Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 6.4e-135 484.2 262 100.0
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 1.5e-123 446.4 262 90.8
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.3e-123 445.3 262 89.7
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 5.6e-123 444.5 262 90.5
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.6e-123 443.7 262 89.7
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.6e-123 443.7 262 89.7
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 9.6e-123 443.7 262 89.7
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 90.1
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 2.8e-122 442.2 262 90.1
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 3.6e-122 441.8 262 88.5
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.6e-122 441.8 262 90.1
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 3.6e-122 441.8 262 89.3
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 4.8e-122 441.4 262 89.3
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 4.8e-122 441.4 262 88.9
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.8e-122 441.4 262 89.3
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.8e-122 441.4 262 89.3
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 6.2e-122 441.0 262 88.9
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 89.7
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 88.5
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 88.5
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.4e-121 439.9 262 88.9
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 89.7
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.8e-121 439.5 261 88.9
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 88.5
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 3.1e-121 438.7 262 89.3
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 4.0e-121 438.3 262 88.5
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 4.0e-121 438.3 262 88.5
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 89.3
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 89.3
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 88.9
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 87.0
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 87.0
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 87.4
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.3e-119 433.3 262 86.6
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.3e-119 433.3 262 88.5
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.2e-119 432.6 259 90.3
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 2.2e-119 432.6 262 88.2
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 87.8
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 87.0
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 88.2
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 88.2
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 86.6
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 87.0
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 87.4
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 86.6
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 86.3
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 88.2
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 88.2
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 85.9
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.2e-117 426.8 263 86.7
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 85.1
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 87.0
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 85.9
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 86.6
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 86.3
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 86.3
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 6.0e-117 424.5 263 86.3
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 85.9
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 85.1
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 1.3e-116 423.3 263 85.9
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 86.6
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 85.1
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 85.5
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 85.5
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 84.7
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 84.7
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 85.1
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 85.1
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 85.1
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 84.4
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 7.4e-115 417.5 263 85.2
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 84.0
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 84.0
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 82.4
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 83.6
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 84.4
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 84.7
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 3.7e-114 415.2 264 84.5
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 8.1e-114 414.1 262 83.6
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 83.2
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 1.8e-113 412.9 262 82.8
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.8e-113 412.9 262 83.2
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 4.0e-113 411.8 262 83.2
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 5.3e-113 411.4 247 89.5
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.5e-112 409.8 250 85.2
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.0e-112 409.5 264 83.0
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 2.6e-112 409.1 255 85.1
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 3.4e-112 408.7 262 81.7
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 4.5e-112 408.3 247 88.3
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 9.9e-112 407.1 262 81.7
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 9.9e-112 407.1 263 82.5
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 9.9e-112 407.1 262 83.2
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.7e-111 406.4 264 83.3
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.1e-110 403.7 262 81.7
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.9e-110 402.9 262 81.3
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 4.2e-110 401.7 262 81.7
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 7.1e-110 401.0 263 81.7
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 1.0e-108 397.1 263 82.9
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.8e-108 396.4 263 82.5
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.3e-108 396.0 246 86.2
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 80.5
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 80.5
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 80.9
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 80.5
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 80.5
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 80.5
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 6.7e-108 394.4 263 81.7
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.8
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 80.5
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 80.2
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 80.2
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 80.2
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 80.2
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 80.2
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 80.2
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 79.4
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 4.3e-107 391.7 262 79.8
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 4.3e-107 391.7 262 79.8
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 79.8
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.3e-106 390.2 263 79.8
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.3e-106 390.2 263 79.8
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.3e-106 390.2 263 79.8
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 79.8
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 79.8
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 8.2e-106 387.5 263 81.7
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.1e-105 387.1 263 82.1
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 2.4e-105 386.0 270 75.6
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 2.2e-103 379.4 270 74.8
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 5.5e-102 374.8 248 81.0
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.7e-101 372.5 263 78.3
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 2.3e-100 369.4 264 78.4
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 6.7e-100 367.9 262 77.1
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 7.4e-99 364.4 218 89.0
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 2.8e-98 362.5 262 76.7
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.8e-97 359.8 249 74.7
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.7e-95 353.2 241 80.5
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 2.5e-94 349.4 210 87.1
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.2e-93 347.1 234 76.9
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.4e-92 343.6 238 73.9
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 2.3e-92 342.8 226 77.4
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.5e-91 340.1 214 84.6
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 5.7e-91 338.2 223 77.1
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 9.7e-91 337.4 262 73.3
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.4e-89 332.8 263 67.3
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 1.0e-87 327.4 219 77.2
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.1e-81 305.4 250 70.8
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 9.1e-81 304.3 228 70.2
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 4.5e-80 302.0 267 61.4
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 8.5e-79 297.7 247 68.4
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.5e-78 295.0 228 64.9
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 6.1e-77 291.6 204 77.9
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 5.7e-75 285.0 250 66.0
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 8.2e-74 281.2 263 63.1
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 7.0e-73 278.1 208 69.7
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 3.6e-69 265.8 270 56.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 8.0e-69 264.6 262 62.2
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 6.3e-66 255.0 211 64.5
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 8.5e-63 244.6 235 64.7
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 4.5e-56 222.2 130 83.8
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 3.8e-55 219.2 244 51.2
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 3.0e-52 209.5 120 89.2
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 2.2e-50 203.4 138 80.4
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 2.2e-50 203.4 246 48.8
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 9.5e-46 188.0 118 86.4
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 4.7e-45 185.7 179 59.2
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 8.0e-37 158.3 141 63.1
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 4.4e-35 152.5 191 49.7
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.1e-28 131.3 96 71.9
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 3.7e-26 122.9 69 92.8


User provided reference genes

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