Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 0.0e+00 1459.5 758 100.0
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 0.0e+00 1344.3 706 99.0
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 0.0e+00 1171.4 761 79.8
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 0.0e+00 1107.4 765 74.6
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 0.0e+00 1107.0 762 75.1
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.6e-311 1072.4 778 71.2
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 2.1e-311 1072.0 761 73.1
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.6e-308 1062.4 762 71.1
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 3.7e-308 1061.2 760 72.5
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 4.8e-308 1060.8 745 74.0
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 4.1e-307 1057.7 757 73.2
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 2.6e-306 1055.0 766 70.8
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 4.5e-306 1054.3 767 71.1
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 4.2e-304 1047.7 761 71.5
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 3.6e-303 1044.6 758 71.8
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 7.9e-303 1043.5 759 71.5
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 2.0e-301 1038.9 761 70.8
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 9.7e-301 1036.6 755 71.8
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 2.8e-300 1035.0 761 70.6
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 6.9e-299 1030.4 766 70.6
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.5e-298 1027.7 772 69.9
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 3.8e-297 1024.6 758 70.8
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 5.5e-296 1020.8 755 70.6
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 5.5e-296 1020.8 759 69.2
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 4.4e-293 1011.1 766 68.5
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.7e-292 1008.1 768 68.6
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.4e-291 1005.4 767 69.2
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.7e-289 999.2 764 67.7
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 5.0e-289 997.7 765 66.9
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.0e-286 989.9 765 66.4
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 1.8e-286 989.2 764 67.3
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 3.0e-286 988.4 759 69.8
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 1.3e-284 983.0 715 70.5
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 5.3e-283 977.6 766 66.8
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 3.5e-282 974.9 762 66.4
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 2.2e-281 972.2 763 66.6
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 1.5e-280 969.5 759 65.9
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 7.2e-280 967.2 762 65.2
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 7.2e-280 967.2 734 69.3
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 6.1e-279 964.1 772 65.4
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 3.0e-278 961.8 760 65.8
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 4.0e-278 961.4 807 63.6
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 2.0e-277 959.1 756 64.8
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 1.7e-276 956.1 767 65.8
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 3.7e-276 954.9 762 65.2
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 2.2e-273 945.7 790 63.7
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 2.2e-273 945.7 761 64.5
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 5.0e-273 944.5 759 65.0
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 8.5e-273 943.7 766 64.5
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 8.5e-273 943.7 774 64.5
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 5.5e-272 941.0 762 64.6
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 1.2e-271 939.9 784 63.6
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 2.3e-270 935.6 761 64.0
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 2.6e-269 932.2 762 64.4
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 3.4e-269 931.8 789 62.5
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 9.8e-269 930.2 763 63.6
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 9.8e-269 930.2 756 62.4
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.2e-266 923.3 761 63.6
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 1.9e-264 916.0 771 62.8
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 4.2e-264 914.8 777 62.2
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 1.0e-262 910.2 762 63.6
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.8e-262 909.4 763 61.7
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 1.2e-261 906.7 777 61.4
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 7.5e-261 904.0 685 69.2
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.3e-260 903.3 771 61.6
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 2.2e-260 902.5 759 60.3
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 2.8e-260 902.1 766 61.6
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 4.9e-260 901.4 775 61.7
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.0e-258 896.0 763 61.3
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 2.8e-255 885.6 763 60.8
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 6.4e-252 874.4 760 61.2
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.2e-250 870.2 760 61.6
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 4.6e-250 868.2 578 76.6
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 5.0e-249 864.8 727 63.1
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 1.5e-248 863.2 769 60.2
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 2.5e-248 862.4 763 60.6
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 4.3e-248 861.7 791 58.0
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 8.1e-247 857.4 732 62.0
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 1.8e-246 856.3 804 56.6
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 3.9e-241 838.6 763 59.8
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 5.6e-240 834.7 762 57.7
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.6e-239 833.2 574 73.5
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 6.8e-238 827.8 736 63.2
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.4e-235 820.1 705 63.0
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 3.2e-235 818.9 743 59.5
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 8.6e-233 810.8 763 56.1
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 8.6e-233 810.8 563 74.6
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 1.7e-228 796.6 730 60.7
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 4.2e-227 792.0 570 72.3
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 4.2e-227 792.0 570 72.3
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 1.1e-222 777.3 570 71.2
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 3.2e-219 765.8 763 56.1
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 4.3e-216 755.4 577 67.1
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 3.6e-215 752.3 516 75.4
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 1.8e-214 750.0 759 53.5
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 9.0e-214 747.7 573 67.4
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 5.5e-211 738.4 660 59.7
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.8e-209 733.4 761 52.4
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.3e-207 727.2 762 53.5
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 2.1e-207 726.5 570 67.5
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 1.2e-205 720.7 743 52.9
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 4.9e-204 715.3 642 59.3
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.6e-197 693.0 527 69.4
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 4.2e-195 685.6 529 66.7
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 6.1e-194 681.8 502 69.5
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.0e-193 679.5 462 75.8
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 1.5e-181 640.6 762 48.2
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 3.5e-165 586.3 632 51.7
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 3.5e-157 559.7 778 41.9
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.9e-156 556.6 527 56.2
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.9e-143 513.5 482 57.7
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 1.4e-137 494.6 333 74.2
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 2.3e-137 493.8 443 57.1
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 4.4e-136 489.6 532 53.0
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 5.4e-126 456.1 326 71.5
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 5.6e-115 419.5 287 74.9
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 4.7e-114 416.4 284 73.9
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 6.4e-111 406.0 476 49.4
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 1.7e-108 397.9 385 57.7
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 9.9e-104 382.1 813 30.6
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 1.1e-94 352.1 286 66.1
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 5.5e-94 349.7 734 30.8
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 1.1e-91 342.0 285 66.0
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 6.2e-90 336.3 230 74.8
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 6.9e-89 332.8 182 96.2
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.5e-83 315.1 769 29.3
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 1.5e-80 305.1 345 44.9
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 1.3e-76 292.0 177 83.1
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 2.6e-72 277.7 217 63.1
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 6.7e-68 263.1 214 64.5
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 1.4e-60 238.8 237 55.7
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 4.8e-58 230.3 748 26.5
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 7.2e-54 216.5 304 43.8
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.0e-48 198.4 417 34.8
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.3e-47 195.7 417 34.5
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 7.2e-46 189.9 183 55.7
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 1.8e-44 185.3 142 70.4
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 2.0e-27 128.6 109 70.6
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 2.9e-26 124.8 95 67.4
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.9e-26 124.8 80 76.2
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 4.1e-25 120.9 88 68.2
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.5e-22 112.5 292 29.5
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.6e-21 109.0 243 34.6
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.8e-20 103.6 76 69.7
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 2.2e-18 98.6 113 48.7
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.7e-15 89.0 68 66.2
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-11 76.3 89 39.3
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 9.9e-11 73.2 107 43.9
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 9.2e-09 66.6 125 33.6
Glyma.20G074700 Glycine max HOM05D004734 ORTHO05D213795 6.6e-07 60.5 46 67.4
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 1.9e-06 58.9 72 47.2
Nn5g29172 Nelumbo nucifera HOM05D004734 ORTHO05D272015 9.5e-06 56.6 51 52.9


User provided reference genes

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