Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 0.0e+00 1341.6 685 100.0
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 2.5e-271 938.7 681 71.5
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 3.3e-263 911.8 659 70.1
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 3.3e-263 911.8 688 69.2
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 7.0e-258 894.0 681 67.1
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 8.6e-256 887.1 687 67.5
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 8.0e-254 880.6 684 67.5
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 3.3e-247 858.6 684 65.8
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.8e-246 855.5 681 65.1
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.1e-245 853.6 681 65.3
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.5e-244 849.7 641 68.8
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.5e-244 849.7 686 65.7
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.7e-240 836.3 670 65.7
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 5.0e-240 834.7 684 64.2
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 8.6e-240 833.9 676 64.9
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 8.6e-240 833.9 684 64.5
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 3.3e-239 832.0 687 65.2
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 8.3e-235 817.4 755 59.5
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 3.0e-232 808.9 692 60.0
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 2.1e-230 802.7 684 62.0
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 6.2e-230 801.2 621 67.1
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 2.4e-229 799.3 690 60.0
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 5.2e-229 798.1 684 61.7
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 2.6e-228 795.8 783 56.7
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 2.9e-227 792.3 693 61.6
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 6.4e-227 791.2 689 60.7
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 4.6e-225 785.0 683 60.0
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 5.1e-224 781.6 701 57.9
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.9e-223 779.6 687 60.1
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 4.3e-223 778.5 667 60.9
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 6.2e-222 774.6 691 59.0
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 2.4e-221 772.7 690 59.4
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 2.4e-221 772.7 609 65.2
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 3.1e-221 772.3 724 59.1
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 6.9e-221 771.2 704 58.1
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.5e-220 770.0 684 61.3
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 2.0e-220 769.6 692 58.7
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 2.0e-220 769.6 662 61.5
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 3.4e-220 768.8 701 57.9
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 5.8e-220 768.1 692 58.7
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 7.6e-220 767.7 663 60.6
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 3.8e-219 765.4 682 59.7
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 2.4e-218 762.7 739 57.8
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 2.4e-218 762.7 664 60.1
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 7.1e-218 761.1 649 60.4
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.5e-217 758.8 731 57.3
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 1.0e-216 757.3 695 58.6
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 1.3e-216 756.9 625 63.7
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 6.6e-216 754.6 695 58.4
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 6.6e-216 754.6 697 57.5
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 5.6e-215 751.5 672 59.2
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 5.6e-215 751.5 711 58.6
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.6e-214 750.0 741 56.4
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 1.1e-213 747.3 724 56.8
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.4e-213 746.9 724 56.6
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 2.4e-213 746.1 691 57.6
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 2.4e-213 746.1 672 60.1
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 2.4e-213 746.1 689 58.5
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 5.3e-213 745.0 677 58.6
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.6e-212 742.7 748 55.9
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 2.6e-212 742.7 661 60.7
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 3.8e-211 738.8 662 59.5
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.4e-210 736.1 656 59.0
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 7.9e-209 731.1 701 56.2
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.3e-208 730.3 694 58.1
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 1.3e-208 730.3 671 58.1
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 8.7e-208 727.6 641 60.4
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 1.3e-206 723.8 688 54.2
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 1.6e-206 723.4 648 59.6
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 3.7e-206 722.2 699 56.4
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.4e-205 720.3 667 58.2
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 3.1e-205 719.2 678 57.2
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 5.3e-205 718.4 675 56.1
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 6.9e-205 718.0 660 59.2
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 4.5e-204 715.3 681 56.7
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.7e-203 713.4 638 59.4
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.9e-203 712.6 651 57.6
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 1.1e-202 710.7 688 55.7
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 1.1e-202 710.7 693 55.7
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 1.4e-202 710.3 693 55.7
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 2.4e-202 709.5 699 56.1
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 3.2e-202 709.1 657 58.6
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.2e-201 707.2 689 55.3
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 1.0e-200 704.1 695 55.1
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.9e-200 702.2 610 60.8
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 2.5e-199 699.5 651 59.4
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 2.5e-199 699.5 695 55.1
