Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.339 Acer truncatum HOM05D006686 ORTHO05D008463 5.5e-239 830.5 398 100.0
QL02p103152 Quercus lobata HOM05D006686 ORTHO05D008463 1.5e-188 662.9 395 79.0
Manes.07G028500 Manihot esculenta HOM05D006686 ORTHO05D008463 3.8e-187 658.3 394 78.9
Cfa004450 Carpinus fangiana HOM05D006686 ORTHO05D008463 2.1e-185 652.5 394 78.4
Thecc.06G000500 Theobroma cacao HOM05D006686 ORTHO05D008463 8.7e-184 647.1 393 77.4
Gorai.011G003800 Gossypium raimondii HOM05D006686 ORTHO05D008463 3.3e-183 645.2 394 77.4
Gohir.D10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 5.6e-183 644.4 394 77.4
COL.COLO4_26876 Corchorus olitorius HOM05D006686 ORTHO05D008463 7.3e-183 644.0 401 76.6
Gohir.A10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 9.6e-183 643.7 394 77.2
Duzib235G0699 Durio zibethinus HOM05D006686 ORTHO05D008463 2.1e-182 642.5 393 76.1
GSVIVG01023154001 Vitis vinifera HOM05D006686 ORTHO05D008463 2.6e-180 635.6 397 76.8
Potri.004G228500 Populus trichocarpa HOM05D006686 ORTHO05D008463 9.9e-180 633.6 398 76.6
Sabra01G0173400 Salix brachista HOM05D006686 ORTHO05D008463 9.9e-180 633.6 396 76.8
Dinv29673 Davidia involucrata HOM05D006686 ORTHO05D008463 3.5e-177 625.2 405 74.1
Prupe.1G584700 Prunus persica HOM05D006686 ORTHO05D008463 6.7e-176 620.9 417 74.8
CANSAT01G1449 Cannabis sativa HOM05D006686 ORTHO05D008463 1.1e-175 620.2 395 74.7
ClCG10G007390 Citrullus lanatus HOM05D006686 ORTHO05D008463 5.6e-175 617.8 394 74.1
MD08G1247400 Malus domestica HOM05D006686 ORTHO05D008463 7.4e-175 617.5 395 75.2
CsaV3_3G006630 Cucumis sativus L. HOM05D006686 ORTHO05D008463 3.7e-174 615.1 394 74.1
MELO3C016473.2 Cucumis melo HOM05D006686 ORTHO05D008463 8.1e-174 614.0 394 73.6
Nn5g27352 Nelumbo nucifera HOM05D006686 ORTHO05D008463 5.8e-172 607.8 385 74.8
TAR381G1724 Trochodendron aralioides HOM05D006686 ORTHO05D008463 1.7e-171 606.3 383 74.9
FAN04G2541 Fragaria x ananassa HOM05D006686 ORTHO05D008463 2.2e-171 605.9 398 74.4
FvH4_5g27990 Fragaria vesca HOM05D006686 ORTHO05D008463 8.4e-171 604.0 398 74.6
PGR042G1861 Punica granatum HOM05D006686 ORTHO05D008463 8.4e-171 604.0 374 76.2
FAN18G1657 Fragaria x ananassa HOM05D006686 ORTHO05D008463 1.9e-170 602.8 398 74.4
MBI03_g20875_MAGBIO Magnolia biondii HOM05D006686 ORTHO05D008463 6.0e-169 597.8 385 74.3
TWI59G1206 Tripterygium wilfordii HOM05D006686 ORTHO05D008463 1.3e-168 596.7 394 72.1
CSS0008654 Camellia sinensis var. sinensis HOM05D006686 ORTHO05D008463 2.3e-168 595.9 401 70.6
