Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2996 Acer truncatum HOM05D000748 ORTHO05D000394 4.7e-80 301.2 159 100.0
Cpa.g.sc34.161 Carica papaya HOM05D000748 ORTHO05D000394 6.2e-32 141.4 91 79.1
Manes.12G089370 Manihot esculenta HOM05D000748 ORTHO05D000394 3.1e-31 139.0 91 80.2
QL08p038716 Quercus lobata HOM05D000748 ORTHO05D000394 7.6e-30 134.4 91 76.9
Dinv26417 Davidia involucrata HOM05D000748 ORTHO05D000394 2.2e-29 132.9 91 75.8
Thecc.02G179400 Theobroma cacao HOM05D000748 ORTHO05D000394 4.9e-29 131.7 91 74.7
Dinv23641 Davidia involucrata HOM05D000748 ORTHO05D000394 6.4e-29 131.3 91 75.8
CiPaw.03G177000 Carya illinoinensis HOM05D000748 ORTHO05D000394 1.1e-28 130.6 91 74.7
TAR629G2208 Trochodendron aralioides HOM05D000748 ORTHO05D000394 1.1e-28 130.6 91 73.6
Haze_13159 Corylus avellana HOM05D000748 ORTHO05D000394 1.4e-28 130.2 91 76.9
Phvul.011G114000 Phaseolus vulgaris HOM05D000748 ORTHO05D000394 2.4e-28 129.4 91 72.5
Glyma.12G113100 Glycine max HOM05D000748 ORTHO05D000394 4.1e-28 128.6 91 71.4
Medtr0004s0210 Medicago truncatula HOM05D000748 ORTHO05D000394 7.1e-28 127.9 91 71.4
Potri.013G131700 Populus trichocarpa HOM05D000748 ORTHO05D000394 7.1e-28 127.9 94 69.1
Cfa014614 Carpinus fangiana HOM05D000748 ORTHO05D000394 1.2e-27 127.1 91 73.6
Lj3g0007355 Lotus japonicus HOM05D000748 ORTHO05D000394 1.2e-27 127.1 91 72.5
CANSAT80G2769 Cannabis sativa HOM05D000748 ORTHO05D000394 2.1e-27 126.3 91 71.4
VMungo1127G0579 Vigna mungo HOM05D000748 ORTHO05D000394 1.0e-26 124.0 91 69.2
Duzib106G1717 Durio zibethinus HOM05D000748 ORTHO05D000394 1.7e-26 123.2 91 69.2
Prupe.3G137700 Prunus persica HOM05D000748 ORTHO05D000394 2.3e-26 122.9 91 69.2
MELO3C018737.2 Cucumis melo HOM05D000748 ORTHO05D000394 3.9e-26 122.1 91 68.1
CsaV3_7G004420 Cucumis sativus L. HOM05D000748 ORTHO05D000394 3.9e-26 122.1 91 68.1
arahy.Tifrunner.gnm1.ann1.UQN5NZ Arachis hypogaea HOM05D000748 ORTHO05D000394 1.5e-25 120.2 94 67.0
Lalb_Chr03g0029451 Lupinus albus HOM05D000748 ORTHO05D000394 2.5e-25 119.4 91 67.0
arahy.Tifrunner.gnm1.ann1.BEAG7X Arachis hypogaea HOM05D000748 ORTHO05D000394 4.3e-25 118.6 94 66.0
MD17G1240500 Malus domestica HOM05D000748 ORTHO05D000394 4.3e-25 118.6 92 67.4
ClCG07G002920 Citrullus lanatus HOM05D000748 ORTHO05D000394 5.6e-25 118.2 91 67.0
Gohir.A09G216900 Gossypium hirsutum HOM05D000748 ORTHO05D000394 5.6e-25 118.2 91 70.3
Gohir.D09G219300 Gossypium hirsutum HOM05D000748 ORTHO05D000394 7.3e-25 117.9 91 70.3
Gorai.006G240300 Gossypium raimondii HOM05D000748 ORTHO05D000394 7.3e-25 117.9 91 70.3
Actinidia11035 Actinidia chinensis HOM05D000748 ORTHO05D000394 9.6e-25 117.5 94 64.9
MD09G1247600 Malus domestica HOM05D000748 ORTHO05D000394 9.6e-25 117.5 93 67.7
Sabra19G0110700 Salix brachista HOM05D000748 ORTHO05D000394 9.6e-25 117.5 91 67.0
Sabra19G0112100 Salix brachista HOM05D000748 ORTHO05D000394 9.6e-25 117.5 91 67.0
