Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3329 Acer truncatum HOM05D007186 ORTHO05D008970 2.7e-94 348.6 171 100.0
Ciclev10016992m.g Citrus clementina HOM05D007186 ORTHO05D008970 1.3e-64 250.0 163 75.5
Potri.014G162700 Populus trichocarpa HOM05D007186 ORTHO05D008970 2.3e-61 239.2 166 75.3
MD09G1119400 Malus domestica HOM05D007186 ORTHO05D008970 5.2e-61 238.0 166 69.3
RcHm_v2.0_Chr2g0157151 Rosa chinensis HOM05D007186 ORTHO05D008970 2.0e-60 236.1 166 69.9
FAN05G2361 Fragaria x ananassa HOM05D007186 ORTHO05D008970 2.6e-60 235.7 167 70.1
CANSAT54G2500 Cannabis sativa HOM05D007186 ORTHO05D008970 5.8e-60 234.6 169 69.2
COL.COLO4_06941 Corchorus olitorius HOM05D007186 ORTHO05D008970 7.5e-60 234.2 162 72.2
FvH4_6g41490 Fragaria vesca HOM05D007186 ORTHO05D008970 7.5e-60 234.2 166 68.1
QL08p029418 Quercus lobata HOM05D007186 ORTHO05D008970 7.5e-60 234.2 163 69.3
Sabra14G0124100 Salix brachista HOM05D007186 ORTHO05D008970 9.8e-60 233.8 163 71.2
Prupe.3G204800 Prunus persica HOM05D007186 ORTHO05D008970 1.3e-59 233.4 158 70.3
FAN09G3526 Fragaria x ananassa HOM05D007186 ORTHO05D008970 1.7e-59 233.0 166 69.3
CiPaw.04G194300 Carya illinoinensis HOM05D007186 ORTHO05D008970 2.2e-59 232.6 154 73.4
TWI36G0211 Tripterygium wilfordii HOM05D007186 ORTHO05D008970 1.1e-58 230.3 162 71.6
AUR62015089 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.9e-58 229.6 163 65.6
AUR62044229 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.9e-58 229.6 163 65.6
AUR62044345 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.9e-58 229.6 163 65.6
Dinv07835 Davidia involucrata HOM05D007186 ORTHO05D008970 9.2e-58 227.3 164 68.3
CSS0038956 Camellia sinensis var. sinensis HOM05D007186 ORTHO05D008970 1.0e-56 223.8 166 65.1
Rhsim06G0171800 Rhododendron simsii HOM05D007186 ORTHO05D008970 1.0e-56 223.8 156 67.9
AUR62017547 Chenopodium quinoa HOM05D007186 ORTHO05D008970 3.0e-56 222.2 163 63.2
Gohir.D07G195800 Gossypium hirsutum HOM05D007186 ORTHO05D008970 5.6e-55 218.0 164 70.1
Gorai.001G219300 Gossypium raimondii HOM05D007186 ORTHO05D008970 1.6e-54 216.5 164 69.5
Eucgr.K00670 Eucalyptus grandis HOM05D007186 ORTHO05D008970 2.1e-54 216.1 155 66.5
GSVIVG01030422001 Vitis vinifera HOM05D007186 ORTHO05D008970 3.6e-54 215.3 150 70.7
PGR142G1014 Punica granatum HOM05D007186 ORTHO05D008970 5.2e-53 211.5 158 64.6
TAR624G0839 Trochodendron aralioides HOM05D007186 ORTHO05D008970 5.2e-53 211.5 166 63.3
Medtr5g097970 Medicago truncatula HOM05D007186 ORTHO05D008970 8.9e-53 210.7 164 65.2
THA.LOC104808856 Tarenaya hassleriana HOM05D007186 ORTHO05D008970 1.2e-52 210.3 166 63.3
VMungo0647G1315 Vigna mungo HOM05D007186 ORTHO05D008970 1.5e-52 209.9 165 66.7
PSO675G5362 Papaver somniferum HOM05D007186 ORTHO05D008970 2.6e-52 209.1 160 65.0
Phvul.008G287400 Phaseolus vulgaris HOM05D007186 ORTHO05D008970 3.4e-52 208.8 164 65.9
TPR.G15068 Trifolium pratense HOM05D007186 ORTHO05D008970 5.8e-52 208.0 160 65.6
Glyma.02G307400 Glycine max HOM05D007186 ORTHO05D008970 7.6e-52 207.6 165 66.1
Carub.0003s2639 Capsella rubella HOM05D007186 ORTHO05D008970 9.9e-52 207.2 166 61.4
Duzib138G0377 Durio zibethinus HOM05D007186 ORTHO05D008970 1.7e-51 206.5 147 71.4