Cc02_g23500 Coffea canephora HOM05D006686 ORTHO05D008463 1.8e-165 586.3 382 71.5
THA.LOC104809035 Tarenaya hassleriana HOM05D006686 ORTHO05D008463 3.1e-165 585.5 394 71.1
Eucgr.G00081 Eucalyptus grandis HOM05D006686 ORTHO05D008463 5.3e-165 584.7 407 70.8
MSTRG.16472 Avicennia marina HOM05D006686 ORTHO05D008463 4.5e-164 581.6 392 70.2
Migut.B00728 Erythranthe guttata HOM05D006686 ORTHO05D008463 7.6e-164 580.9 383 72.3
HanXRQChr01g0013991 Helianthus annuus HOM05D006686 ORTHO05D008463 8.4e-163 577.4 394 69.3
DCAR_022282 Daucus carota HOM05D006686 ORTHO05D008463 2.5e-162 575.9 385 71.7
vmacro19835 Vaccinium macrocarpon HOM05D006686 ORTHO05D008463 2.5e-162 575.9 375 72.0
Carub.0004s0259 Capsella rubella HOM05D006686 ORTHO05D008463 3.2e-162 575.5 394 69.5
Solyc01g103110.3 Solanum lycopersicum HOM05D006686 ORTHO05D008463 5.5e-162 574.7 392 70.2
Ah.03g136810 Amaranthus hybridus HOM05D006686 ORTHO05D008463 9.3e-162 573.9 398 69.3
AT2G23390 Arabidopsis thaliana HOM05D006686 ORTHO05D008463 6.1e-161 571.2 394 68.8
PGSC0003DMG402024871 Solanum tuberosum HOM05D006686 ORTHO05D008463 6.1e-161 571.2 392 69.9
ECA236G4971 Erigeron canadensis HOM05D006686 ORTHO05D008463 1.0e-160 570.5 396 69.4
EL10Ac6g14006 Beta vulgaris HOM05D006686 ORTHO05D008463 2.3e-160 569.3 437 63.2
ATR1089G117 Amborella trichopoda HOM05D006686 ORTHO05D008463 3.0e-160 568.9 355 74.4
Sopen01g045530 Solanum pennellii HOM05D006686 ORTHO05D008463 3.9e-160 568.5 392 69.4
Lsat_1_v5_gn_7_75180 Lactuca sativa HOM05D006686 ORTHO05D008463 2.5e-159 565.8 394 69.3
SGA_v2.0_scaffold254G45251 Striga asiatica HOM05D006686 ORTHO05D008463 1.3e-158 563.5 365 71.2
AL4G13300 Arabidopsis lyrata HOM05D006686 ORTHO05D008463 1.6e-158 563.1 397 68.8
Aa31LG3G6890 Aethionema arabicum HOM05D006686 ORTHO05D008463 1.1e-157 560.5 355 73.2
PSO210G5299 Papaver somniferum HOM05D006686 ORTHO05D008463 2.0e-156 556.2 372 71.8
Sp4g17050 Schrenkiella parvula HOM05D006686 ORTHO05D008463 2.6e-156 555.8 395 68.4
Nitab4.5_0001057g0120 Nicotiana tabacum HOM05D006686 ORTHO05D008463 3.4e-156 555.4 386 69.7
CAN.G855.45 Capsicum annuum HOM05D006686 ORTHO05D008463 7.7e-156 554.3 382 69.6
Nitab4.5_0001129g0010 Nicotiana tabacum HOM05D006686 ORTHO05D008463 1.7e-155 553.1 394 68.8
Sp6g11350 Schrenkiella parvula HOM05D006686 ORTHO05D008463 5.0e-155 551.6 395 67.6
Peaxi162Scf00011g01843 Petunia axillaris HOM05D006686 ORTHO05D008463 3.2e-154 548.9 379 70.2
Ciclev10001220m.g Citrus clementina HOM05D006686 ORTHO05D008463 9.4e-154 547.4 401 68.3
Lj4g0021342 Lotus japonicus HOM05D006686 ORTHO05D008463 4.6e-153 545.0 397 67.5
