Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2889 Acer truncatum HOM05D007676 ORTHO05D009456 9.3e-68 260.0 124 100.0
Atru.chr6.2952 Acer truncatum HOM05D007676 ORTHO05D009456 9.3e-68 260.0 124 100.0
Ciclev10017923m.g Citrus clementina HOM05D007676 ORTHO05D009456 6.5e-37 157.5 123 61.0
Carub.0008s0425 Capsella rubella HOM05D007676 ORTHO05D009456 1.3e-29 133.3 121 48.8
BcaC03g16646 Brassica carinata HOM05D007676 ORTHO05D009456 3.2e-28 128.6 121 48.8
A02p28290 Brassica napus HOM05D007676 ORTHO05D009456 3.2e-28 128.6 121 48.8
C02p44830 Brassica napus HOM05D007676 ORTHO05D009456 3.2e-28 128.6 121 48.8
BolC2t10523H Brassica oleracea HOM05D007676 ORTHO05D009456 3.2e-28 128.6 121 48.8
BraA02t07864Z Brassica rapa HOM05D007676 ORTHO05D009456 3.2e-28 128.6 121 48.8
CARHR178940 Cardamine hirsuta HOM05D007676 ORTHO05D009456 3.2e-28 128.6 115 48.7
Sp2g09080 Schrenkiella parvula HOM05D007676 ORTHO05D009456 3.2e-28 128.6 121 47.1
AT5G44265 Arabidopsis thaliana HOM05D007676 ORTHO05D009456 4.2e-28 128.3 117 47.0
TWI23G0504 Tripterygium wilfordii HOM05D007676 ORTHO05D009456 4.2e-28 128.3 116 50.9
AL8G15740 Arabidopsis lyrata HOM05D007676 ORTHO05D009456 9.4e-28 127.1 112 48.2
Aa31LG5G2990 Aethionema arabicum HOM05D007676 ORTHO05D009456 2.1e-27 125.9 117 46.2
Thhalv10003292m.g Eutrema salsugineum HOM05D007676 ORTHO05D009456 2.1e-27 125.9 115 47.0
QL04p080567 Quercus lobata HOM05D007676 ORTHO05D009456 2.6e-25 119.0 116 49.1
Glyma.12G204200 Glycine max HOM05D007676 ORTHO05D009456 2.8e-24 115.5 118 44.1
THA.LOC104801166 Tarenaya hassleriana HOM05D007676 ORTHO05D009456 6.3e-24 114.4 119 41.2
Potri.017G013200 Populus trichocarpa HOM05D007676 ORTHO05D009456 1.1e-23 113.6 91 53.8
Phvul.005G103800 Phaseolus vulgaris HOM05D007676 ORTHO05D009456 1.4e-23 113.2 125 45.6
VMungo1080G1717 Vigna mungo HOM05D007676 ORTHO05D009456 9.1e-23 110.5 95 53.7
Lalb_Chr14g0366911 Lupinus albus HOM05D007676 ORTHO05D009456 1.2e-22 110.2 128 45.3
PGR042G0101 Punica granatum HOM05D007676 ORTHO05D009456 5.9e-22 107.8 89 53.9
Lalb_Chr00c25g0407471 Lupinus albus HOM05D007676 ORTHO05D009456 1.1e-20 103.6 95 49.5
Lalb_Chr14g0366961 Lupinus albus HOM05D007676 ORTHO05D009456 1.5e-20 103.2 94 50.0
Lj3g0021089 Lotus japonicus HOM05D007676 ORTHO05D009456 3.2e-20 102.1 92 50.0
Potri.007G138400 Populus trichocarpa HOM05D007676 ORTHO05D009456 5.5e-20 101.3 89 49.4
Eucgr.A01836 Eucalyptus grandis HOM05D007676 ORTHO05D009456 7.2e-20 100.9 91 51.6
Lalb_Chr00c08g0404761 Lupinus albus HOM05D007676 ORTHO05D009456 1.6e-19 99.8 94 47.9
Sabra07G0111500 Salix brachista HOM05D007676 ORTHO05D009456 1.4e-18 96.7 113 42.5
TPR.G6389 Trifolium pratense HOM05D007676 ORTHO05D009456 3.0e-18 95.5 96 43.8
MD17G1235700 Malus domestica HOM05D007676 ORTHO05D009456 2.0e-17 92.8 124 41.1
Potri.007G138500 Populus trichocarpa HOM05D007676 ORTHO05D009456 1.3e-16 90.1 112 41.1
