Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 2.4e-59 231.9 112 100.0
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.1e-54 216.5 112 91.1
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 5.3e-54 214.2 112 89.3
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 6.9e-54 213.8 112 89.3
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 9.0e-54 213.4 112 88.4
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 2.6e-53 211.8 111 88.3
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 3.4e-53 211.5 112 87.5
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 3.4e-53 211.5 112 87.5
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 5.8e-53 210.7 112 87.5
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 5.8e-53 210.7 112 88.4
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 7.6e-53 210.3 112 88.4
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 1.0e-52 209.9 112 88.4
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 2.2e-52 208.8 112 85.7
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 2.2e-52 208.8 112 87.5
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 3.8e-52 208.0 112 86.6
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 4.9e-52 207.6 112 86.6
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 4.9e-52 207.6 112 86.6
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 4.9e-52 207.6 112 85.7
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 6.5e-52 207.2 112 85.7
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 6.5e-52 207.2 112 85.7
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 1.1e-51 206.5 112 87.5
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 1.4e-51 206.1 112 85.7
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 1.9e-51 205.7 112 85.7
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 2.5e-51 205.3 112 84.8
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 3.2e-51 204.9 112 84.8
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 4.2e-51 204.5 112 85.7
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 4.2e-51 204.5 112 85.7
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 5.5e-51 204.1 112 83.9
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 5.5e-51 204.1 112 83.9
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 7.1e-51 203.8 112 85.7
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 9.3e-51 203.4 112 86.6
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 9.3e-51 203.4 112 83.9
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 9.3e-51 203.4 112 83.9
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 1.2e-50 203.0 112 85.7
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 1.6e-50 202.6 112 82.1
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 1.6e-50 202.6 112 83.0
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 1.6e-50 202.6 112 84.8
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 2.1e-50 202.2 112 84.8
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 2.7e-50 201.8 112 84.8
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 2.7e-50 201.8 112 84.8
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 2.7e-50 201.8 112 84.8
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 3.5e-50 201.4 112 84.8
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 3.5e-50 201.4 112 83.9
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 4.6e-50 201.1 112 82.1
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 4.6e-50 201.1 112 83.9
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 1.0e-49 199.9 112 82.1
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 1.0e-49 199.9 112 82.1
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 1.3e-49 199.5 112 82.1
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 1.3e-49 199.5 112 82.1
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.3e-49 199.5 112 82.1
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 1.3e-49 199.5 112 83.0
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 1.8e-49 199.1 112 82.1
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 1.8e-49 199.1 112 81.2
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 2.3e-49 198.7 112 81.2
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 3.0e-49 198.4 112 82.1
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 3.0e-49 198.4 112 81.2
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 81.2
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 81.2
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 82.1
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 5.1e-49 197.6 112 81.2
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 5.1e-49 197.6 117 82.1
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 5.1e-49 197.6 112 83.0
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 5.1e-49 197.6 112 83.0
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 6.7e-49 197.2 112 81.2
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 6.7e-49 197.2 112 81.2
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 1.5e-48 196.1 110 84.5
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 2.5e-48 195.3 112 80.4
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 3.3e-48 194.9 112 79.5
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 7.4e-48 193.7 112 79.5
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 7.4e-48 193.7 112 79.5
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 7.4e-48 193.7 145 67.6
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 3.7e-47 191.4 111 80.2
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 1.1e-46 189.9 112 77.7
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.4e-46 189.5 127 73.2
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 4.1e-46 188.0 127 72.4
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 4.1e-46 188.0 127 72.4
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 5.3e-46 187.6 100 87.0
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 5.3e-46 187.6 112 75.9
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 9.0e-46 186.8 111 78.4
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 1.5e-45 186.0 141 66.0
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 4.5e-45 184.5 112 77.7
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 2.9e-44 181.8 139 65.5
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 5.0e-44 181.0 112 74.1
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 8.5e-44 180.3 98 85.7
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 1.4e-43 179.5 112 75.0
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 1.2e-42 176.4 112 72.3
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 1.2e-42 176.4 112 72.3
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 1.2e-42 176.4 112 72.3
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 2.7e-42 175.3 107 73.8
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 2.7e-42 175.3 107 73.8
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 4.6e-42 174.5 112 70.5
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 6.1e-42 174.1 110 75.5
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 5.7e-40 167.5 96 79.2
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 1.3e-39 166.4 106 72.6
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 2.2e-39 165.6 98 78.6
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 3.1e-38 161.8 155 52.9
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 4.1e-38 161.4 130 62.3
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 6.9e-38 160.6 99 74.7
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 4.2e-35 151.4 108 65.7
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 1.8e-33 146.0 79 83.5
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 5.1e-33 144.4 79 82.3
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 6.7e-33 144.1 98 68.4
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 2.6e-32 142.1 79 79.7
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.6e-32 142.1 111 55.9
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 2.6e-32 142.1 88 68.2
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 4.4e-32 141.4 109 65.1
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 1.7e-31 139.4 75 89.3
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 2.0e-29 132.5 75 85.3
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.2e-26 123.2 64 82.8
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 1.6e-26 122.9 108 50.0
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 2.7e-26 122.1 109 58.7
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.5e-24 116.3 64 78.1
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.6e-24 115.5 64 76.6
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 4.4e-24 114.8 64 76.6
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 4.4e-24 114.8 69 78.3
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 7.4e-24 114.0 82 65.9
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 2.2e-23 112.5 64 76.6
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.7e-23 111.7 64 75.0
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 4.1e-22 108.2 64 67.2
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 7.0e-22 107.5 63 73.0
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.6e-18 96.3 106 48.1
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.6e-18 96.3 106 48.1
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 2.1e-18 95.9 50 86.0
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 4.7e-18 94.7 152 42.8
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 7.7e-13 77.4 45 80.0
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 1.9e-11 72.8 40 82.5
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 1.8e-09 66.2 50 70.0
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 1.8e-09 66.2 50 70.0
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 3.4e-08 62.0 42 66.7


User provided reference genes

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