Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 0.0e+00 1535.8 796 100.0
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 0.0e+00 1345.5 706 99.0
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 0.0e+00 1078.2 709 78.7
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 2.2e-295 1018.8 718 73.3
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 4.1e-294 1014.6 729 72.4
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 5.4e-286 987.6 715 71.5
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 1.6e-285 986.1 714 70.7
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 3.5e-285 984.9 711 72.3
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.3e-284 983.0 745 68.9
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 4.3e-283 978.0 692 73.3
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.1e-282 975.7 710 70.1
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 3.1e-281 971.8 708 71.0
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 6.9e-281 970.7 718 69.5
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 9.9e-280 966.8 706 71.0
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 9.9e-280 966.8 709 70.8
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.4e-279 964.1 703 71.4
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 8.4e-279 963.8 715 69.9
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 9.3e-278 960.3 711 70.0
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 7.8e-277 957.2 709 70.2
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 9.6e-275 950.3 703 70.3
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 2.1e-274 949.1 709 69.5
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 1.1e-273 946.8 709 69.3
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 6.9e-273 944.1 711 69.5
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 3.4e-272 941.8 714 69.3
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 5.4e-270 934.5 738 66.5
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.6e-269 932.9 715 68.7
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 3.3e-267 925.2 710 68.5
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.1e-265 920.2 716 67.2
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 9.0e-265 917.1 714 66.7
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 3.4e-264 915.2 735 64.4
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.4e-262 909.8 712 66.0
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 9.3e-262 907.1 710 66.5
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 3.9e-260 901.7 712 66.0
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 2.5e-259 899.0 713 66.2
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 1.6e-258 896.3 707 68.5
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.8e-257 892.9 713 64.2
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 4.0e-257 891.7 751 63.8
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 9.0e-257 890.6 771 62.1
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 7.6e-256 887.5 731 63.9
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 2.2e-255 885.9 725 64.1
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 2.2e-255 885.9 712 64.0
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 1.6e-253 879.8 729 63.5
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 2.7e-253 879.0 731 62.7
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 3.9e-252 875.2 718 62.7
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 1.5e-251 873.2 706 64.4
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 3.3e-251 872.1 789 60.5
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 5.7e-251 871.3 717 64.3
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 5.7e-251 871.3 717 64.3
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 2.8e-250 869.0 731 62.8
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 6.9e-249 864.4 745 61.9
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 9.0e-249 864.0 721 63.0
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 2.0e-248 862.8 717 62.9
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 3.4e-248 862.1 764 60.7
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 2.2e-247 859.4 731 61.8
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 8.5e-247 857.4 736 61.8
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 8.5e-247 857.4 709 60.9
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 3.2e-246 855.5 711 62.6
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 6.1e-245 851.3 723 61.8
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 7.4e-243 844.3 722 61.9
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 1.3e-242 843.6 727 61.6
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 2.8e-242 842.4 731 61.6
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 3.1e-241 839.0 751 59.8
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 4.1e-241 838.6 772 60.0
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 4.5e-240 835.1 727 60.8
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.1e-238 830.5 709 59.2
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 7.9e-237 824.3 725 60.6
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.0e-236 823.9 734 59.3
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 3.9e-236 822.0 716 59.6
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 3.9e-236 822.0 633 68.1
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 1.5e-235 820.1 734 59.1
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 2.6e-235 819.3 760 59.3
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 9.7e-235 817.4 714 60.1
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 2.9e-231 805.8 767 56.7
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 4.2e-230 802.0 717 61.5
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 3.3e-227 792.3 699 63.2
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 8.2e-226 787.7 735 58.6
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 2.4e-225 786.2 713 59.2
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 7.0e-225 784.6 764 54.8
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.2e-224 783.9 710 59.0
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 3.5e-224 782.3 752 55.7
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 3.8e-223 778.9 526 75.5
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 1.9e-222 776.5 721 58.0
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 9.4e-222 774.2 711 58.9
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.1e-217 759.2 722 55.7
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 1.6e-216 756.9 515 75.9
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 5.9e-216 755.0 577 67.1
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.5e-214 750.4 711 58.1
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 9.4e-214 747.7 527 72.1
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 1.2e-211 740.7 723 54.1
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 5.4e-209 731.9 571 68.5
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 1.7e-202 710.3 518 71.4
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.2e-200 704.1 518 71.0
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 1.9e-198 696.8 518 70.3
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 4.0e-196 689.1 705 54.9
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 9.8e-195 684.5 502 69.7
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 6.4e-194 681.8 716 51.8
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 8.3e-194 681.4 750 50.5
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 7.8e-192 674.9 526 65.8
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.2e-189 665.2 751 49.7
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 4.9e-186 655.6 612 57.5
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 7.0e-185 651.7 722 51.2
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 7.8e-184 648.3 560 62.7
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 1.4e-180 637.5 590 58.1
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 9.5e-174 614.8 482 65.1
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.8e-171 605.5 477 67.3
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.3e-166 589.7 410 73.9
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 3.9e-159 566.2 713 46.3
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 1.0e-143 515.0 592 49.0
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 3.0e-143 513.5 482 57.7
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 1.1e-137 495.0 438 57.5
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 1.4e-137 494.6 333 74.2
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 1.9e-137 494.2 768 39.1
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 9.3e-137 491.9 532 53.2
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 7.9e-136 488.8 517 52.2
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 5.7e-126 456.1 326 71.5
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 5.0e-114 416.4 284 73.9
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 8.8e-111 405.6 476 49.4
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 5.9e-91 339.7 240 72.1
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 6.6e-90 336.3 230 74.8
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 1.6e-88 331.6 182 95.6
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 1.4e-87 328.6 801 28.1
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 4.4e-86 323.6 375 50.9
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 5.4e-84 316.6 226 73.5
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 1.6e-80 305.1 345 44.9
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 6.4e-77 293.1 702 27.9
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 1.4e-76 292.0 177 83.1
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.9e-73 281.6 618 29.6
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 2.1e-72 278.1 246 61.4
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 2.8e-72 277.7 217 63.1
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 7.0e-68 263.1 214 64.5
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 1.4e-60 238.8 237 55.7
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 2.0e-54 218.4 300 44.0
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.1e-48 198.4 417 34.8
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 8.1e-48 196.4 640 26.9
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.4e-47 195.7 417 34.5
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 5.8e-46 190.3 183 55.7
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 3.0e-26 124.8 95 67.4
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 3.0e-26 124.8 80 76.2
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 4.3e-25 120.9 88 68.2
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.2e-21 108.6 243 34.6
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 4.2e-20 104.4 90 64.4
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 7.1e-20 103.6 76 69.7
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 2.3e-18 98.6 113 48.7
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.8e-15 89.0 68 66.2
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-11 76.3 89 39.3
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 1.0e-10 73.2 107 43.9
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 7.4e-09 67.0 125 33.6
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 3.1e-07 61.6 63 63.5
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 4.1e-07 61.2 263 22.1
Glyma.20G074700 Glycine max HOM05D004734 ORTHO05D213795 6.9e-07 60.5 46 67.4


User provided reference genes

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