.7 306 35.9
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 3.4e-30 137.1 162 43.8
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.5e-30 136.7 362 30.4
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.2e-29 134.4 362 30.1
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.8e-29 133.7 358 30.4
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 6.4e-29 132.9 387 32.3
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 2.1e-27 127.9 283 32.2
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 4.6e-27 126.7 162 47.5
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.6e-27 126.7 355 31.0
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 2.3e-26 124.4 387 30.5
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 8.7e-26 122.5 163 47.2
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 8.7e-26 122.5 148 46.6
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.1e-25 122.1 159 47.2
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 2.5e-25 120.9 148 45.9
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 1.4e-23 115.2 139 43.9
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 5.8e-22 109.8 287 28.2
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 6.0e-19 99.8 121 39.7
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.3e-18 98.6 119 46.2
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 6.7e-18 96.3 86 57.0
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 8.7e-18 95.9 174 35.6
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.5e-17 95.1 104 48.1
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.5e-14 83.6 108 46.3
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.9e-10 70.5 132 37.1
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 5.7e-09 66.6 62 51.6
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 1.3e-08 65.5 100 33.0
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 4.8e-08 63.5 77 48.1
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 9.0e-07 59.3 77 41.6


User provided reference genes

Program Settings