COL.COLO4_30183 Corchorus olitorius HOM05D000748 ORTHO05D000394 1.2e-24 117.1 91 64.8
Sabra13G0111200 Salix brachista HOM05D000748 ORTHO05D000394 1.2e-24 117.1 91 64.8
TWI36G1695 Tripterygium wilfordii HOM05D000748 ORTHO05D000394 1.2e-24 117.1 91 71.4
Eucgr.K01023 Eucalyptus grandis HOM05D000748 ORTHO05D000394 1.6e-24 116.7 91 67.0
Glyma.06G292900 Glycine max HOM05D000748 ORTHO05D000394 1.6e-24 116.7 91 64.8
Psat7g189720 Pisum sativum HOM05D000748 ORTHO05D000394 3.6e-24 115.5 91 65.9
Potri.019G100300 Populus trichocarpa HOM05D000748 ORTHO05D000394 4.7e-24 115.2 91 68.1
Sc21g0002840 Simmondsia chinensis HOM05D000748 ORTHO05D000394 1.4e-23 113.6 89 67.4
TAR624G1116 Trochodendron aralioides HOM05D000748 ORTHO05D000394 2.4e-23 112.8 91 65.9
Aa31LG5G2920 Aethionema arabicum HOM05D000748 ORTHO05D000394 3.1e-23 112.5 88 69.3
A09p02820 Brassica napus HOM05D000748 ORTHO05D000394 3.4e-22 109.0 92 68.5
BraA09t35923Z Brassica rapa HOM05D000748 ORTHO05D000394 3.4e-22 109.0 92 68.5
BcaB01g01904 Brassica carinata HOM05D000748 ORTHO05D000394 4.4e-22 108.6 88 68.2
CSS0009741 Camellia sinensis var. sinensis HOM05D000748 ORTHO05D000394 4.4e-22 108.6 92 65.2
Carub.0006s3353 Capsella rubella HOM05D000748 ORTHO05D000394 4.4e-22 108.6 88 65.9
Hma1.2p1_0002F.1_g001860 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 4.4e-22 108.6 94 62.8
Hma1.2p1_1201F.1_g266543 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 4.4e-22 108.6 94 62.8
C09p02900 Brassica napus HOM05D000748 ORTHO05D000394 7.6e-22 107.8 92 67.4
BolC9t53215H Brassica oleracea HOM05D000748 ORTHO05D000394 7.6e-22 107.8 92 67.4
Thhalv10029027m.g Eutrema salsugineum HOM05D000748 ORTHO05D000394 7.6e-22 107.8 88 68.2
AL6G49360 Arabidopsis lyrata HOM05D000748 ORTHO05D000394 9.9e-22 107.5 88 68.2
Hma1.2p1_0002F.1_g001870 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 1.3e-21 107.1 91 63.7
Sc12g0003060 Simmondsia chinensis HOM05D000748 ORTHO05D000394 1.7e-21 106.7 91 59.3
GSVIVG01020544001 Vitis vinifera HOM05D000748 ORTHO05D000394 1.7e-21 106.7 91 68.1
Sed0012708 Sechium edule HOM05D000748 ORTHO05D000394 2.2e-21 106.3 91 61.5
Peaxi162Scf00059g01920 Petunia axillaris HOM05D000748 ORTHO05D000394 2.9e-21 105.9 93 63.4
Sp6g03550 Schrenkiella parvula HOM05D000748 ORTHO05D000394 2.9e-21 105.9 88 67.0
Rhsim06G0142200 Rhododendron simsii HOM05D000748 ORTHO05D000394 3.8e-21 105.5 93 58.1
AT4G03540 Arabidopsis thaliana HOM05D000748 ORTHO05D000394 6.4e-21 104.8 88 65.9
CARHR251970 Cardamine hirsuta HOM05D000748 ORTHO05D000394 1.9e-20 103.2 88 64.8
PGR142G2985 Punica granatum HOM05D000748 ORTHO05D000394 3.2e-20 102.4 87 66.7
vmacro12302 Vaccinium macrocarpon HOM05D000748 ORTHO05D000394 7.1e-20 101.3 91 57.1
Duzib235G0591 Durio zibethinus HOM05D000748 ORTHO05D000394 1.2e-19 100.5 91 56.0
TWI63G0527 Tripterygium wilfordii HOM05D000748 ORTHO05D000394 1.6e-19 100.1 86 59.3
COL.COLO4_31477 Corchorus olitorius HOM05D003185 ORTHO05D009915 2.1e-19 99.8 91 56.0