Nitab4.5_0011275g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 2.2e-51 206.1 158 65.8
Haze_12721 Corylus avellana HOM05D007186 ORTHO05D008970 2.9e-51 205.7 235 49.8
Peaxi162Scf00147g01818 Petunia axillaris HOM05D007186 ORTHO05D008970 2.9e-51 205.7 158 62.0
Thhalv10002690m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 3.7e-51 205.3 166 58.4
Nitab4.5_0002877g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 1.9e-50 203.0 167 60.5
Psat2g003840 Pisum sativum HOM05D007186 ORTHO05D008970 1.9e-50 203.0 165 63.6
Solyc05g041430.3 Solanum lycopersicum HOM05D007186 ORTHO05D008970 3.2e-50 202.2 169 60.4
PGSC0003DMG400030273 Solanum tuberosum HOM05D007186 ORTHO05D008970 4.1e-50 201.8 172 61.0
Sopen05g025420 Solanum pennellii HOM05D007186 ORTHO05D008970 9.2e-50 200.7 169 59.8
Actinidia07891 Actinidia chinensis HOM05D007186 ORTHO05D008970 2.1e-49 199.5 142 65.5
Hund24136 Selenicereus undatus HOM05D007186 ORTHO05D008970 2.7e-49 199.1 163 59.5
Hma1.2p1_0133F.1_g061060 Hydrangea macrophylla HOM05D007186 ORTHO05D008970 4.6e-49 198.4 133 69.2
CsaV3_6G009340 Cucumis sativus L. HOM05D007186 ORTHO05D008970 6.0e-49 198.0 165 60.0
MELO3C019365.2 Cucumis melo HOM05D007186 ORTHO05D008970 7.8e-49 197.6 165 60.6
C03p55060 Brassica napus HOM05D007186 ORTHO05D008970 1.0e-48 197.2 166 56.0
BolC3t17781H Brassica oleracea HOM05D007186 ORTHO05D008970 1.0e-48 197.2 166 56.0
BcaC01g03189 Brassica carinata HOM05D007186 ORTHO05D008970 1.3e-48 196.8 166 56.6
Manes.13G063846 Manihot esculenta HOM05D007186 ORTHO05D008970 6.6e-48 194.5 148 68.2
AL3G42380 Arabidopsis lyrata HOM05D007186 ORTHO05D008970 8.6e-48 194.1 164 61.0
Sp3g23400 Schrenkiella parvula HOM05D007186 ORTHO05D008970 2.5e-47 192.6 166 57.8
arahy.Tifrunner.gnm1.ann1.HI5B62 Arachis hypogaea HOM05D007186 ORTHO05D008970 4.3e-47 191.8 152 62.5
LjContig00081g0025535 Lotus japonicus HOM05D000229 ORTHO05D008970 4.0e-45 185.3 154 61.7
Aqoxy1G02832 Aquilegia oxysepala HOM05D007186 ORTHO05D008970 6.8e-45 184.5 151 58.3
unitig_578.g16640 Utricularia gibba HOM05D007186 ORTHO05D008970 6.8e-45 184.5 166 54.8
Lalb_Chr04g0247191 Lupinus albus HOM05D007186 ORTHO05D008970 8.9e-45 184.1 147 62.6
AUR62044292 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.2e-44 183.7 163 56.4
ClCG02G009490 Citrullus lanatus HOM05D007186 ORTHO05D008970 1.5e-44 183.3 216 46.8
MBI19_g06151_MAGBIO Magnolia biondii HOM05D007186 ORTHO05D008970 1.5e-44 183.3 133 65.4
BraA03t13576Z Brassica rapa HOM05D007186 ORTHO05D008970 2.9e-43 179.1 150 56.0
ECA240G1183 Erigeron canadensis HOM05D007186 ORTHO05D008970 3.8e-43 178.7 158 57.0
HanXRQChr03g0075731 Helianthus annuus HOM05D007186 ORTHO05D008970 3.8e-43 178.7 167 56.9
arahy.Tifrunner.gnm1.ann1.CRYT1U Arachis hypogaea HOM05D007186 ORTHO05D008970 4.9e-43 178.3 176 56.8
HPP92_022801 Vanilla planifolia HOM05D007186 ORTHO05D008970 4.9e-43 178.3 150 58.7
BcaC01g03185 Brassica carinata HOM05D007186 ORTHO05D008970 8.4e-43 177.6 160 52.5
Lsat_1_v5_gn_9_105540 Lactuca sativa HOM05D007186 ORTHO05D008970 1.1e-42 177.2 148 59.5
BolC3t17784H Brassica oleracea HOM05D007186 ORTHO05D008970 4.2e-42 175.3 171 50.3
CARHR102760 Cardamine hirsuta HOM05D007186 ORTHO05D008970 4.2e-42 175.3 167 56.3
A03p44430 Brassica napus HOM05D007186 ORTHO05D008970 5.4e-42 174.9 150 55.3