MD06G1108000 Malus domestica HOM05D007676 ORTHO05D009456 1.7e-16 89.7 121 39.7
FAN12G2565 Fragaria x ananassa HOM05D007676 ORTHO05D009456 4.8e-16 88.2 123 39.8
THA.LOC104804054 Tarenaya hassleriana HOM05D007676 ORTHO05D009456 4.8e-16 88.2 119 36.1
FvH4_4g18380 Fragaria vesca HOM05D007676 ORTHO05D009456 8.3e-16 87.4 123 39.8
Carub.0007s1233 Capsella rubella HOM05D007676 ORTHO05D009456 1.8e-15 86.3 130 34.6
RcHm_v2.0_Chr2g0127571 Rosa chinensis HOM05D007676 ORTHO05D009456 4.1e-15 85.1 92 40.2
Medtr2g090350 Medicago truncatula HOM05D007676 ORTHO05D009456 9.1e-15 84.0 118 39.0
SalBow7G3232 Salvia bowleyana HOM05D007676 ORTHO05D009456 9.1e-15 84.0 89 41.6
SalBow7G3503 Salvia bowleyana HOM05D007676 ORTHO05D009456 9.1e-15 84.0 89 41.6
BolC7t46093H Brassica oleracea HOM05D007676 ORTHO05D009456 2.0e-14 82.8 100 40.0
Prupe.2G079300 Prunus persica HOM05D007676 ORTHO05D009456 2.7e-14 82.4 112 37.5
Migut.M00162 Erythranthe guttata HOM05D007676 ORTHO05D009456 3.5e-14 82.0 91 42.9
Peaxi162Scf00008g00063 Petunia axillaris HOM05D007676 ORTHO05D009456 3.5e-14 82.0 124 37.9
Thecc.02G183500 Theobroma cacao HOM05D007676 ORTHO05D009456 4.5e-14 81.6 113 40.7
Sabra07G0111600 Salix brachista HOM05D007676 ORTHO05D009456 5.9e-14 81.3 112 38.4
C07p56160 Brassica napus HOM05D000223 ORTHO05D000736 7.7e-14 80.9 100 40.0
Prupe.3G134200 Prunus persica HOM05D007676 ORTHO05D009456 7.7e-14 80.9 116 38.8
RcHm_v2.0_Chr2g0127591 Rosa chinensis HOM05D007676 ORTHO05D009456 7.7e-14 80.9 115 36.5
MD06G1108100 Malus domestica HOM05D007676 ORTHO05D009456 1.0e-13 80.5 80 47.5
AT4G28395 Arabidopsis thaliana HOM05D007676 ORTHO05D009456 1.7e-13 79.7 128 35.2
A03p58040 Brassica napus HOM05D000223 ORTHO05D000736 1.7e-13 79.7 100 39.0
BraA03t14868Z Brassica rapa HOM05D007676 ORTHO05D009456 1.7e-13 79.7 100 39.0
Peaxi162Scf00059g00109 Petunia axillaris HOM05D007676 ORTHO05D009456 1.7e-13 79.7 96 41.7
Manes.12G089100 Manihot esculenta HOM05D007676 ORTHO05D009456 2.2e-13 79.3 113 38.1
CARHR236150 Cardamine hirsuta HOM05D007676 ORTHO05D009456 2.9e-13 79.0 128 33.6
Thhalv10026526m.g Eutrema salsugineum HOM05D007676 ORTHO05D009456 3.8e-13 78.6 120 35.0
CARHR236140 Cardamine hirsuta HOM05D007676 ORTHO05D009456 6.5e-13 77.8 130 31.5
Ciclev10018195m.g Citrus clementina HOM05D007676 ORTHO05D009456 6.5e-13 77.8 122 35.2
AL7G24190 Arabidopsis lyrata HOM05D007676 ORTHO05D009456 1.1e-12 77.0 132 33.3
CAN.G209.28 Capsicum annuum HOM05D007676 ORTHO05D009456 1.5e-12 76.6 91 42.9
Potri.002G012300 Populus trichocarpa HOM05D007676 ORTHO05D009456 1.5e-12 76.6 112 33.0
Sp7g26360 Schrenkiella parvula HOM05D007676 ORTHO05D009456 1.9e-12 76.3 119 32.8
FAN05G5516 Fragaria x ananassa HOM05D007676 ORTHO05D009456 2.5e-12 75.9 126 36.5
Sabra02G0009600 Salix brachista HOM05D007676 ORTHO05D009456 4.2e-12 75.1 112 33.0
Gorai.002G020000 Gossypium raimondii HOM05D007676 ORTHO05D009456 9.4e-12 73.9 113 32.7
Manes.13G144000 Manihot esculenta HOM05D007676 ORTHO05D009456 9.4e-12 73.9 91 41.8