Hma1.2p1_0126F.1_g059420 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 2.1e-19 99.8 83 62.7
Hund21225 Selenicereus undatus HOM05D000748 ORTHO05D000394 2.1e-19 99.8 91 59.3
THA.LOC104815961 Tarenaya hassleriana HOM05D000748 ORTHO05D000394 2.1e-19 99.8 88 59.1
Thecc.06G188200 Theobroma cacao HOM05D000748 ORTHO05D000394 3.5e-19 99.0 91 56.0
Actinidia23687 Actinidia chinensis HOM05D000748 ORTHO05D000394 4.6e-19 98.6 87 58.6
MBI07_g32534_MAGBIO Magnolia biondii HOM05D000748 ORTHO05D000394 4.6e-19 98.6 91 56.0
Actinidia07583 Actinidia chinensis HOM05D000748 ORTHO05D000394 7.8e-19 97.8 87 59.8
Dinv40554 Davidia involucrata HOM05D000748 ORTHO05D000394 2.3e-18 96.3 85 60.0
Glyma.14G196000 Glycine max HOM05D000748 ORTHO05D000394 5.1e-18 95.1 90 54.4
Lj1A1206T66 Lonicera japonica HOM05D000748 ORTHO05D000394 5.1e-18 95.1 89 57.3
PSO210G3608 Papaver somniferum HOM05D000748 ORTHO05D000394 8.7e-18 94.4 123 45.5
Lj4g0017866 Lotus japonicus HOM05D000748 ORTHO05D000394 1.1e-17 94.0 92 58.7
Aa31LG1G21000 Aethionema arabicum HOM05D000748 ORTHO05D000394 1.5e-17 93.6 88 58.0
FAN21G1875 Fragaria x ananassa HOM05D000748 ORTHO05D000394 1.5e-17 93.6 91 51.6
QL05p040228 Quercus lobata HOM05D000748 ORTHO05D000394 1.9e-17 93.2 89 59.6
Gorai.009G169800 Gossypium raimondii HOM05D000748 ORTHO05D000394 2.5e-17 92.8 92 56.5
BcaB02g06910 Brassica carinata HOM05D000748 ORTHO05D000394 3.3e-17 92.4 88 59.1
A10p02200 Brassica napus HOM05D000748 ORTHO05D000394 3.3e-17 92.4 88 59.1
Gohir.A05G161800 Gossypium hirsutum HOM05D000748 ORTHO05D000394 3.3e-17 92.4 91 58.2
Carub.0001s0280 Capsella rubella HOM05D000748 ORTHO05D000394 4.3e-17 92.0 88 59.1
AL1G13190 Arabidopsis lyrata HOM05D000748 ORTHO05D000394 5.6e-17 91.7 88 58.0
AT1G03700 Arabidopsis thaliana HOM05D000748 ORTHO05D000394 5.6e-17 91.7 88 58.0
Prupe.4G046800 Prunus persica HOM05D000748 ORTHO05D000394 5.6e-17 91.7 91 53.8
BraA10t42488Z Brassica rapa HOM05D000748 ORTHO05D000394 7.3e-17 91.3 85 61.2
Thhalv10009824m.g Eutrema salsugineum HOM05D000748 ORTHO05D000394 7.3e-17 91.3 91 57.1
Glyma.07G196300 Glycine max HOM05D000748 ORTHO05D000394 7.3e-17 91.3 91 54.9
Gohir.D05G164600 Gossypium hirsutum HOM05D000748 ORTHO05D000394 7.3e-17 91.3 92 55.4
BolC5t28984H Brassica oleracea HOM05D000748 ORTHO05D000394 9.6e-17 90.9 88 58.0
vmacro15905 Vaccinium macrocarpon HOM05D000748 ORTHO05D000394 9.6e-17 90.9 87 55.2
FAN16G1836 Fragaria x ananassa HOM05D000748 ORTHO05D000394 1.3e-16 90.5 91 50.5
CARHR003030 Cardamine hirsuta HOM05D000748 ORTHO05D000394 1.6e-16 90.1 88 58.0
Rhsim02G0129000 Rhododendron simsii HOM05D000748 ORTHO05D000394 1.6e-16 90.1 87 54.0
Sp1g02580 Schrenkiella parvula HOM05D000748 ORTHO05D000394 1.6e-16 90.1 88 58.0
Aqoxy1G02433 Aquilegia oxysepala HOM05D000748 ORTHO05D000394 2.1e-16 89.7 91 51.6
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 2.1e-16 89.7 83 61.4