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 1.3e-198 697.2 673 54.5
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 2.1e-198 696.4 554 67.0
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 2.8e-198 696.0 696 54.6
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 1.2e-196 690.6 628 57.3
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 1.5e-196 690.3 642 57.3
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 5.8e-196 688.3 673 56.0
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 1.7e-195 686.8 674 55.8
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 4.9e-195 685.3 674 55.6
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 8.4e-195 684.5 674 55.5
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 1.1e-194 684.1 693 56.6
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.5e-193 679.1 656 53.4
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 4.6e-193 678.7 685 54.9
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.3e-191 672.5 640 56.2
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 1.1e-189 667.5 668 55.2
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.2e-188 664.1 690 54.2
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 3.4e-188 662.5 663 55.2
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 7.7e-188 661.4 674 54.2
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 3.8e-187 659.1 658 54.6
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.4e-186 657.1 640 55.0
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 2.3e-184 649.8 651 55.1
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.9e-184 649.0 666 55.0
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 6.7e-184 648.3 614 56.2
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 5.7e-183 645.2 662 54.5
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 1.7e-182 643.7 580 60.3
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 6.3e-182 641.7 664 52.1
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 4.2e-178 629.0 659 52.8
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.6e-177 625.9 671 51.6
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 7.9e-177 624.8 641 52.9
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 1.4e-176 624.0 678 51.3
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 3.0e-176 622.9 625 56.3
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 1.1e-175 620.9 592 58.8
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 3.3e-175 619.4 691 50.2
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 7.4e-175 618.2 698 51.0
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 1.1e-173 614.4 668 53.9
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 8.0e-169 598.2 605 54.4
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.1e-167 594.3 488 62.5
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 2.2e-166 590.1 655 50.8
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 1.6e-164 583.9 647 49.1
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 1.7e-163 580.5 678 50.0
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 9.4e-162 574.7 689 49.5
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 8.0e-161 571.6 461 65.7
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 2.7e-156 556.6 669 49.3
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 3.8e-155 552.7 517 56.7
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 5.5e-154 548.9 683 46.3
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 7.2e-154 548.5 688 48.1
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 2.2e-150 537.0 497 58.4
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 6.8e-144 515.4 423 64.5
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.5e-138 497.7 512 55.3
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 5.0e-131 472.6 739 39.9
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.5e-122 443.7 406 57.9
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.0e-119 434.1 649 41.4
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 6.4e-118 429.1 649 40.4
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.3e-115 421.4 669 39.9
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 2.5e-114 417.2 637 40.8
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 4.3e-114 416.4 641 41.7
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 4.3e-114 416.4 645 40.8
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 7.8e-108 395.6 629 39.9
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 5.8e-103 379.4 653 39.7
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 4.2e-101 373.2 729 37.0
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 9.3e-101 372.1 801 34.5
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 3.5e-100 370.2 781 35.5
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 5.3e-96 356.3 666 38.1
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 1.1e-93 348.6 607 37.6
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 3.4e-87 327.0 496 41.7
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 1.1e-85 322.0 734 33.0
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 7.1e-85 319.3 366 47.8
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 1.6e-84 318.2 516 39.9
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 1.1e-80 305.4 298 57.4
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.6e-79 300.8 526 39.2
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.9e-77 294.7 209 70.8
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.7e-73 280.4 213 67.1
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 3.6e-68 263.8 502 34.7
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 2.9e-62 244.2 333 39.9
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 6.1e-36 156.8 273 37.4
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 4.1e-32 144.1 105 70.5
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.9e-25 121.3 112 57.1
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 4.6e-23 114.0 186 39.8
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.8e-19 102.1 66 72.7
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.7e-17 95.5 109 48.6
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 2.2e-17 95.1 70 64.3
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 7.3e-13 80.1 52 73.1
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 1.6e-12 79.0 164 32.9
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 3.6e-12 77.8 158 34.8
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.0e-10 72.0 61 57.4
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 8.3e-09 66.6 54 57.4
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 4.1e-08 64.3 52 59.6
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 1.0e-06 59.7 49 57.1


User provided reference genes

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