Peaxi162Scf00050g00313 Petunia axillaris HOM05D007676 ORTHO05D009456 1.2e-11 73.6 125 36.8
Carub.0007s1234 Capsella rubella HOM05D007676 ORTHO05D009456 1.6e-11 73.2 128 33.6
Aa31LG2G22250 Aethionema arabicum HOM05D007676 ORTHO05D009456 2.7e-11 72.4 94 36.2
FvH4_6g26560 Fragaria vesca HOM05D007676 ORTHO05D009456 2.7e-11 72.4 126 35.7
FAN23G2239 Fragaria x ananassa HOM05D007676 ORTHO05D009456 3.6e-11 72.0 76 39.5
Lalb_Chr00c08g0404751 Lupinus albus HOM05D007676 ORTHO05D009456 3.6e-11 72.0 102 34.3
Lalb_Chr00c13g0404911 Lupinus albus HOM05D007676 ORTHO05D009456 3.6e-11 72.0 102 34.3
Gohir.A01G019100 Gossypium hirsutum HOM05D007676 ORTHO05D009456 4.7e-11 71.6 113 31.9
Solyc10g008205.2 Solanum lycopersicum HOM05D007676 ORTHO05D009456 6.1e-11 71.2 93 33.3
Aa31LG7G7230 Aethionema arabicum HOM05D007676 ORTHO05D009456 1.8e-10 69.7 129 30.2
Lalb_Chr14g0367061 Lupinus albus HOM05D007676 ORTHO05D009456 4.0e-10 68.6 121 34.7
Aa31LG7G7240 Aethionema arabicum HOM05D007676 ORTHO05D009456 8.8e-10 67.4 127 30.7
Eucgr.A01837 Eucalyptus grandis HOM05D007676 ORTHO05D009456 8.8e-10 67.4 118 30.5
MD14G1128300 Malus domestica HOM05D007676 ORTHO05D009456 1.5e-09 66.6 81 45.7
arahy.Tifrunner.gnm1.ann1.SH5L4P Arachis hypogaea HOM05D029628 ORTHO05D009456 2.0e-09 66.2 89 38.2
PGSC0003DMG400032819 Solanum tuberosum HOM05D007676 ORTHO05D009456 4.4e-09 65.1 91 35.2
arahy.Tifrunner.gnm1.ann1.0QPA7A Arachis hypogaea HOM05D029628 ORTHO05D009456 1.3e-08 63.5 89 37.1
arahy.Tifrunner.gnm1.ann1.W0QD2B Arachis hypogaea HOM05D029628 ORTHO05D009456 1.3e-08 63.5 89 37.1
PGSC0003DMG400025539 Solanum tuberosum HOM05D000275 ORTHO05D000181 4.9e-08 61.6 116 30.2
FvH4_4g18390 Fragaria vesca HOM05D007676 ORTHO05D009456 1.1e-07 60.5 90 37.8
FAN07G1701 Fragaria x ananassa HOM05D007676 ORTHO05D009456 1.1e-07 60.5 90 37.8
FAN12G3844 Fragaria x ananassa HOM05D007676 ORTHO05D009456 1.1e-07 60.5 90 37.8
FAN12G3363 Fragaria x ananassa HOM05D007676 ORTHO05D009456 1.4e-07 60.1 90 37.8
CAN.G1361.15 Capsicum annuum HOM05D000275 ORTHO05D000181 2.4e-07 59.3 117 34.2
Os11g0115100 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 2.4e-07 59.3 93 34.4
Os12g0114800 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 2.4e-07 59.3 93 34.4
TAR633G2391 Trochodendron aralioides HOM05D000275 ORTHO05D000181 4.1e-07 58.5 96 35.4
BcaC06g32625 Brassica carinata HOM05D007676 ORTHO05D009456 7.0e-07 57.8 81 34.6
SEGI_03035 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 1.2e-06 57.0 90 32.2
BraA03t10489Z Brassica rapa HOM05D000275 ORTHO05D000181 2.7e-06 55.8 95 36.8
Nitab4.5_0004959g0060 Nicotiana tabacum HOM05D049181 ORTHO05D009456 7.7e-06 54.3 77 35.1
Hund24417 Selenicereus undatus HOM05D000275 ORTHO05D000181 7.7e-06 54.3 93 33.3
TAR623G0763 Trochodendron aralioides HOM05D000275 ORTHO05D000181 7.7e-06 54.3 93 34.4


User provided reference genes

Program Settings