Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 7.0e-232 807.0 428 100.0
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.3e-97 360.9 443 50.8
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.9e-91 340.5 438 50.0
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 1.0e-89 334.7 425 50.4
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 4.3e-88 329.3 440 48.4
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 4.5e-85 319.3 421 47.7
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 6.4e-84 315.5 470 47.0
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 3.0e-81 306.6 471 45.6
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 3.3e-72 276.6 475 42.5
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 1.6e-66 257.7 465 42.4
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 2.1e-66 257.3 488 42.0
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 6.7e-65 252.3 471 41.4
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 8.7e-65 251.9 470 40.0
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 4.3e-64 249.6 463 41.9
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 7.4e-64 248.8 467 39.8
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 9.7e-64 248.4 463 40.8
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 1.3e-63 248.1 464 42.2
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 1.6e-63 247.7 477 41.5
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 2.2e-63 247.3 478 41.6
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 6.3e-63 245.7 473 40.6
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 1.1e-62 245.0 463 41.9
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 2.4e-62 243.8 482 39.6
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 2.4e-62 243.8 472 41.1
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 4.1e-62 243.0 475 38.7
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 5.3e-62 242.7 475 38.5
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 1.2e-61 241.5 467 39.2
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 1.5e-61 241.1 471 39.7
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 2.6e-61 240.4 468 40.2
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 1.0e-60 238.4 493 39.4
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.0e-60 238.4 462 40.0
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 1.0e-60 238.4 462 40.0
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 2.2e-60 237.3 493 39.6
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 2.2e-60 237.3 461 40.6
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 6.5e-60 235.7 469 39.4
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 6.5e-60 235.7 458 40.2
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 6.5e-60 235.7 458 40.2
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 2.5e-59 233.8 457 40.5
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 2.5e-59 233.8 471 39.9
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 2.5e-59 233.8 454 41.0
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 3.2e-59 233.4 463 40.0
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 3.2e-59 233.4 462 38.7
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 4.2e-59 233.0 472 39.6
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 4.2e-59 233.0 461 38.6
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 4.2e-59 233.0 454 39.9
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 5.5e-59 232.6 472 39.8
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 1.2e-58 231.5 464 39.2
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.2e-58 231.5 472 40.0
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 1.6e-58 231.1 463 39.1
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.6e-58 231.1 468 39.3
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 3.6e-58 229.9 466 39.7
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 7.9e-58 228.8 469 40.3
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 1.0e-57 228.4 467 39.4
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 1.4e-57 228.0 478 38.7
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 1.8e-57 227.6 506 39.3
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 3.0e-57 226.9 444 39.9
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 2.0e-56 224.2 467 39.2
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 2.5e-56 223.8 475 39.8
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 2.5e-56 223.8 454 40.1
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 4.3e-56 223.0 469 38.2
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 5.7e-56 222.6 469 38.6
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 5.7e-56 222.6 466 39.3
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 2.2e-55 220.7 474 39.7
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 2.2e-55 220.7 454 39.9
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 3.7e-55 219.9 475 38.1
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 6.3e-55 219.2 447 38.7
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 6.3e-55 219.2 467 39.6
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 1.1e-54 218.4 475 36.8
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 1.8e-54 217.6 467 38.1
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 3.1e-54 216.9 460 41.3
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 2.6e-53 213.8 432 39.1
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 3.4e-53 213.4 440 40.7
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.7e-52 211.1 452 38.9
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 2.2e-52 210.7 467 38.5
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 9.4e-51 205.3 468 38.0
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 1.2e-50 204.9 453 39.3
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 4.7e-50 203.0 472 36.2
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 2.6e-48 197.2 451 37.3
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 3.3e-48 196.8 456 39.0
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 5.7e-48 196.1 455 36.5
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 9.7e-48 195.3 461 38.6
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 1.3e-47 194.9 442 36.4
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 1.7e-47 194.5 434 36.2
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 3.7e-47 193.4 446 39.0
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 3.7e-47 193.4 449 36.5
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 3.7e-47 193.4 453 37.7
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 3.1e-46 190.3 471 37.4
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 7.0e-46 189.1 463 35.2
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 2.0e-45 187.6 451 34.8
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 3.5e-45 186.8 454 36.3
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 4.5e-45 186.4 457 35.2
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 7.7e-45 185.7 441 37.0
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 2.9e-44 183.7 450 35.3
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 1.5e-43 181.4 466 35.2
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 3.2e-43 180.3 453 35.1
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 2.7e-42 177.2 469 37.5
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 3.6e-42 176.8 457 35.0
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 1.0e-41 175.3 519 33.1
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 1.4e-41 174.9 456 35.5
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 1.8e-41 174.5 450 35.8
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 3.0e-41 173.7 459 34.0
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 6.7e-41 172.6 453 35.5
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 6.7e-41 172.6 453 35.5
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 1.5e-40 171.4 455 34.7
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 2.0e-40 171.0 454 34.6
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 2.0e-40 171.0 445 35.5
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 1.1e-38 165.2 457 34.1
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 1.1e-38 165.2 468 35.0
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 3.1e-38 163.7 451 33.9
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 4.1e-38 163.3 524 35.3
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 5.3e-38 162.9 438 34.9
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 7.0e-38 162.5 463 34.3
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 9.1e-38 162.2 465 35.1
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 3.5e-37 160.2 446 34.1
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 2.2e-36 157.5 465 34.8
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 1.8e-33 147.9 413 34.6
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.4e-30 138.3 155 53.5
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 2.4e-30 137.5 444 31.3
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 1.6e-29 134.8 447 32.2
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 6.5e-28 129.4 285 36.8
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 1.6e-26 124.8 420 30.7
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 4.7e-26 123.2 434 31.8
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 8.8e-25 119.0 115 55.7
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 2.6e-24 117.5 239 38.5
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.3e-23 115.2 331 31.4
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 1.7e-23 114.8 431 29.9
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 6.3e-23 112.8 275 36.4
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 2.8e-18 97.4 417 29.5
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 1.7e-15 88.2 108 50.0
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 1.6e-13 81.6 114 48.2
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 8.6e-12 75.9 243 30.5
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 1.9e-11 74.7 245 32.2
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 2.5e-11 74.3 191 35.6
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 2.0e-08 64.7 112 40.2


User provided reference genes

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