Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 0.0e+00 1631.3 836 100.0
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 0.0e+00 1244.2 868 75.6
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1237.6 865 73.3
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1214.9 816 75.0
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1202.2 867 71.5
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1195.6 865 71.1
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1186.8 868 71.1
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1186.4 868 71.0
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1176.4 867 70.2
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 0.0e+00 1169.5 865 69.4
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1161.7 866 70.6
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 0.0e+00 1161.0 867 69.6
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1149.4 871 69.9
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1144.4 870 68.5
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 0.0e+00 1142.9 834 70.3
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 0.0e+00 1138.3 816 72.7
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 0.0e+00 1137.5 871 66.9
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1134.4 866 68.5
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1132.5 866 67.9
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1131.7 866 68.8
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1131.7 866 68.0
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 0.0e+00 1130.5 866 67.9
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 0.0e+00 1127.1 867 68.2
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1126.7 869 67.8
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 0.0e+00 1125.2 869 67.4
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 0.0e+00 1122.1 866 67.9
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1114.8 866 68.7
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 0.0e+00 1113.6 875 66.9
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 0.0e+00 1111.3 868 68.1
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1104.7 867 66.7
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1104.0 866 66.5
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 0.0e+00 1103.6 866 67.6
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1102.0 868 68.2
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 0.0e+00 1100.5 871 68.2
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1095.1 825 68.6
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 0.0e+00 1092.4 849 68.0
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1091.6 865 67.2
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 0.0e+00 1083.9 866 67.1
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1083.2 865 66.7
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 0.0e+00 1079.3 869 65.9
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 5.7e-312 1073.5 866 65.1
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 5.7e-310 1067.4 874 65.1
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 1.1e-308 1063.1 864 65.5
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 1.1e-308 1063.1 830 67.6
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 3.1e-308 1061.6 868 64.9
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 6.9e-308 1060.4 864 65.2
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 1.5e-307 1059.3 868 64.5
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 5.8e-307 1057.4 872 64.9
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 7.6e-307 1057.0 863 64.5
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 8.4e-306 1053.5 869 64.4
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 1.3e-303 1046.2 816 66.7
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 7.4e-302 1040.4 864 64.6
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 2.8e-301 1038.5 863 64.5
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 4.8e-301 1037.7 863 64.3
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.1e-300 1036.6 864 64.5
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 3.1e-300 1035.0 825 66.3
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 1.5e-299 1032.7 874 63.8
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 2.2e-298 1028.9 836 66.4
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 1.2e-296 1023.1 867 63.8
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 2.3e-295 1018.8 869 62.7
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 1.3e-293 1013.1 804 65.5
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 6.3e-293 1010.7 824 65.7
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 8.2e-293 1010.4 830 64.9
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 6.9e-292 1007.3 869 62.0
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 2.2e-290 1002.3 877 60.3
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 2.2e-290 1002.3 807 65.4
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 1.1e-289 1000.0 821 64.4
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 2.1e-288 995.7 823 63.9
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 3.6e-288 995.0 822 64.6
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 1.8e-287 992.6 823 63.9
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 3.0e-287 991.9 864 62.2
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 5.1e-287 991.1 752 68.8
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 8.8e-287 990.3 874 62.1
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 8.8e-287 990.3 825 64.0
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 1.1e-286 989.9 822 63.7
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 4.4e-286 988.0 823 64.2
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 2.8e-285 985.3 821 63.6
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 5.3e-284 981.1 824 63.8
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 9.1e-284 980.3 826 63.7
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 9.1e-284 980.3 753 69.6
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 7.2e-281 970.7 869 60.5
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 8.0e-280 967.2 824 62.7
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 5.2e-279 964.5 815 63.2
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 3.2e-273 945.3 816 61.3
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 5.0e-266 921.4 781 63.3
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 2.7e-264 915.6 779 62.9
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 4.7e-264 914.8 813 61.0
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 5.0e-250 868.2 820 57.9
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 7.3e-249 864.4 872 54.6
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 8.3e-245 850.9 870 53.8
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 2.1e-240 836.3 691 65.4
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 8.0e-240 834.3 815 55.2
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 1.8e-239 833.2 646 68.4
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 3.1e-239 832.4 867 54.1
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 2.8e-232 809.3 816 53.6
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 1.1e-225 787.3 776 55.9
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 6.2e-224 781.6 812 54.9
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 2.0e-214 750.0 752 53.9
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 6.7e-186 655.2 522 66.1
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.6e-179 634.0 738 49.3
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 2.7e-155 553.5 428 66.1
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 2.8e-131 473.8 799 37.4
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 4.4e-129 466.5 830 38.0
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 3.0e-125 453.8 810 38.0
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 2.0e-113 414.5 322 67.1
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 1.3e-93 348.6 943 30.8
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 3.2e-63 247.7 179 69.3
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 3.8e-32 144.4 150 53.3
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 7.3e-15 87.0 57 73.7
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 1.2e-14 86.3 86 57.0
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 5.2e-13 80.9 57 70.2
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.5e-12 79.3 57 66.7
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 3.4e-12 78.2 508 22.8
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 4.4e-12 77.8 100 48.0
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 6.4e-11 73.9 873 19.5
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 2.3e-08 65.5 101 46.5
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 2.1e-06 58.9 46 60.9
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 4.7e-06 57.8 571 22.2


User provided reference genes

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