Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3249 Acer truncatum HOM05D007498 ORTHO05D009384 6.9e-48 193.7 104 100.0
Ciclev10015493m.g Citrus clementina HOM05D007498 ORTHO05D009384 2.0e-31 139.0 95 71.6
CSS0038240 Camellia sinensis var. sinensis HOM05D007498 ORTHO05D009384 4.5e-31 137.9 91 73.6
QL08p030918 Quercus lobata HOM05D007498 ORTHO05D009384 2.9e-30 135.2 91 74.7
Dinv08726 Davidia involucrata HOM05D007498 ORTHO05D009384 6.5e-30 134.0 91 71.4
MD17G1103400 Malus domestica HOM05D007498 ORTHO05D009384 2.5e-29 132.1 94 69.1
RcHm_v2.0_Chr2g0158311 Rosa chinensis HOM05D007498 ORTHO05D009384 3.2e-29 131.7 93 71.0
CANSAT64G1398 Cannabis sativa HOM05D007498 ORTHO05D009384 4.2e-29 131.3 91 69.2
FvH4_6g42420 Fragaria vesca HOM05D007498 ORTHO05D009384 5.5e-29 131.0 93 69.9
FAN05G5059 Fragaria x ananassa HOM05D007498 ORTHO05D009384 5.5e-29 131.0 93 68.8
Hma1.2p1_2381F.1_g320980 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 7.1e-29 130.6 94 70.2
Prupe.3G211200 Prunus persica HOM05D007498 ORTHO05D009384 9.3e-29 130.2 93 68.8
Hma1.2p1_0445F.1_g154420 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 1.2e-28 129.8 94 69.1
Cpa.g.sc132.15 Carica papaya HOM05D007498 ORTHO05D009384 2.1e-28 129.0 103 65.0
MD09G1113300 Malus domestica HOM05D007498 ORTHO05D009384 4.6e-28 127.9 94 67.0
Peaxi162Scf00100g01524 Petunia axillaris HOM05D007498 ORTHO05D009384 1.0e-27 126.7 91 69.2
GSVIVG01030496001 Vitis vinifera HOM05D007498 ORTHO05D009384 1.0e-27 126.7 91 67.0
CiPaw.03G155900 Carya illinoinensis HOM05D007498 ORTHO05D009384 2.3e-27 125.6 91 67.0
vmacro12166 Vaccinium macrocarpon HOM05D007498 ORTHO05D009384 2.3e-27 125.6 91 64.8
Actinidia09741 Actinidia chinensis HOM05D007498 ORTHO05D009384 5.1e-27 124.4 91 65.9
Nitab4.5_0006063g0010 Nicotiana tabacum HOM05D007498 ORTHO05D009384 5.1e-27 124.4 91 68.1
Solyc05g042050.4 Solanum lycopersicum HOM05D007498 ORTHO05D009384 5.1e-27 124.4 91 65.9
Sopen05g026100 Solanum pennellii HOM05D007498 ORTHO05D009384 5.1e-27 124.4 91 65.9
TWI18G0826 Tripterygium wilfordii HOM05D007498 ORTHO05D009384 5.1e-27 124.4 91 65.9
Lsat_1_v5_gn_7_95281 Lactuca sativa HOM05D007498 ORTHO05D009384 1.1e-26 123.2 93 62.4
Actinidia13735 Actinidia chinensis HOM05D007498 ORTHO05D009384 5.7e-26 120.9 91 63.7
Lj6g0022389 Lotus japonicus HOM05D007498 ORTHO05D009384 9.6e-26 120.2 90 65.6
Duzib138G1101 Durio zibethinus HOM05D007498 ORTHO05D009384 1.3e-25 119.8 91 63.7
Lsat_1_v5_gn_5_123880 Lactuca sativa HOM05D007498 ORTHO05D009384 2.1e-25 119.0 93 59.1
Sabra14G0119400 Salix brachista HOM05D007498 ORTHO05D009384 2.1e-25 119.0 92 59.8
Thecc.01G181300 Theobroma cacao HOM05D007498 ORTHO05D009384 2.1e-25 119.0 92 62.0
TAR629G3061 Trochodendron aralioides HOM05D007498 ORTHO05D009384 2.1e-25 119.0 91 64.8
Rhsim06G0166900 Rhododendron simsii HOM05D007498 ORTHO05D009384 2.8e-25 118.6 104 57.7
Eucgr.A01096 Eucalyptus grandis HOM05D007498 ORTHO05D009384 3.7e-25 118.2 92 62.0
Rhsim09G0054300 Rhododendron simsii HOM05D007498 ORTHO05D009384 3.7e-25 118.2 104 56.7
MBI19_g41387_MAGBIO Magnolia biondii HOM05D007498 ORTHO05D009384 6.2e-25 117.5 91 61.5
Manes.12G070200 Manihot esculenta HOM05D007498 ORTHO05D009384 1.4e-24 116.3 91 63.7
HanXRQChr12g0373631 Helianthus annuus HOM05D007498 ORTHO05D009384 1.5e-23 112.8 93 59.1
Phvul.006G012811 Phaseolus vulgaris HOM05D007498 ORTHO05D009384 2.0e-23 112.5 90 62.2
Aqoxy1G04193 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 2.6e-23 112.1 93 62.4
Cc05_g03070 Coffea canephora HOM05D007498 ORTHO05D009384 2.6e-23 112.1 92 58.7
