Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 4.8e-176 621.3 371 100.0
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 3.4e-89 332.8 304 70.7
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.5e-84 316.6 234 74.4
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 9.8e-81 304.7 351 53.8
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 3.9e-77 292.7 358 55.9
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 3.9e-77 292.7 353 53.3
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 3.9e-77 292.7 362 52.2
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 1.9e-76 290.4 223 70.4
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 2.8e-75 286.6 240 67.1
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 6.2e-75 285.4 351 52.1
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 2.3e-74 283.5 352 51.4
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 4.0e-74 282.7 343 51.3
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 5.2e-74 282.3 350 57.4
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 3.4e-73 279.6 219 68.9
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 4.4e-73 279.3 212 71.2
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 5.8e-73 278.9 356 50.3
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 7.6e-73 278.5 212 71.2
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.7e-72 277.3 307 54.4
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.2e-72 276.9 350 56.3
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 1.9e-71 273.9 201 72.6
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 9.2e-71 271.6 207 69.1
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 2.7e-70 270.0 221 65.6
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 2.7e-70 270.0 348 56.9
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.0e-69 268.1 207 69.6
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 3.0e-69 266.5 210 69.5
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 3.9e-69 266.2 209 68.4
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 4.3e-68 262.7 202 68.8
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 9.6e-68 261.5 206 67.0
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 1.2e-67 261.2 209 67.5
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 1.6e-67 260.8 222 64.0
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 3.6e-67 259.6 210 69.5
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 4.7e-67 259.2 222 61.7
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 8.1e-67 258.5 217 64.1
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 8.1e-67 258.5 213 67.1
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.1e-66 258.1 220 63.2
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 1.4e-66 257.7 216 64.8
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 2.4e-66 256.9 244 61.5
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 5.2e-66 255.8 215 66.5
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 1.5e-65 254.2 206 67.5
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.0e-65 253.8 212 64.2
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.0e-65 253.8 212 64.2
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 3.4e-65 253.1 222 62.2
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 4.4e-65 252.7 212 63.7
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.3e-64 251.1 217 65.4
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 2.2e-64 250.4 212 62.3
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 3.8e-64 249.6 208 66.3
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 3.8e-64 249.6 213 65.7
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 4.9e-64 249.2 222 60.8
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 4.9e-64 249.2 222 60.8
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 8.4e-64 248.4 217 63.1
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 5.4e-63 245.7 222 61.3
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 7.1e-63 245.4 200 65.0
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.1e-62 243.8 212 63.7
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 2.7e-62 243.4 222 60.4
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 6.0e-62 242.3 225 58.2
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 2.3e-61 240.4 245 54.7
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 4.3e-60 236.1 216 61.6
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 1.3e-59 234.6 204 61.3
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 1.6e-59 234.2 197 60.9
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 1.6e-59 234.2 209 59.3
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 2.8e-59 233.4 230 57.8
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 3.6e-59 233.0 227 56.8
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.1e-58 231.5 196 59.2
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 1.4e-58 231.1 202 58.9
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 2.4e-58 230.3 223 56.5
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 4.0e-58 229.6 227 55.1
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 4.0e-58 229.6 209 59.8
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 6.9e-58 228.8 210 59.0
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 6.9e-58 228.8 219 56.6
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 9.0e-58 228.4 216 59.7
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.2e-57 228.0 332 44.9
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 1.2e-57 228.0 162 71.6
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 1.5e-57 227.6 204 59.3
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 2.0e-57 227.3 207 58.5
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 9.9e-57 224.9 230 55.2
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 2.2e-56 223.8 524 38.5
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.4e-55 221.1 208 55.8
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 1.4e-55 221.1 213 54.0
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 2.4e-55 220.3 223 55.6
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 3.2e-55 219.9 240 52.9
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 2.3e-53 213.8 216 55.1
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.5e-52 211.1 221 53.8
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.5e-52 211.1 221 53.8
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 6.2e-51 205.7 199 54.8
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 2.4e-50 203.8 419 45.3
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 9.0e-50 201.8 188 61.2
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 6.4e-48 195.7 206 56.3
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.1e-47 194.9 228 52.6
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 6.0e-46 189.1 170 59.4
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 2.3e-45 187.2 153 69.3
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.5e-44 184.5 223 52.9
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 1.5e-44 184.5 217 51.2
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 2.8e-43 180.3 210 50.5
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.8e-43 180.3 202 53.0
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 1.4e-42 177.9 132 64.4
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 2.4e-42 177.2 173 54.3
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 2.4e-42 177.2 212 51.9
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 4.0e-42 176.4 213 47.4
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 6.9e-42 175.6 173 54.3
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 6.9e-42 175.6 173 54.3
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 2.0e-41 174.1 173 54.3
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.5e-41 172.9 155 58.7
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 1.3e-40 171.4 203 47.8
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 3.2e-39 166.8 220 47.3
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 6.7e-37 159.1 228 43.0
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 1.9e-36 157.5 149 56.4
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.4e-34 150.6 201 45.8
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.3e-32 144.8 211 47.4
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 2.7e-30 137.1 129 53.5
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 6.1e-30 136.0 212 43.4
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 7.9e-30 135.6 224 38.8
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 1.3e-29 134.8 165 50.3
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 7.4e-28 129.0 91 69.2
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.1e-26 125.2 159 44.0
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 3.1e-26 123.6 119 52.9
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 1.2e-25 121.7 199 42.2
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.5e-25 119.8 218 42.7
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 5.9e-25 119.4 109 56.0
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.2e-22 111.7 82 70.7
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 1.6e-22 111.3 77 71.4
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 2.6e-20 104.0 89 57.3
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 9.7e-20 102.1 167 44.3
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 5.3e-18 96.3 69 66.7
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 2.6e-17 94.0 191 35.6
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.2e-16 90.9 116 44.0
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 6.5e-16 89.4 175 36.0
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 8.5e-16 89.0 191 35.1
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 4.2e-15 86.7 106 45.3
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 1.1e-12 78.6 92 57.6
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 2.6e-12 77.4 191 33.0
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 5.7e-12 76.3 142 37.3
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 9.7e-12 75.5 43 76.7
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 1.8e-10 71.2 68 55.9
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 4.5e-09 66.6 61 50.8
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 5.9e-09 66.2 86 41.9
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 2.2e-08 64.3 84 41.7
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 2.9e-08 63.9 56 58.9
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 5.0e-08 63.2 84 40.5
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 1.9e-07 61.2 84 39.3
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 7.2e-07 59.3 56 51.8
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 2.7e-06 57.4 52 50.0
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 3.6e-06 57.0 110 41.8


User provided reference genes

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