Lj9C281G9 Lonicera japonica HOM05D006686 ORTHO05D008463 7.9e-153 544.3 339 75.8
CDE04G2622 Ceratophyllum demersum HOM05D006686 ORTHO05D008463 1.0e-152 543.9 388 66.8
arahy.Tifrunner.gnm1.ann1.A5H9W7 Arachis hypogaea HOM05D006686 ORTHO05D008463 1.1e-151 540.4 397 65.0
Thhalv10013635m.g Eutrema salsugineum HOM05D006686 ORTHO05D008463 2.5e-151 539.3 352 71.3
arahy.Tifrunner.gnm1.ann1.KKPS0T Arachis hypogaea HOM05D006686 ORTHO05D003399 3.3e-151 538.9 397 65.2
HPP92_005637 Vanilla planifolia HOM05D006686 ORTHO05D008463 7.4e-151 537.7 356 70.5
C03p33220 Brassica napus HOM05D006686 ORTHO05D008463 3.7e-150 535.4 399 65.2
BraA03t11965Z Brassica rapa HOM05D006686 ORTHO05D008463 3.7e-150 535.4 399 64.9
BcaC01g04848 Brassica carinata HOM05D006686 ORTHO05D008463 1.1e-149 533.9 399 64.9
BolC3t15644H Brassica oleracea HOM05D006686 ORTHO05D008463 1.1e-149 533.9 399 64.9
unitig_22.g6102 Utricularia gibba HOM05D006686 ORTHO05D008463 1.4e-149 533.5 367 69.8
BcaB01g02944 Brassica carinata HOM05D006686 ORTHO05D008463 4.1e-149 531.9 395 65.1
Lalb_Chr07g0176791 Lupinus albus HOM05D006686 ORTHO05D008463 4.1e-149 531.9 382 67.5
RcHm_v2.0_Chr7g0220181 Rosa chinensis HOM05D006686 ORTHO05D008463 2.0e-148 529.6 291 84.2
HPP92_005643 Vanilla planifolia HOM05D006686 ORTHO05D008463 5.9e-148 528.1 356 70.5
Sed0016336 Sechium edule HOM05D006686 ORTHO05D008463 2.5e-146 522.7 291 80.8
Phvul.003G075600 Phaseolus vulgaris HOM05D006686 ORTHO05D008463 4.7e-145 518.5 366 68.3
VMungo1215G3175 Vigna mungo HOM05D006686 ORTHO05D008463 4.7e-145 518.5 312 75.6
Glyma.07G273000 Glycine max HOM05D006686 ORTHO05D008463 1.8e-144 516.5 363 68.0
A03p27520 Brassica napus HOM05D006686 ORTHO05D008463 3.9e-144 515.4 430 60.0
Ca_13532_v3 Cicer arietinum L. HOM05D006686 ORTHO05D008463 2.0e-143 513.1 396 64.4
Os04g0442200 Oryza sativa ssp. japonica HOM05D006686 ORTHO05D008463 3.1e-141 505.8 392 62.0
SEGI_40259 Sequoiadendron giganteum HOM05D006686 ORTHO05D008463 3.1e-141 505.8 376 64.4
Psat4g001080 Pisum sativum HOM05D006686 ORTHO05D008463 2.5e-138 496.1 316 71.2
Cpa.g.sc113.25 Carica papaya HOM05D006686 ORTHO05D008463 7.2e-138 494.6 390 63.6
TPR.G5968 Trifolium pratense HOM05D006686 ORTHO05D008463 1.8e-136 490.0 310 73.9
Medtr4g134670 Medicago truncatula HOM05D006686 ORTHO05D008463 6.7e-136 488.0 317 72.6
Zm00001eb423040 Zea mays HOM05D006686 ORTHO05D008463 4.4e-135 485.3 356 65.2
Mapoly0007s0219 Marchantia polymorpha HOM05D006686 ORTHO05D008463 1.1e-133 480.7 363 63.9