Nn1g03383 Nelumbo nucifera HOM05D007498 ORTHO05D009384 2.6e-23 112.1 89 60.7
Sc21g0001170 Simmondsia chinensis HOM05D007498 ORTHO05D009384 2.6e-23 112.1 95 56.8
COL.COLO4_21864 Corchorus olitorius HOM05D007498 ORTHO05D009384 3.4e-23 111.7 93 58.1
Gohir.D07G193500 Gossypium hirsutum HOM05D007498 ORTHO05D009384 3.4e-23 111.7 91 56.0
Gorai.001G216600 Gossypium raimondii HOM05D007498 ORTHO05D009384 3.4e-23 111.7 91 56.0
TPR.G34497 Trifolium pratense HOM05D007498 ORTHO05D009384 7.6e-23 110.5 94 58.5
Gohir.A07G187000 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.3e-22 109.8 91 54.9
Medtr3g080260 Medicago truncatula HOM05D007498 ORTHO05D009384 1.3e-22 109.8 91 60.4
PGR042G1731 Punica granatum HOM05D007498 ORTHO05D009384 3.8e-22 108.2 91 57.1
Nitab4.5_0000019g0370 Nicotiana tabacum HOM05D007498 ORTHO05D009384 8.4e-22 107.1 84 65.5
THA.LOC104815344 Tarenaya hassleriana HOM05D007498 ORTHO05D009384 2.5e-21 105.5 94 56.4
Gohir.A07G083200 Gossypium hirsutum HOM05D007498 ORTHO05D009384 7.2e-21 104.0 91 56.0
MELO3C014431.2 Cucumis melo HOM05D007498 ORTHO05D009384 9.3e-21 103.6 92 57.6
Gorai.001G095600 Gossypium raimondii HOM05D007498 ORTHO05D009384 9.3e-21 103.6 91 56.0
CsaV3_6G037690 Cucumis sativus L. HOM05D007498 ORTHO05D009384 1.2e-20 103.2 92 57.6
A03p44690 Brassica napus HOM05D007498 ORTHO05D009384 1.6e-20 102.8 96 56.2
C03p55520 Brassica napus HOM05D007498 ORTHO05D009384 2.1e-20 102.4 96 57.3
BcaC01g03153 Brassica carinata HOM05D007498 ORTHO05D009384 1.0e-19 100.1 96 56.2
FAN14G0249 Fragaria x ananassa HOM05D007498 ORTHO05D001133 1.0e-19 100.1 81 61.7
PSO541G2474 Papaver somniferum HOM05D007498 ORTHO05D009384 1.0e-19 100.1 89 57.3
Gohir.D07G089300 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.3e-19 99.8 92 54.3
PSO675G1300 Papaver somniferum HOM05D007498 ORTHO05D009384 2.3e-19 99.0 93 54.8
Sp3g24210 Schrenkiella parvula HOM05D007498 ORTHO05D009384 2.3e-19 99.0 96 55.2
AL3G43270 Arabidopsis lyrata HOM05D007498 ORTHO05D009384 3.9e-19 98.2 96 54.2
AT2G05755 Arabidopsis thaliana HOM05D007498 ORTHO05D009384 3.9e-19 98.2 96 56.2
BcaB08g34508 Brassica carinata HOM05D007498 ORTHO05D009384 3.9e-19 98.2 96 54.2
ClCG07G002420 Citrullus lanatus HOM05D007498 ORTHO05D009384 3.9e-19 98.2 93 53.8
Sed0020195 Sechium edule HOM05D007498 ORTHO05D009384 3.9e-19 98.2 92 53.3
Carub.0003s2696 Capsella rubella HOM05D007498 ORTHO05D009384 5.1e-19 97.8 95 51.6
CARHR103340 Cardamine hirsuta HOM05D007498 ORTHO05D009384 1.1e-18 96.7 97 52.6
Aa31LG8G11370 Aethionema arabicum HOM05D007498 ORTHO05D009384 1.5e-18 96.3 96 52.1
Aqoxy1G02941 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 1.5e-18 96.3 89 53.9
BolC3t17828H Brassica oleracea HOM05D000228 ORTHO05D001122 1.3e-17 93.2 109 50.5
BraA03t13603Z Brassica rapa HOM05D007498 ORTHO05D009384 3.7e-17 91.7 109 48.6
Thhalv10002583m.g Eutrema salsugineum HOM05D007498 ORTHO05D009384 3.7e-17 91.7 96 51.0
ATR0059G023 Amborella trichopoda HOM05D007498 ORTHO05D009384 3.1e-16 88.6 89 50.6
Lj1A780G53 Lonicera japonica HOM05D007498 ORTHO05D009384 9.0e-16 87.0 94 45.7
VMungo0540G1885 Vigna mungo HOM05D007498 ORTHO05D009384 5.0e-14 81.3 65 61.5
Ca_16281_v3 Cicer arietinum L. HOM05D007498 ORTHO05D009384 1.2e-12 76.6 64 59.4
SEGI_23048 Sequoiadendron giganteum HOM05D007498 ORTHO05D009384 1.1e-08 63.5 92 37.0
AagrBONN_evm.TU.Sc2ySwM_344.4295 Anthoceros agrestis HOM05D007498 ORTHO05D009384 5.9e-07 57.8 95 35.8
CDE07G0657 Ceratophyllum demersum HOM05D000323 ORTHO05D009384 2.9e-06 55.5 53 58.5


User provided reference genes

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