Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 5.2e-151 537.7 279 100.0
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 3.4e-110 402.1 278 78.4
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 3.2e-108 395.6 285 75.8
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 5.1e-106 388.3 283 76.0
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.9e-105 386.3 281 75.1
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 3.3e-105 385.6 283 74.2
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 7.4e-105 384.4 283 72.8
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 7.4e-105 384.4 274 76.6
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.6e-104 383.3 283 72.8
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 6.2e-104 381.3 282 74.1
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 1.1e-103 380.6 283 72.4
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 9.0e-103 377.5 274 74.8
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 9.0e-103 377.5 281 73.7
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.7e-101 373.2 281 72.6
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 4.9e-101 371.7 281 72.6
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.2e-100 368.6 286 71.7
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 4.6e-99 365.2 279 71.0
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 7.9e-99 364.4 273 73.3
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 8.7e-98 360.9 285 70.9
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 1.1e-97 360.5 286 70.6
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.3e-97 358.6 285 70.5
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 4.8e-96 355.1 281 70.5
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.1e-96 354.4 280 71.1
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 4.0e-95 352.1 283 70.0
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.3e-95 351.7 280 70.7
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 5.3e-95 351.7 293 68.6
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.2e-94 350.5 283 70.3
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 2.6e-94 349.4 283 68.9
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 2.6e-94 349.4 288 68.1
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 4.5e-94 348.6 266 69.9
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 7.6e-94 347.8 276 68.1
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 3.8e-93 345.5 249 74.7
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 8.4e-93 344.4 245 74.3
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.1e-92 344.0 283 68.9
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.1e-92 344.0 283 68.9
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 2.5e-92 342.8 263 71.5
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.2e-92 342.4 287 67.2
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 3.2e-92 342.4 278 66.9
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 5.5e-92 341.7 273 70.0
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 5.5e-92 341.7 266 69.9
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 9.3e-92 340.9 279 67.0
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.2e-91 340.5 259 71.8
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.6e-91 340.1 272 70.6
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 2.1e-91 339.7 280 67.5
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 2.7e-91 339.3 276 68.8
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 3.5e-91 339.0 273 67.8
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 6.0e-91 338.2 279 67.0
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 1.8e-90 336.7 274 67.2
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.3e-90 336.3 292 64.4
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 3.0e-90 335.9 277 67.9
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 3.0e-90 335.9 243 74.5
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 8.7e-90 334.3 286 65.0
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.5e-89 333.6 274 65.3
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.5e-89 333.6 274 66.8
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.3e-89 332.4 203 83.3
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 5.7e-89 331.6 238 75.2
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 5.7e-89 331.6 278 67.6
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 2.8e-88 329.3 268 69.4
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 4.8e-88 328.6 284 65.1
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 6.3e-88 328.2 270 69.3
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 8.2e-88 327.8 203 82.3
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 8.2e-88 327.8 257 70.8
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.1e-87 327.4 274 66.4
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 1.8e-87 326.6 260 67.7
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 2.4e-87 326.2 264 67.8
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 3.1e-87 325.9 226 73.0
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 4.1e-87 325.5 254 71.3
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 5.3e-87 325.1 237 71.7
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 9.0e-87 324.3 235 72.8
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 1.5e-86 323.6 202 80.7
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 2.6e-86 322.8 280 62.5
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 3.4e-86 322.4 226 76.1
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.4e-86 322.4 235 71.5
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 1.0e-85 320.9 233 74.7
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.0e-85 320.9 215 75.3
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.7e-85 320.1 256 69.1
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 2.2e-85 319.7 226 75.7
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 2.2e-85 319.7 226 75.7
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 2.2e-85 319.7 211 75.4
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 2.9e-85 319.3 238 72.7
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.9e-85 319.3 282 62.1
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 5.0e-85 318.5 236 73.3
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 1.1e-84 317.4 283 62.9
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.4e-84 317.0 245 69.0
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 1.9e-84 316.6 283 63.6
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 2.5e-84 316.2 212 75.5
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.2e-84 315.8 280 61.4
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 3.2e-84 315.8 283 63.3
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 7.2e-84 314.7 232 73.3
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 7.2e-84 314.7 203 77.3
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 1.2e-83 313.9 238 72.7
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 1.2e-83 313.9 262 66.0
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 1.6e-83 313.5 232 73.3
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 2.7e-83 312.8 203 77.8
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 5.1e-82 308.5 288 65.6
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 5.1e-82 308.5 201 77.1
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 5.1e-82 308.5 277 61.7
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 6.7e-82 308.1 228 75.4
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 3.3e-81 305.8 270 61.9
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 4.3e-81 305.4 244 69.3
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 4.3e-81 305.4 215 76.3
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.3e-80 303.9 261 69.0
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.8e-80 302.8 227 69.6
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 3.7e-80 302.4 279 65.2
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 3.7e-80 302.4 194 80.4
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.4e-79 300.4 203 75.4
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 2.0e-78 296.6 232 68.5
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.6e-78 296.2 182 82.4
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 4.5e-78 295.4 251 64.9
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 6.5e-77 291.6 186 80.1
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.2e-75 287.3 280 57.9
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 4.4e-73 278.9 178 77.5
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 2.8e-72 276.2 178 77.5
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.8e-71 273.5 213 65.7
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 2.4e-71 273.1 207 68.1
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 4.1e-71 272.3 201 69.7
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 5.3e-71 271.9 180 77.2
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 3.4e-70 269.2 228 64.0
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 5.9e-70 268.5 200 69.5
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 7.7e-70 268.1 263 57.8
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.3e-69 267.3 209 67.0
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.7e-64 250.4 186 72.0
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 3.7e-64 249.2 185 70.8
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 3.7e-64 249.2 264 59.5
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 3.8e-61 239.2 230 55.2
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 5.0e-61 238.8 278 54.3
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 3.2e-60 236.1 268 51.1
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 4.2e-60 235.7 272 52.6
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 7.2e-60 235.0 171 71.9
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 8.0e-59 231.5 261 49.4
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 2.3e-58 229.9 166 68.7
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 2.3e-58 229.9 166 68.7
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.3e-53 214.2 131 80.9
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 5.5e-52 208.8 193 61.7
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.7e-46 189.9 199 50.8
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 2.3e-45 186.8 111 81.1
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 1.9e-44 183.7 113 79.6
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.4e-41 172.6 189 48.7
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 7.8e-38 161.8 95 84.2
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.3e-36 156.0 88 86.4
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.8e-34 150.6 223 44.8
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.4e-31 141.0 196 46.9
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 3.6e-27 126.3 199 40.2
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 4.7e-27 125.9 142 54.9
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 5.8e-25 119.0 211 34.6
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 9.8e-25 118.2 213 38.0
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.4e-23 114.4 70 75.7
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 9.2e-23 111.7 81 70.4
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.0e-22 110.5 206 35.0
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 1.0e-21 108.2 149 47.7
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 6.4e-16 89.0 202 33.7
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.9e-15 87.4 113 50.4
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 3.2e-15 86.7 67 65.7
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 2.8e-11 73.6 65 55.4
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 3.1e-10 70.1 71 62.0
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 6.8e-10 68.9 154 35.7
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 5.8e-09 65.9 38 81.6
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 1.6e-06 57.8 55 58.2
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 1.6e-06 57.8 55 58.2
C09p34930 Brassica napus HOM05D001108 ORTHO05D005418 4.6e-06 56.2 51 60.8


User provided reference genes

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