Rhsim05G0116000 Rhododendron simsii HOM05D006686 ORTHO05D008463 2.4e-133 479.6 395 62.0
Pp3c21_14930 Physcomitrium patens HOM05D006686 ORTHO05D008463 1.0e-128 464.2 358 61.5
AagrBONN_evm.TU.Sc2ySwM_362.840 Anthoceros agrestis HOM05D006686 ORTHO05D008463 3.0e-128 462.6 363 59.8
Aqoxy5G01865 Aquilegia oxysepala HOM05D006686 ORTHO05D008463 2.2e-123 446.4 357 61.9
CiPaw.06G176300 Carya illinoinensis HOM05D006686 ORTHO05D008463 8.8e-120 434.5 257 78.6
SMO364G0094 Selaginella moellendorffii HOM05D006686 ORTHO05D008463 1.8e-117 426.8 312 63.5
Actinidia01629 Actinidia chinensis HOM05D006686 ORTHO05D008463 1.6e-113 413.7 311 65.3
Sc03g0004960 Simmondsia chinensis HOM05D006686 ORTHO05D008463 8.6e-107 391.3 377 53.6
PSO447G0166 Papaver somniferum HOM05D006686 ORTHO05D008463 1.3e-102 377.5 372 54.3
FAN08G3117 Fragaria x ananassa HOM05D006686 ORTHO05D008463 9.8e-95 351.3 270 65.2
RcHm_v2.0_Chr7g0220471 Rosa chinensis HOM05D006686 ORTHO05D008463 3.2e-93 346.3 227 74.9
Glyma.17G001600 Glycine max HOM05D006686 ORTHO05D008463 9.9e-87 324.7 226 70.4
AUR62032459 Chenopodium quinoa HOM05D006686 ORTHO05D008463 1.3e-75 287.7 273 54.9
Haze_27211 Corylus avellana HOM05D006686 ORTHO05D008463 1.1e-74 284.6 308 45.5
Cre09.g399626 Chlamydomonas reinhardtii HOM05D006686 ORTHO05D008463 1.3e-73 281.2 381 41.7
PRCOL_00000210 Prasinoderma coloniale HOM05D006686 ORTHO05D008463 1.6e-73 280.8 342 43.9
Haze_09995 Corylus avellana HOM05D006686 ORTHO05D008463 6.4e-70 268.9 139 87.8
CARHR293020 Cardamine hirsuta HOM05D006686 ORTHO05D008463 3.2e-69 266.5 159 76.1
Eucgr.A00755 Eucalyptus grandis HOM05D006686 ORTHO05D008463 2.4e-64 250.4 155 76.1
Haze_09994 Corylus avellana HOM05D006686 ORTHO05D008463 5.8e-63 245.7 256 53.9
Oeu000154.1 Olea europaea HOM05D006686 ORTHO05D008463 1.6e-60 237.7 131 84.0
Nitab4.5_0004668g0030 Nicotiana tabacum HOM05D006686 ORTHO05D008463 6.3e-41 172.6 128 64.1
CiPaw.06G176500 Carya illinoinensis HOM05D006686 ORTHO05D008463 6.1e-36 156.0 133 62.4
CBR_g48698 Chara braunii HOM05D006686 ORTHO05D008463 5.9e-31 139.4 125 55.2
Actinidia26190 Actinidia chinensis HOM05D006686 ORTHO05D008463 1.7e-22 111.3 57 84.2
Haze_05751 Corylus avellana HOM05D006686 ORTHO05D008463 2.3e-19 100.9 102 51.0
CBR_g48699 Chara braunii HOM05D006686 ORTHO05D008463 1.3e-17 95.1 79 54.4
RcHm_v2.0_Chr7g0220191 Rosa chinensis HOM05D006686 ORTHO05D008463 1.7e-17 94.7 121 52.1
Peaxi162Scf00011g01844 Petunia axillaris HOM05D006686 ORTHO05D008463 2.7e-07 60.8 42 66.7


User provided reference genes

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