Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.2e-172 609.8 306 100.0
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 5.9e-132 474.6 305 78.7
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 2.8e-126 455.7 317 74.4
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 8.3e-126 454.1 282 79.1
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 5.4e-125 451.4 287 79.4
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.0e-123 447.2 259 84.2
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 5.0e-123 444.9 280 79.6
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 1.1e-122 443.7 301 73.4
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 7.3e-122 441.0 283 76.7
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 3.6e-121 438.7 282 77.0
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 8.0e-121 437.6 302 73.8
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 2.3e-120 436.0 281 77.2
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.3e-120 436.0 280 76.8
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.3e-120 436.0 281 76.2
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.3e-120 436.0 281 76.2
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 4.0e-120 435.3 244 85.2
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 6.8e-120 434.5 242 86.4
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 6.8e-120 434.5 242 86.4
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.6e-119 432.6 290 74.8
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 3.4e-119 432.2 248 83.9
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 4.4e-119 431.8 282 76.2
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 7.5e-119 431.0 247 84.2
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 7.5e-119 431.0 242 85.5
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 7.5e-119 431.0 293 74.7
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 9.8e-119 430.6 285 73.7
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 1.3e-118 430.3 245 83.3
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.7e-118 429.9 302 71.5
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.7e-118 429.9 316 70.3
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 4.9e-118 428.3 308 70.5
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 4.9e-118 428.3 242 86.0
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 6.4e-118 427.9 240 85.0
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 6.4e-118 427.9 268 78.4
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.4e-117 426.8 260 79.6
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 3.2e-117 425.6 285 75.4
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 3.2e-117 425.6 305 69.8
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 4.1e-117 425.2 282 73.4
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 5.4e-117 424.9 303 70.6
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 5.4e-117 424.9 293 74.1
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.0e-117 424.5 289 74.0
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 9.2e-117 424.1 242 84.3
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 9.2e-117 424.1 285 74.4
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.2e-116 423.7 283 76.0
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.2e-116 423.7 270 77.0
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 1.6e-116 423.3 301 70.1
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 2.7e-116 422.5 303 70.0
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 2.7e-116 422.5 286 72.7
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 2.7e-116 422.5 246 82.9
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 3.5e-116 422.2 299 70.6
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 6.0e-116 421.4 300 71.3
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 6.0e-116 421.4 249 80.7
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.0e-115 420.6 244 82.8
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.7e-115 419.9 282 75.5
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.3e-115 419.5 244 81.1
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 2.3e-115 419.5 242 83.9
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 3.0e-115 419.1 278 75.5
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 3.0e-115 419.1 242 83.1
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 6.6e-115 417.9 278 74.1
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 6.6e-115 417.9 243 80.2
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 6.6e-115 417.9 261 78.5
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 1.1e-114 417.2 251 79.7
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.1e-114 417.2 242 83.1
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.5e-114 416.8 245 81.6
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 3.3e-114 415.6 300 71.7
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 3.3e-114 415.6 326 66.6
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 4.3e-114 415.2 281 71.9
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 9.5e-114 414.1 285 71.6
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.1e-113 412.9 313 67.7
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.8e-113 412.5 309 65.4
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 3.6e-113 412.1 284 72.9
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.6e-113 412.1 282 70.9
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.6e-113 412.1 313 68.7
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.1e-112 410.6 274 73.4
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.4e-112 410.2 279 73.1
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 5.2e-112 408.3 241 80.5
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 5.2e-112 408.3 278 71.6
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 6.8e-112 407.9 285 72.3
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.5e-111 406.8 260 73.8
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 7.5e-111 404.4 310 64.2
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 7.5e-111 404.4 244 77.0
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 8.3e-110 401.0 287 70.7
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 8.3e-110 401.0 390 56.9
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.1e-109 400.6 242 79.3
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.1e-109 400.6 245 77.1
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.1e-109 400.6 244 76.6
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.4e-109 400.2 241 76.8
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 7.0e-109 397.9 246 77.6
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 9.2e-109 397.5 246 76.4
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.6e-108 395.2 336 64.3
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.3e-107 393.7 325 64.6
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 2.5e-106 389.4 290 69.0
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 1.2e-105 387.1 280 71.1
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.1e-104 384.0 269 69.9
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 4.0e-104 382.1 281 66.9
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 8.9e-104 380.9 282 67.0
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.2e-103 380.6 260 73.1
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 2.7e-100 369.4 256 72.7
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 7.8e-100 367.9 305 63.6
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.0e-99 367.5 374 55.9
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 8.1e-97 357.8 212 80.7
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 6.8e-96 354.8 241 72.2
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.5e-95 353.6 269 67.7
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 4.4e-95 352.1 243 74.1
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 3.8e-94 349.0 332 56.0
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.4e-93 346.3 245 70.6
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 7.1e-93 344.7 216 77.3
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 9.2e-93 344.4 280 60.7
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.1e-92 343.2 212 73.6
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.4e-88 330.5 261 60.5
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 6.9e-88 328.2 263 65.8
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.6e-82 307.8 231 66.7
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 2.4e-80 303.1 233 67.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 8.4e-78 294.7 167 86.2
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.3e-75 287.3 290 49.3
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 4.8e-73 278.9 212 60.8
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.7e-70 270.4 176 75.0
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 1.2e-68 264.2 164 76.2
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 6.0e-68 261.9 224 61.2
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 6.0e-68 261.9 159 81.1
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.3e-67 260.0 246 49.6
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 5.7e-66 255.4 144 86.1
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.6e-65 253.8 251 52.6
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 6.1e-60 235.3 267 53.6
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.8e-59 233.8 137 81.8
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 2.3e-59 233.4 206 62.6
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 3.0e-59 233.0 191 64.9
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 5.3e-56 222.2 231 44.6
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.6e-55 219.9 137 75.9
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.6e-52 209.5 130 80.8
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.4e-51 207.6 130 76.2
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.0e-50 203.8 170 62.9
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 4.3e-50 202.6 238 43.7
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.3e-49 201.1 167 58.7
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.4e-48 196.8 111 83.8
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 4.5e-47 192.6 100 89.0
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.7e-46 190.7 110 83.6
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 3.8e-46 189.5 135 69.6
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 3.8e-46 189.5 135 69.6
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.5e-45 186.8 111 75.7
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.6e-44 183.0 99 81.8
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 6.1e-44 182.2 232 41.4
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.3e-41 174.5 163 57.7
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 5.0e-38 162.5 92 82.6
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 8.8e-35 151.8 219 39.7
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 2.0e-34 150.6 135 55.6
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 4.4e-34 149.4 77 89.6
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 9.7e-34 148.3 239 37.2
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 4.8e-33 146.0 82 76.8
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 2.4e-32 143.7 76 86.8
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 4.1e-32 142.9 105 66.7
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 4.2e-29 132.9 112 57.1
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 3.6e-28 129.8 69 84.1
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.2e-23 114.8 65 81.5
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.7e-23 113.6 102 59.8
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.5e-23 113.2 56 87.5
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.0e-22 111.7 244 31.1
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 3.8e-22 109.8 88 59.1
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 4.7e-20 102.8 102 52.0
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 4.0e-19 99.8 88 60.2
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 9.8e-18 95.1 65 66.2
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.7e-15 85.5 114 42.1
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.5e-13 81.3 59 55.9
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.9e-13 80.9 48 72.9
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 4.4e-10 69.7 102 38.2
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 4.1e-08 63.2 44 65.9
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 2.9e-06 57.0 76 40.8


User provided reference genes

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