Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3419 Acer truncatum HOM05D005764 ORTHO05D006600 1.3e-119 433.3 263 100.0
Atru.chr6.3407 Acer truncatum HOM05D005764 ORTHO05D006600 1.1e-110 403.7 205 97.6
Atru.chr6.3404 Acer truncatum HOM05D005764 ORTHO05D006600 5.9e-96 354.8 257 72.8
Atru.chr1.4150 Acer truncatum HOM05D005764 ORTHO05D006600 1.3e-71 273.9 141 95.7
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 9.2e-41 171.4 255 42.0
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 1.1e-38 164.5 256 43.8
Thecc.01G197100 Theobroma cacao HOM05D005764 ORTHO05D006600 3.6e-37 159.5 259 38.6
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 4.7e-37 159.1 255 42.4
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 1.4e-36 157.5 252 40.5
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 5.2e-36 155.6 256 39.8
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 5.2e-36 155.6 259 40.5
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 1.4e-33 147.5 255 38.8
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 1.0e-31 141.4 254 36.6
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 5.1e-31 139.0 230 37.8
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 6.6e-31 138.7 258 35.7
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 6.6e-31 138.7 249 34.5
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 5.6e-30 135.6 231 36.8
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 5.6e-30 135.6 252 34.1
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 7.3e-30 135.2 261 34.5
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 7.3e-30 135.2 216 40.3
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 7.3e-30 135.2 216 40.3
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 3.6e-29 132.9 214 38.3
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 4.7e-29 132.5 220 36.4
TAR633G1425 Trochodendron aralioides HOM05D005764 ORTHO05D006600 6.2e-29 132.1 237 35.9
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 1.1e-28 131.3 216 36.6
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 1.8e-28 130.6 243 34.2
vmacro12075 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.4e-28 130.2 237 36.3
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 4.0e-28 129.4 224 36.6
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 5.2e-28 129.0 215 38.1
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 5.2e-28 129.0 222 37.8
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 9.0e-28 128.3 229 37.1
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 9.0e-28 128.3 241 34.4
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 2.0e-27 127.1 226 35.0
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 2.0e-27 127.1 229 36.7
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 3.4e-27 126.3 217 36.4
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 4.4e-27 125.9 227 36.1
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 9.9e-27 124.8 258 33.7
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 2.2e-26 123.6 220 35.0
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 3.8e-26 122.9 233 34.8
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 4.9e-26 122.5 225 35.6
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 4.9e-26 122.5 225 34.7
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 4.9e-26 122.5 219 36.1
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 8.4e-26 121.7 245 32.7
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.4e-25 120.2 247 32.4
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 2.4e-25 120.2 218 33.9
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 3.2e-25 119.8 255 32.2
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 5.4e-25 119.0 245 32.7
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 7.1e-25 118.6 221 33.5
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 9.3e-25 118.2 200 36.5
Aqoxy7G02956 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 1.2e-24 117.9 249 32.5
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 2.7e-24 116.7 246 32.5
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 3.5e-24 116.3 231 33.8
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 3.5e-24 116.3 215 34.0
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 4.6e-24 115.9 248 31.0
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 1.0e-23 114.8 202 35.6
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 1.7e-23 114.0 213 34.7
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 1.7e-23 114.0 233 33.5
CAN.G177.15 Capsicum annuum HOM05D005764 ORTHO05D006600 8.7e-23 111.7 252 31.3
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 1.1e-22 111.3 221 34.4
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.5e-22 110.9 242 31.8
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 3.6e-21 106.3 208 31.2
