Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 4.0e-298 1027.3 516 100.0
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 9.4e-239 830.1 515 82.7
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 1.4e-221 773.1 513 76.8
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 1.2e-220 770.0 515 75.3
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 1.0e-216 756.9 514 74.7
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.1e-215 753.4 514 74.3
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 1.2e-214 750.0 516 74.6
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 8.0e-214 747.3 516 74.0
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 5.2e-213 744.6 516 74.8
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 2.6e-212 742.3 518 74.7
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 1.6e-209 733.0 516 74.4
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 5.9e-209 731.1 515 75.0
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 8.6e-208 727.2 516 74.4
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 7.2e-207 724.2 515 72.8
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 4.7e-206 721.5 516 74.2
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 2.8e-203 712.2 509 73.3
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 1.2e-201 706.8 522 70.5
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 7.8e-201 704.1 519 71.1
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 7.8e-201 704.1 516 72.7
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 7.8e-201 704.1 517 72.0
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 1.7e-200 703.0 518 72.2
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 6.6e-200 701.0 512 72.9
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 2.3e-197 692.6 512 71.9
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 7.5e-196 687.6 510 70.8
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 7.5e-196 687.6 517 70.2
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 5.4e-194 681.4 518 70.3
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 6.0e-193 677.9 511 69.9
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 7.8e-193 677.6 515 69.5
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 2.5e-191 672.5 518 68.7
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 4.3e-191 671.8 536 70.0
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 7.3e-191 671.0 512 70.5
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 1.6e-190 669.8 516 69.2
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 8.0e-190 667.5 512 70.3
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 1.4e-189 666.8 514 70.6
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 2.3e-189 666.0 518 67.8
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.5e-188 663.3 518 68.9
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 2.0e-188 662.9 517 69.6
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 2.0e-188 662.9 525 68.4
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 2.6e-188 662.5 520 69.4
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 3.4e-188 662.1 518 69.3
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 4.4e-188 661.8 525 68.4
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 4.4e-188 661.8 511 68.9
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 5.8e-188 661.4 518 69.3
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 7.5e-188 661.0 518 69.1
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 9.8e-188 660.6 514 68.7
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 9.8e-188 660.6 513 69.4
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 9.8e-188 660.6 519 69.2
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 1.3e-187 660.2 521 69.3
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 1.7e-187 659.8 510 69.2
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 2.9e-187 659.1 513 69.6
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 4.9e-187 658.3 499 69.9
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 6.4e-187 657.9 522 69.2
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 4.1e-186 655.2 518 68.1
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 5.4e-186 654.8 519 67.8
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 7.0e-186 654.4 514 68.5
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 1.2e-185 653.7 511 67.7
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 2.7e-185 652.5 514 69.1
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 4.6e-185 651.7 513 69.4
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 1.3e-184 650.2 509 68.4
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 2.3e-184 649.4 514 68.5
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 5.0e-184 648.3 519 68.4
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 1.1e-183 647.1 513 70.2
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 1.5e-183 646.7 515 68.0
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 1.9e-183 646.4 498 68.1
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 3.3e-183 645.6 511 68.5
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 9.5e-183 644.0 521 67.9
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 1.4e-181 640.2 515 66.4
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 2.0e-180 636.3 527 67.4
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 2.0e-180 636.3 515 66.0
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 5.8e-180 634.8 527 64.9
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 1.7e-179 633.3 529 65.0
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 2.2e-179 632.9 518 66.2
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.4e-178 630.2 512 67.0
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 2.1e-177 626.3 497 68.6
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 3.5e-177 625.5 498 68.1
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 5.1e-176 621.7 517 66.7
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 8.6e-176 620.9 496 68.8
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 8.6e-176 620.9 496 68.8
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 8.6e-176 620.9 524 66.2
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 8.6e-176 620.9 522 63.8
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.1e-175 620.5 526 64.6
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.5e-175 620.2 515 67.0
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 2.5e-175 619.4 496 67.7
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.3e-175 619.0 517 66.7
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 5.6e-175 618.2 521 64.5
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 9.5e-175 617.5 521 65.1
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 1.6e-174 616.7 499 68.1
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.6e-174 615.5 517 66.3
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 4.7e-174 615.1 497 68.0
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 8.1e-174 614.4 496 66.7
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 8.1e-174 614.4 515 65.8
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 5.8e-172 608.2 524 64.3
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 6.4e-171 604.7 510 63.5
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 2.4e-170 602.8 471 69.0
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 4.1e-170 602.1 510 63.3
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 6.0e-169 598.2 517 64.0
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.2e-166 590.5 512 64.6
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 2.1e-166 589.7 468 67.5
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 3.3e-159 565.8 511 61.4
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 3.1e-157 559.3 534 59.2
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 9.9e-156 554.3 463 64.8
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 8.4e-155 551.2 533 58.7
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 1.4e-154 550.4 524 59.4
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 5.6e-151 538.5 514 61.9
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 7.4e-143 511.5 524 56.3
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 1.1e-138 497.7 518 54.8
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 7.1e-138 495.0 520 54.4
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 7.1e-138 495.0 520 54.6
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 6.9e-133 478.4 482 57.9
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 1.1e-130 471.1 531 51.6
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 4.2e-130 469.2 508 56.1
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 5.9e-124 448.7 515 52.4
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 1.2e-121 441.0 529 51.6
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 2.2e-118 430.3 539 48.2
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.7e-115 420.6 306 69.6
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 4.8e-110 402.5 533 47.7
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 2.6e-103 380.2 294 70.1
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 7.7e-92 342.0 511 46.4
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 9.5e-90 335.1 577 40.4
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 9.9e-63 245.4 283 50.2
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 1.9e-53 214.5 340 41.5
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 1.5e-50 204.9 197 60.4
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 1.1e-42 178.7 290 41.0
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 3.3e-26 124.0 493 27.2
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 9.0e-24 115.9 80 68.8
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 3.4e-23 114.0 98 63.3
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 2.9e-22 110.9 430 27.9
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 3.7e-17 94.0 75 62.7
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.6e-15 87.8 65 64.6
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 1.4e-13 82.0 114 43.9
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.4e-13 82.0 62 62.9
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 3.0e-11 74.3 183 34.4


User provided reference genes

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