FAN11G2697 Fragaria x ananassa HOM05D000748 ORTHO05D000394 4.8e-16 88.6 87 51.7
EL10Ac8g20380 Beta vulgaris HOM05D000748 ORTHO05D000394 6.2e-16 88.2 91 50.5
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 6.2e-16 88.2 83 60.2
MSTRG.15887 Avicennia marina HOM05D000748 ORTHO05D000394 8.1e-16 87.8 93 47.3
MD05G1313000 Malus domestica HOM05D000748 ORTHO05D000394 1.1e-15 87.4 91 50.5
MD10G1295200 Malus domestica HOM05D000748 ORTHO05D000394 1.4e-15 87.0 91 50.5
RcHm_v2.0_Chr5g0008311 Rosa chinensis HOM05D000748 ORTHO05D000394 1.4e-15 87.0 91 49.5
FvH4_3g09260 Fragaria vesca HOM05D000748 ORTHO05D000394 1.8e-15 86.7 91 49.5
Nn1g04081 Nelumbo nucifera HOM05D000748 ORTHO05D000394 1.8e-15 86.7 91 49.5
PSO832G2785 Papaver somniferum HOM05D000748 ORTHO05D000394 3.1e-15 85.9 92 52.2
Peaxi162Scf00530g00117 Petunia axillaris HOM05D000748 ORTHO05D000394 3.1e-15 85.9 94 51.1
DCAR_013008 Daucus carota HOM05D003471 ORTHO05D004079 4.0e-15 85.5 87 52.9
Migut.M01144 Erythranthe guttata HOM05D000748 ORTHO05D000394 4.0e-15 85.5 94 50.0
VMungo0251G0082 Vigna mungo HOM05D000748 ORTHO05D000394 5.3e-15 85.1 91 49.5
Nn1g06561 Nelumbo nucifera HOM05D000748 ORTHO05D000394 6.9e-15 84.7 91 50.5
TPR.G27502 Trifolium pratense HOM05D000748 ORTHO05D000394 9.0e-15 84.3 60 66.7
MBI07_g12790_MAGBIO Magnolia biondii HOM05D000748 ORTHO05D000394 1.2e-14 84.0 72 56.9
SGA_v2.0_scaffold159G37643 Striga asiatica HOM05D000748 ORTHO05D000394 1.2e-14 84.0 93 46.2
AUR62017014 Chenopodium quinoa HOM05D000748 ORTHO05D000394 1.5e-14 83.6 78 52.6
Peaxi162Scf00661g00521 Petunia axillaris HOM05D000748 ORTHO05D000394 2.0e-14 83.2 93 44.1
PGR004G1146 Punica granatum HOM05D000748 ORTHO05D000394 2.6e-14 82.8 94 50.0
Lalb_Chr16g0383731 Lupinus albus HOM05D000748 ORTHO05D000394 3.4e-14 82.4 92 50.0
Manes.16G027200 Manihot esculenta HOM05D000748 ORTHO05D000394 7.6e-14 81.3 87 50.6
Atru.chr10.1886 Acer truncatum HOM05D000748 ORTHO05D000394 1.3e-13 80.5 90 47.8
Phvul.002G234000 Phaseolus vulgaris HOM05D000748 ORTHO05D000394 1.7e-13 80.1 91 50.5
SalBow7G2481 Salvia bowleyana HOM05D000748 ORTHO05D000394 1.7e-13 80.1 95 46.3
Nitab4.5_0003432g0060 Nicotiana tabacum HOM05D000748 ORTHO05D000394 2.9e-13 79.3 93 43.0
Sopen02g023110 Solanum pennellii HOM05D000748 ORTHO05D000394 2.9e-13 79.3 93 44.1
Nitab4.5_0010762g0030 Nicotiana tabacum HOM05D000748 ORTHO05D000394 4.9e-13 78.6 93 41.9
DCAR_028069 Daucus carota HOM05D000748 ORTHO05D000394 6.4e-13 78.2 85 45.9
Migut.H01488 Erythranthe guttata HOM05D000748 ORTHO05D000394 1.1e-12 77.4 93 44.1
HPP92_003877 Vanilla planifolia HOM05D000748 ORTHO05D000394 1.1e-12 77.4 91 46.2
HPP92_003887 Vanilla planifolia HOM05D000748 ORTHO05D000394 1.4e-12 77.0 91 46.2
Cc02_g13330 Coffea canephora HOM05D000748 ORTHO05D000394 1.9e-12 76.6 93 44.1
Hma1.2p1_0785F.1_g217550 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 1.9e-12 76.6 65 55.4