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 1.1e-20 104.8 196 33.7
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 1.8e-20 104.0 197 36.5
Atru.chr6.1906 Acer truncatum HOM05D005764 ORTHO05D006600 2.4e-20 103.6 248 30.2
vmacro19172 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.4e-20 103.6 203 34.0
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 9.0e-20 101.7 238 32.4
Gohir.D03G110000 Gossypium hirsutum HOM05D005764 ORTHO05D006600 1.5e-19 100.9 238 31.5
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 3.4e-19 99.8 231 29.9
Sopen07g023950 Solanum pennellii HOM05D005764 ORTHO05D006600 7.6e-19 98.6 216 31.5
PGSC0003DMG400017401 Solanum tuberosum HOM05D005764 ORTHO05D006600 7.6e-19 98.6 215 31.2
EL10Ac5g11299 Beta vulgaris HOM05D005764 ORTHO05D006600 9.9e-19 98.2 198 35.9
ATR0317G130 Amborella trichopoda HOM05D005764 ORTHO05D006600 1.7e-18 97.4 224 30.4
AUR62034761 Chenopodium quinoa HOM05D005764 ORTHO05D006600 1.7e-18 97.4 226 31.9
AUR62041690 Chenopodium quinoa HOM05D005764 ORTHO05D006600 1.7e-18 97.4 226 31.9
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 1.7e-18 97.4 220 31.8
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 2.9e-18 96.7 228 31.6
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 6.4e-18 95.5 226 31.9
Atru.chr6.215 Acer truncatum HOM05D001465 ORTHO05D006600 1.1e-17 94.7 45 95.6
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 5.4e-17 92.4 211 30.8
THA.LOC104804672 Tarenaya hassleriana HOM05D005764 ORTHO05D006600 9.3e-17 91.7 214 30.8
QL04p006829 Quercus lobata HOM05D000056 ORTHO05D000019 1.2e-16 91.3 176 34.1
Lsat_1_v5_gn_4_84661 Lactuca sativa HOM05D005764 ORTHO05D006600 6.0e-16 89.0 211 32.2
AT5G61990 Arabidopsis thaliana HOM05D005764 ORTHO05D006600 6.7e-15 85.5 246 27.6
vmacro19171 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 6.7e-15 85.5 131 39.7
C03p65110 Brassica napus HOM05D005764 ORTHO05D006600 4.3e-14 82.8 210 30.0
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 4.3e-14 82.8 219 31.1
BolC3t18765H Brassica oleracea HOM05D005764 ORTHO05D006600 5.6e-14 82.4 210 30.0
BcaB02g09611 Brassica carinata HOM05D005764 ORTHO05D006600 7.4e-14 82.0 213 31.0
Carub.0008s2268 Capsella rubella HOM05D005764 ORTHO05D006600 7.4e-14 82.0 219 29.2
Sp2g25170 Schrenkiella parvula HOM05D005764 ORTHO05D006600 1.6e-13 80.9 219 29.7
RcHm_v2.0_Chr2g0162681 Rosa chinensis HOM05D005764 ORTHO05D006600 2.1e-13 80.5 109 40.4
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 2.8e-13 80.1 228 28.5
AL8G38750 Arabidopsis lyrata HOM05D005764 ORTHO05D006600 3.7e-13 79.7 230 27.8
Gohir.A03G056500 Gossypium hirsutum HOM05D005764 ORTHO05D006600 4.8e-13 79.3 214 29.4
A06p28690 Brassica napus HOM05D005764 ORTHO05D006600 6.2e-13 79.0 201 29.4
BraA06t25809Z Brassica rapa HOM05D005764 ORTHO05D006600 6.2e-13 79.0 201 29.4
CDE02G2785 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 6.2e-13 79.0 192 27.1
Duzib205G1181 Durio zibethinus HOM05D005764 ORTHO05D006600 1.1e-12 78.2 218 28.9
HanXRQChr09g0273911 Helianthus annuus HOM05D005764 ORTHO05D006600 4.0e-12 76.3 212 32.1
Ciclev10014235m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.2e-11 74.7 66 57.6
CiPaw.11G052700 Carya illinoinensis HOM05D005764 ORTHO05D006600 1.5e-11 74.3 80 50.0
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 4.5e-11 72.8 59 59.3
HanXRQChr16g0498891 Helianthus annuus HOM05D005764 ORTHO05D006600 4.5e-11 72.8 211 26.5
MELO3C011746.2 Cucumis melo HOM05D005764 ORTHO05D006600 8.4e-10 68.6 116 35.3
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 1.1e-09 68.2 204 27.0
CDE05G0348 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 1.4e-09 67.8 121 35.5
Solyc07g045400.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 1.9e-09 67.4 90 42.2
HanXRQChr03g0075031 Helianthus annuus HOM05D005764 ORTHO05D006600 5.5e-09 65.9 215 27.9
CDE05G2510 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 2.7e-08 63.5 88 37.5
RcHm_v2.0_Chr1g0325241 Rosa chinensis HOM05D005764 ORTHO05D006600 4.6e-08 62.8 79 44.3
Nitab4.5_0006992g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 7.9e-08 62.0 72 41.7
ECA232G4944 Erigeron canadensis HOM05D000422 ORTHO05D006600 1.8e-07 60.8 64 46.9
Thecc.03G139200 Theobroma cacao HOM05D005764 ORTHO05D006600 3.0e-07 60.1 58 44.8
Lsat_1_v5_gn_9_103540 Lactuca sativa HOM05D005764 ORTHO05D006600 3.9e-07 59.7 248 23.0
HPP92_025492 Vanilla planifolia HOM05D005764 ORTHO05D006600 1.1e-06 58.2 101 32.7
ECA232G3323 Erigeron canadensis HOM05D005764 ORTHO05D006600 2.5e-06 57.0 54 48.1
Aqoxy7G03003 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 5.6e-06 55.8 62 40.3
Nitab4.5_0005425g0010 Nicotiana tabacum HOM05D005764 ORTHO05D006600 5.6e-06 55.8 59 42.4


User provided reference genes

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