Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 1.6e-100 369.4 182 100.0
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 9.7e-90 333.6 222 80.2
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 3.8e-86 321.6 178 88.8
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 1.5e-85 319.7 222 75.2
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 9.7e-82 307.0 220 72.7
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 9.7e-82 307.0 222 71.6
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 2.8e-81 305.4 220 72.3
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 6.3e-81 304.3 222 70.7
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 8.2e-81 303.9 222 70.7
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.4e-80 302.4 222 70.7
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 3.1e-80 302.0 180 80.6
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 3.1e-80 302.0 221 69.7
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 9.1e-80 300.4 218 72.9
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 9.1e-80 300.4 180 80.0
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 2.0e-79 299.3 218 71.1
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 2.7e-79 298.9 219 70.8
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 3.5e-79 298.5 218 72.0
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 3.5e-79 298.5 219 69.9
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 5.9e-79 297.7 219 68.5
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 5.9e-79 297.7 239 65.7
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 1.0e-78 297.0 220 69.5
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.0e-78 297.0 218 70.2
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.0e-78 297.0 218 70.2
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.7e-78 296.2 220 69.5
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 1.7e-78 296.2 219 69.9
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 1.7e-78 296.2 218 69.7
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.9e-78 295.4 212 72.2
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 3.8e-78 295.0 218 69.3
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 5.0e-78 294.7 222 69.4
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 6.5e-78 294.3 218 68.3
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 6.5e-78 294.3 218 68.3
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 6.5e-78 294.3 217 71.9
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 8.5e-78 293.9 219 66.7
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 1.5e-77 293.1 220 67.3
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 1.5e-77 293.1 219 68.0
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 1.5e-77 293.1 219 68.0
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 1.5e-77 293.1 219 68.0
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 1.5e-77 293.1 219 68.0
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 1.5e-77 293.1 222 68.5
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 1.9e-77 292.7 218 67.9
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 3.2e-77 292.0 220 68.2
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 4.2e-77 291.6 218 66.5
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 7.2e-77 290.8 218 66.5
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 7.2e-77 290.8 218 67.4
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 9.4e-77 290.4 222 67.6
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 1.2e-76 290.0 217 69.6
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 1.6e-76 289.7 219 67.6
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 2.1e-76 289.3 222 67.1
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 3.6e-76 288.5 221 67.4
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 6.1e-76 287.7 232 65.1
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 6.1e-76 287.7 221 66.1
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 6.1e-76 287.7 218 67.4
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 1.0e-75 287.0 218 66.5
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 1.0e-75 287.0 220 65.0
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 1.4e-75 286.6 220 66.8
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 2.3e-75 285.8 220 66.8
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 2.3e-75 285.8 222 65.8
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.0e-75 285.4 219 67.1
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 5.2e-75 284.6 218 66.1
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 5.2e-75 284.6 217 67.3
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 6.8e-75 284.3 222 67.1
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 6.8e-75 284.3 222 67.1
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 6.8e-75 284.3 221 65.2
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 1.5e-74 283.1 220 67.3
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 1.5e-74 283.1 218 67.0
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 2.6e-74 282.3 220 65.9
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 2.6e-74 282.3 220 65.9
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 2.6e-74 282.3 217 67.7
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.6e-74 282.3 217 66.8
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 3.4e-74 282.0 217 66.4
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 4.4e-74 281.6 219 65.3
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 4.4e-74 281.6 219 65.3
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 7.5e-74 280.8 218 65.6
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 7.5e-74 280.8 219 64.8
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 9.8e-74 280.4 219 64.8
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.3e-73 280.0 217 65.4
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 1.7e-73 279.6 218 66.1
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.2e-73 279.3 219 66.2
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 2.2e-73 279.3 222 64.4
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 2.8e-73 278.9 219 64.8
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 2.8e-73 278.9 219 63.9
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 3.7e-73 278.5 219 65.3
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.7e-73 278.5 219 65.3
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 3.7e-73 278.5 219 63.9
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 4.8e-73 278.1 219 65.3
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 8.3e-73 277.3 219 64.4
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 1.1e-72 276.9 219 64.4
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 1.8e-72 276.2 217 66.4
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 3.1e-72 275.4 220 66.4
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 4.1e-72 275.0 209 66.5
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 4.1e-72 275.0 220 64.5
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 5.4e-72 274.6 219 65.3
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 7.0e-72 274.2 213 66.7
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 1.2e-71 273.5 219 63.5
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.2e-71 273.5 220 64.1
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 1.6e-71 273.1 227 62.1
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 2.0e-71 272.7 219 64.4
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 2.7e-71 272.3 220 61.4
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 1.0e-70 270.4 220 62.3
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 6.5e-70 267.7 219 63.9
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 8.5e-70 267.3 222 63.5
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 7.2e-69 264.2 222 63.1
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 1.2e-68 263.5 219 63.9
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 3.6e-68 261.9 222 62.6
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 4.4e-66 255.0 219 60.3
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 7.5e-66 254.2 219 58.9
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 9.8e-66 253.8 209 62.7
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 1.7e-65 253.1 216 59.7
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 3.7e-65 251.9 218 62.4
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 1.4e-64 250.0 193 67.9
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 1.2e-63 246.9 236 57.6
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 1.0e-59 233.8 216 56.0
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 9.8e-58 227.3 216 54.6
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 1.8e-56 223.0 216 53.7
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 3.2e-56 222.2 182 62.1
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 8.6e-54 214.2 246 52.8
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 3.4e-50 202.2 203 52.7
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 6.4e-49 198.0 215 48.8
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 1.4e-48 196.8 177 57.6
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 3.5e-47 192.2 118 79.7
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 6.0e-47 191.4 115 79.1
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 3.0e-46 189.1 119 77.3
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 5.2e-43 178.3 179 55.3
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 6.8e-43 177.9 189 53.4
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 6.4e-41 171.4 216 42.1
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.3e-38 162.9 214 45.8
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 4.3e-37 158.7 89 86.5
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 1.5e-34 150.2 158 51.9
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 1.7e-30 136.7 215 38.6
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 5.1e-30 135.2 219 37.0
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.7e-25 120.2 70 81.4
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 8.4e-25 117.9 65 87.7
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 7.1e-24 114.8 65 84.6
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 4.8e-20 102.1 56 87.5
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 2.2e-17 93.2 55 78.2
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 6.7e-14 81.6 52 76.9
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 4.5e-10 68.9 42 69.0
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 1.2e-07 60.8 64 48.4
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 7.9e-07 58.2 244 23.4
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 7.9e-07 58.2 37 73.0


User provided reference genes

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