Potri.004G043300 Populus trichocarpa HOM05D000748 ORTHO05D000394 1.9e-12 76.6 87 49.4
PGSC0003DMG400029690 Solanum tuberosum HOM05D000748 ORTHO05D000394 1.9e-12 76.6 93 41.9
Oeu053972.1 Olea europaea HOM05D000748 ORTHO05D000394 4.2e-12 75.5 93 43.0
CiPaw.10G048100 Carya illinoinensis HOM05D000748 ORTHO05D000394 5.4e-12 75.1 87 50.6
SalBow8G0734 Salvia bowleyana HOM05D003185 ORTHO05D009915 5.4e-12 75.1 93 43.0
Potri.011G052100 Populus trichocarpa HOM05D000748 ORTHO05D000394 1.2e-11 73.9 91 45.1
SalBow8G4396 Salvia bowleyana HOM05D003185 ORTHO05D009915 1.2e-11 73.9 93 41.9
Gorai.005G222200 Gossypium raimondii HOM05D000748 ORTHO05D000394 1.6e-11 73.6 63 63.5
AUR62014819 Chenopodium quinoa HOM05D000748 ORTHO05D000394 2.1e-11 73.2 65 52.3
Eucgr.D00625 Eucalyptus grandis HOM05D000748 ORTHO05D000394 2.1e-11 73.2 88 47.7
Gohir.D02G198525 Gossypium hirsutum HOM05D000748 ORTHO05D000394 2.1e-11 73.2 63 63.5
Sabra11G0035800 Salix brachista HOM05D000748 ORTHO05D000394 4.6e-11 72.0 91 44.0
arahy.Tifrunner.gnm1.ann1.KKMV3J Arachis hypogaea HOM05D000748 ORTHO05D000394 2.3e-10 69.7 85 48.2
CANSAT35G1994 Cannabis sativa HOM05D000748 ORTHO05D000394 3.0e-10 69.3 91 37.4
Thecc.09G087200 Theobroma cacao HOM05D000748 ORTHO05D000394 4.3e-09 65.5 87 50.6
Potri.017G088100 Populus trichocarpa HOM05D000748 ORTHO05D000394 3.6e-08 62.4 76 48.7
Lsat_1_v5_gn_7_21240 Lactuca sativa HOM05D000748 ORTHO05D000394 4.8e-08 62.0 96 35.4
TPR.G24161 Trifolium pratense HOM05D000748 ORTHO05D000394 4.8e-08 62.0 40 70.0
HanXRQChr04g0124291 Helianthus annuus HOM05D000748 ORTHO05D000394 8.1e-08 61.2 87 39.1
Sabra17G0077900 Salix brachista HOM05D000748 ORTHO05D000394 1.1e-07 60.8 76 47.4
SEGI_29018 Sequoiadendron giganteum HOM05D000748 ORTHO05D000394 1.8e-07 60.1 65 56.9
Solyc02g078250.4 Solanum lycopersicum HOM05D000748 ORTHO05D000394 3.1e-07 59.3 67 40.3
Os05g0245300 Oryza sativa ssp. japonica HOM05D000748 ORTHO05D000394 5.3e-07 58.5 91 41.8
Thecc.09G279300 Theobroma cacao HOM05D000748 ORTHO05D000394 6.9e-07 58.2 68 51.5
Duzib170G1028 Durio zibethinus HOM05D000748 ORTHO05D000394 9.0e-07 57.8 68 50.0
SEGI_07624 Sequoiadendron giganteum HOM05D000748 ORTHO05D000394 1.2e-06 57.4 65 56.9
ATR0706G150 Amborella trichopoda HOM05D001151 ORTHO05D001504 2.0e-06 56.6 82 45.1
SEGI_07409 Sequoiadendron giganteum HOM05D000748 ORTHO05D000394 2.0e-06 56.6 87 44.8
SEGI_20673 Sequoiadendron giganteum HOM05D000748 ORTHO05D000394 2.0e-06 56.6 87 44.8
ATR0582G016 Amborella trichopoda HOM05D000748 ORTHO05D000394 3.4e-06 55.8 156 31.4
BcaB08g36907 Brassica carinata HOM05D000748 ORTHO05D000394 3.4e-06 55.8 74 45.9
MBI07_g32647_MAGBIO Magnolia biondii HOM05D000748 ORTHO05D000394 9.9e-06 54.3 39 66.7
Nn2g14226 Nelumbo nucifera HOM05D000748 ORTHO05D000394 9.9e-06 54.3 84 47.6
SEGI_29208 Sequoiadendron giganteum HOM05D000748 ORTHO05D000394 9.9e-06 54.3 68 51.5


User provided reference genes

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