Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 2.5e-146 522.7 398 100.0
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 5.8e-71 272.3 254 58.7
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 6.4e-62 242.3 210 64.3
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 1.2e-60 238.0 222 57.7
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 5.1e-59 232.6 285 49.5
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.9e-58 230.7 277 48.0
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.9e-58 230.7 277 48.0
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 2.5e-58 230.3 250 56.0
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 9.6e-58 228.4 221 57.9
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 2.8e-57 226.9 230 52.6
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 3.7e-57 226.5 247 53.4
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 2.4e-56 223.8 212 57.5
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 5.8e-55 219.2 280 46.8
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 2.2e-54 217.2 249 51.4
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 2.2e-54 217.2 228 53.9
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.1e-53 214.9 247 51.0
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 1.9e-53 214.2 247 51.0
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 7.1e-53 212.2 222 51.8
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 7.1e-53 212.2 253 51.8
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 7.1e-53 212.2 217 51.6
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 1.0e-51 208.4 223 53.4
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 1.0e-51 208.4 217 52.1
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 9.0e-48 195.3 202 55.9
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 9.0e-48 195.3 136 71.3
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 2.2e-46 190.7 197 53.8
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 1.9e-45 187.6 212 51.9
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 7.2e-45 185.7 233 49.4
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 1.6e-44 184.5 217 52.1
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 2.7e-44 183.7 181 53.6
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 2.7e-44 183.7 217 51.6
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 3.5e-44 183.3 252 46.4
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 8.7e-43 178.7 242 45.5
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 1.1e-42 178.3 186 51.6
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 4.3e-42 176.4 153 59.5
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 5.7e-42 176.0 186 51.1
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 7.4e-42 175.6 201 46.8
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 4.8e-41 172.9 246 44.7
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 3.1e-40 170.2 201 46.8
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 3.1e-40 170.2 243 44.9
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 5.3e-40 169.5 220 45.5
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 2.0e-39 167.5 190 51.1
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 7.7e-39 165.6 203 47.8
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 1.3e-38 164.9 211 47.4
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 1.3e-38 164.9 187 46.0
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 3.8e-38 163.3 187 45.5
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 1.1e-37 161.8 186 47.3
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 1.9e-37 161.0 201 43.8
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 1.9e-37 161.0 249 42.2
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 1.9e-37 161.0 221 44.8
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 5.5e-37 159.5 184 49.5
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 4.6e-36 156.4 213 45.1
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 6.1e-36 156.0 209 47.4
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 1.4e-35 154.8 231 45.0
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 8.8e-35 152.1 195 47.2
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 1.1e-34 151.8 174 50.0
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 1.1e-34 151.8 180 49.4
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 2.0e-34 151.0 214 44.9
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 4.3e-34 149.8 248 38.7
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 4.3e-34 149.8 192 47.4
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 1.3e-33 148.3 157 51.6
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 2.8e-33 147.1 194 44.3
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 4.8e-33 146.4 239 36.4
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 6.3e-33 146.0 157 51.6
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 6.3e-33 146.0 157 51.6
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 6.3e-33 146.0 229 40.2
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 8.2e-33 145.6 180 45.6
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 1.8e-32 144.4 177 45.8
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 3.1e-32 143.7 275 36.0
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 4.1e-32 143.3 215 41.9
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 6.9e-32 142.5 181 47.0
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 9.1e-32 142.1 233 42.1
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 3.4e-31 140.2 156 51.3
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 3.4e-31 140.2 176 47.7
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 1.7e-30 137.9 181 48.1
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 4.7e-28 129.8 206 42.2
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 1.4e-27 128.3 160 50.6
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 1.8e-27 127.9 182 44.0
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 6.7e-27 125.9 191 41.9
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 8.8e-27 125.6 185 43.8
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 1.5e-26 124.8 187 41.2
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 4.4e-26 123.2 175 37.1
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 5.7e-26 122.9 191 41.4
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 9.7e-26 122.1 142 47.2
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 8.2e-25 119.0 211 37.9
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 4.1e-24 116.7 174 43.1
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 1.2e-23 115.2 184 43.5
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 6.5e-22 109.4 98 58.2
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 1.4e-19 101.7 190 37.4
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 2.6e-18 97.4 132 44.7
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 6.3e-17 92.8 174 35.1
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 1.4e-16 91.7 160 35.0
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.8e-16 91.3 124 42.7
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 3.1e-16 90.5 124 41.9
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 5.3e-16 89.7 124 41.9
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 5.3e-16 89.7 124 41.9
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 9.1e-16 89.0 188 34.6
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 1.6e-15 88.2 161 41.0
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 2.7e-15 87.4 123 41.5
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 3.2e-13 80.5 155 32.3
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 7.2e-13 79.3 108 38.9
Nn2g14540 Nelumbo nucifera HOM05D007281 ORTHO05D009241 1.7e-09 68.2 75 45.3
Glyma.12G201200 Glycine max HOM05D007281 ORTHO05D009241 2.8e-09 67.4 73 43.8


User provided reference genes

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