Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 0.0e+00 1156.4 569 100.0
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 1.7e-273 945.7 569 81.5
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 4.3e-261 904.4 566 77.0
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 3.6e-260 901.4 565 76.5
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 1.8e-259 899.0 566 75.8
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 5.3e-259 897.5 566 77.6
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 1.5e-258 896.0 565 75.2
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 3.4e-258 894.8 565 75.0
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 3.8e-257 891.3 565 75.0
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 9.3e-256 886.7 566 74.6
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.6e-255 885.9 566 73.9
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.1e-255 885.6 566 74.0
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 1.8e-254 882.5 566 73.9
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 4.3e-253 877.9 564 75.0
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 1.6e-252 875.9 565 73.5
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 3.7e-252 874.8 587 73.6
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 4.8e-252 874.4 565 74.9
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 5.3e-251 870.9 565 74.0
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 3.5e-247 858.2 565 72.7
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.6e-247 857.8 617 67.3
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 3.9e-246 854.7 529 77.7
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 8.7e-246 853.6 545 73.8
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 2.1e-244 849.0 606 68.5
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 8.2e-244 847.0 565 72.2
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 1.4e-243 846.3 567 71.6
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 2.4e-243 845.5 567 72.0
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 1.2e-242 843.2 565 72.0
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 2.6e-242 842.0 564 70.7
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 5.0e-241 837.8 567 69.8
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 1.1e-240 836.6 567 70.4
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 7.2e-240 833.9 565 71.0
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 4.6e-239 831.2 565 71.7
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 1.8e-238 829.3 565 70.3
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 8.2e-236 820.5 565 70.3
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 1.1e-235 820.1 569 69.2
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 2.4e-235 818.9 569 68.7
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 3.4e-234 815.1 569 68.7
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 4.5e-234 814.7 565 69.7
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 4.5e-234 814.7 567 69.1
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 5.9e-234 814.3 569 68.7
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 5.9e-234 814.3 569 68.9
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 2.9e-233 812.0 569 68.0
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 1.1e-232 810.1 564 68.8
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 1.2e-231 806.6 563 68.7
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 1.6e-231 806.2 566 68.7
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 2.1e-231 805.8 570 68.8
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 1.5e-229 799.7 565 67.6
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 2.0e-229 799.3 567 68.4
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 1.5e-226 789.6 571 68.7
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 2.9e-225 785.4 529 71.8
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 3.8e-225 785.0 567 67.0
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 8.5e-225 783.9 568 68.1
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 1.4e-224 783.1 563 67.3
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 1.2e-223 780.0 567 66.3
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 4.4e-221 771.5 564 66.3
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 1.3e-220 770.0 564 66.5
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 1.7e-220 769.6 563 65.5
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 8.2e-220 767.3 546 67.4
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 2.4e-219 765.8 529 68.8
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 7.0e-219 764.2 580 67.1
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 1.4e-214 750.0 566 63.8
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 3.0e-214 748.8 566 65.0
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 4.0e-214 748.4 563 65.4
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 5.2e-214 748.0 566 65.9
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 3.3e-213 745.3 563 64.8
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 3.3e-213 745.3 566 63.4
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 4.4e-213 745.0 566 65.2
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 9.7e-213 743.8 527 68.3
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 1.2e-210 736.9 506 68.2
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 5.9e-210 734.6 529 69.0
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 5.2e-206 721.5 529 66.7
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 3.4e-205 718.8 530 67.5
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 8.3e-204 714.1 592 62.2
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 2.3e-201 706.1 459 73.9
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 4.2e-200 701.8 460 73.9
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 2.2e-196 689.5 460 72.4
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 2.7e-194 682.6 542 63.1
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 1.3e-193 680.2 560 60.0
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 1.4e-187 660.2 500 66.0
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 6.6e-185 651.4 483 66.5
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 1.8e-182 643.3 688 51.3
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 2.4e-179 632.9 564 56.2
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.1e-176 624.0 528 59.1
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 2.5e-176 622.9 528 59.3
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 7.8e-170 601.3 598 54.0
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 3.9e-169 599.0 564 53.4
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 7.6e-165 584.7 587 52.6
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 3.3e-160 569.3 483 58.8
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 9.9e-157 557.8 532 52.6
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 2.3e-153 546.6 407 65.4
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 7.6e-133 478.4 299 74.6
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 3.2e-123 446.4 341 63.6
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 1.8e-121 440.7 319 67.4
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 1.0e-116 424.9 276 69.2
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 7.2e-115 418.7 319 65.2
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 1.2e-114 417.9 346 62.4
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 7.9e-114 415.2 716 36.6
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 4.1e-110 402.9 595 39.0
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 3.8e-100 369.8 303 58.7
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 8.0e-98 362.1 272 65.4
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.0e-97 361.7 267 65.5
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 3.3e-96 356.7 590 34.1
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 1.3e-92 344.7 275 61.8
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 1.5e-91 341.3 266 63.2
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 2.1e-82 310.8 244 60.2
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 1.4e-81 308.1 203 71.9
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 1.9e-67 261.2 193 61.7
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 1.2e-61 241.9 153 75.8
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 6.0e-61 239.6 212 57.1
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 1.7e-60 238.0 168 66.7
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 1.2e-58 231.9 140 72.1
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 1.8e-57 228.0 310 41.9
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 9.9e-56 222.2 185 60.0
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 8.9e-49 199.1 170 63.5
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.4e-46 191.0 155 61.3
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 6.2e-42 176.4 168 55.4
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 2.6e-32 144.4 82 81.7
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 7.6e-32 142.9 94 66.0
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 2.3e-28 131.3 145 51.0
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 2.1e-18 98.2 50 88.0
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 4.5e-16 90.5 121 42.1
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 1.3e-15 89.0 88 51.1
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 1.6e-13 82.0 81 51.9
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 6.3e-10 70.1 60 56.7


User provided reference genes

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