C03p55120 Brassica napus HOM05D007186 ORTHO05D008970 5.4e-42 174.9 150 54.0
Glyma.14G005600 Glycine max HOM05D007186 ORTHO05D008970 3.9e-40 168.7 145 62.8
ATR0712G003 Amborella trichopoda HOM05D007186 ORTHO05D008970 6.6e-40 167.9 142 57.0
BcaB08g34487 Brassica carinata HOM05D007186 ORTHO05D008970 6.6e-40 167.9 140 55.7
Migut.M00010 Erythranthe guttata HOM05D007186 ORTHO05D008970 6.6e-40 167.9 167 53.3
Lj8A132T57 Lonicera japonica HOM05D007186 ORTHO05D008970 2.5e-39 166.0 172 54.7
BcaC01g03187 Brassica carinata HOM05D007186 ORTHO05D008970 9.6e-39 164.1 129 57.4
Sed0024069 Sechium edule HOM05D007186 ORTHO05D008970 2.1e-38 162.9 145 57.9
Oeu040479.1 Olea europaea HOM05D007186 ORTHO05D008970 3.8e-35 152.1 114 67.5
SalBow7G1582 Salvia bowleyana HOM05D000037 ORTHO05D000150 7.1e-34 147.9 144 52.8
SEGI_21441 Sequoiadendron giganteum HOM05D007186 ORTHO05D008970 1.2e-33 147.1 151 45.7
Aa31sc53G20 Aethionema arabicum HOM05D007186 ORTHO05D006113 2.1e-33 146.4 150 54.0
Zm00001eb245650 Zea mays HOM05D007186 ORTHO05D008970 2.3e-32 142.9 128 56.2
DCAR_032166 Daucus carota HOM05D000693 ORTHO05D008970 1.9e-31 139.8 105 61.0
Os02g0588600 Oryza sativa ssp. japonica HOM05D007186 ORTHO05D008970 1.3e-30 137.1 135 52.6
FAN14G0401 Fragaria x ananassa HOM05D007186 ORTHO05D008970 2.8e-30 136.0 97 70.1
FAN02G3692 Fragaria x ananassa HOM05D007186 ORTHO05D008970 1.3e-27 127.1 96 67.7
Thecc.01G185600 Theobroma cacao HOM05D007186 ORTHO05D008970 4.9e-27 125.2 92 72.8
Gohir.A07G189700 Gossypium hirsutum HOM05D007186 ORTHO05D008970 1.9e-26 123.2 110 63.6
vmacro12130 Vaccinium macrocarpon HOM05D007186 ORTHO05D008970 2.7e-25 119.4 148 48.0
Sc20g0003870 Simmondsia chinensis HOM05D007186 ORTHO05D008970 1.8e-24 116.7 105 48.6
arahy.Tifrunner.gnm1.ann1.I316DY Arachis hypogaea HOM05D007186 ORTHO05D008970 6.7e-24 114.8 93 59.1
EL10Ac9g22768 Beta vulgaris HOM05D007186 ORTHO05D008970 4.3e-23 112.1 83 68.7
Nn1g07413 Nelumbo nucifera HOM05D007186 ORTHO05D008970 4.3e-23 112.1 74 67.6
MSTRG.6661 Avicennia marina HOM05D007186 ORTHO05D008970 5.6e-23 111.7 91 64.8
Pp3c15_5880 Physcomitrium patens HOM05D007186 ORTHO05D008970 9.6e-23 110.9 157 39.5
SMO364G0535 Selaginella moellendorffii HOM05D007186 ORTHO05D008970 5.3e-21 105.1 138 40.6
arahy.Tifrunner.gnm1.ann1.ZIY68Y Arachis hypogaea HOM05D007186 ORTHO05D008970 2.0e-20 103.2 87 58.6
Eucgr.K00669 Eucalyptus grandis HOM05D007186 ORTHO05D008970 4.5e-20 102.1 73 63.0
AUR62025215 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.0e-19 100.9 75 68.0
Mapoly0123s0026 Marchantia polymorpha HOM05D007186 ORTHO05D008970 4.2e-18 95.5 147 35.4
Sopen05g025410 Solanum pennellii HOM05D007186 ORTHO05D008970 1.1e-13 80.9 60 68.3
Thhalv10002943m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 6.9e-13 78.2 73 46.6
arahy.Tifrunner.gnm1.ann1.5R4F72 Arachis hypogaea HOM05D007186 ORTHO05D008970 1.2e-12 77.4 112 41.1
AT2G04790 Arabidopsis thaliana HOM05D007186 ORTHO05D008970 2.0e-12 76.6 59 66.1
MD17G1110300 Malus domestica HOM05D007186 ORTHO05D008970 1.1e-10 70.9 42 78.6
MCO11G099 Micromonas commoda HOM05D007186 ORTHO05D008970 5.1e-08 62.0 166 27.1


User provided reference genes

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