Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2743 Acer truncatum HOM05D010448 ORTHO05D012537 1.1e-264 916.0 453 100.0
Ciclev10015844m.g Citrus clementina HOM05D010448 ORTHO05D012537 3.9e-132 475.7 345 66.7
Eucgr.G01906 Eucalyptus grandis HOM05D010448 ORTHO05D012537 4.1e-97 359.4 395 47.8
Potri.001G146000 Populus trichocarpa HOM05D010448 ORTHO05D012537 8.9e-92 341.7 379 44.9
Potri.001G181000 Populus trichocarpa HOM05D010448 ORTHO05D012537 3.5e-88 329.7 379 43.8
Manes.18G108700 Manihot esculenta HOM05D010448 ORTHO05D012537 3.1e-84 316.6 376 44.9
Sabra01G0146000 Salix brachista HOM05D010448 ORTHO05D012537 7.0e-81 305.4 378 41.5
Sabra01G0114700 Salix brachista HOM05D010448 ORTHO05D012537 1.3e-79 301.2 379 40.4
Lalb_Chr18g0053761 Lupinus albus HOM05D010448 ORTHO05D012537 1.3e-74 284.6 374 40.1
Lj6g0025570 Lotus japonicus HOM05D010448 ORTHO05D012537 8.1e-69 265.4 346 41.0
Glyma.18G044800 Glycine max HOM05D010448 ORTHO05D012537 6.8e-68 262.3 378 37.6
VMungo0540G1047 Vigna mungo HOM05D010448 ORTHO05D012537 1.5e-67 261.2 349 39.8
Phvul.006G086200 Phaseolus vulgaris HOM05D010448 ORTHO05D012537 4.4e-67 259.6 353 39.4
Glyma.11G210008 Glycine max HOM05D010448 ORTHO05D012537 9.9e-67 258.5 351 39.0
arahy.Tifrunner.gnm1.ann1.4R5R47 Arachis hypogaea HOM05D010448 ORTHO05D012537 9.6e-62 241.9 360 38.3
Medtr3g064460 Medicago truncatula HOM05D010448 ORTHO05D012537 9.6e-62 241.9 385 36.6
Psat5g142640 Pisum sativum HOM05D010448 ORTHO05D012537 1.4e-60 238.0 347 38.3
TPR.G18483 Trifolium pratense HOM05D010448 ORTHO05D012537 1.1e-57 228.4 366 36.3
Atru.chr13.2066 Acer truncatum HOM05D010448 ORTHO05D012537 3.0e-23 114.0 124 44.4
COL.COLO4_26298 Corchorus olitorius HOM05D015450 ORTHO05D017757 1.8e-15 88.2 266 25.9
MBI07_g31506_MAGBIO Magnolia biondii HOM05D010448 ORTHO05D012537 1.5e-14 85.1 348 24.4
Actinidia35149 Actinidia chinensis HOM05D002420 ORTHO05D002422 5.3e-12 76.6 331 26.3
Ciclev10006867m.g Citrus clementina HOM05D000664 ORTHO05D000491 1.2e-11 75.5 321 25.9
Dinv23189 Davidia involucrata HOM05D000571 ORTHO05D000435 1.2e-11 75.5 322 27.3
Nitab4.5_0000032g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 7.7e-11 72.8 339 24.5
TAR371G0827 Trochodendron aralioides HOM05D002420 ORTHO05D002422 2.2e-10 71.2 271 24.4
MBI11_g33761_MAGBIO Magnolia biondii HOM05D010448 ORTHO05D012537 1.1e-09 68.9 129 32.6
vmacro20419 Vaccinium macrocarpon HOM05D002420 ORTHO05D002422 2.5e-09 67.8 329 23.4
COL.COLO4_34020 Corchorus olitorius HOM05D001729 ORTHO05D001155 4.2e-09 67.0 304 26.3
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 5.5e-09 66.6 348 23.0
Atru.chr9.129 Acer truncatum HOM05D002420 ORTHO05D002422 9.4e-09 65.9 210 23.3
CSS0028398 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 1.2e-08 65.5 345 22.6
CSS0031967 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 1.2e-08 65.5 345 22.6
Lj4g0009025 Lotus japonicus HOM05D002420 ORTHO05D002422 1.6e-08 65.1 151 27.2
MD16G1240100 Malus domestica HOM05D000664 ORTHO05D000491 3.6e-08 63.9 348 23.3
Aqoxy3G01316 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 6.1e-08 63.2 197 25.9
MD13G1235200 Malus domestica HOM05D000664 ORTHO05D000491 1.0e-07 62.4 199 25.1
Lalb_Chr16g0386521 Lupinus albus HOM05D002420 ORTHO05D002422 1.4e-07 62.0 222 23.0
Nitab4.5_0004790g0040 Nicotiana tabacum HOM05D000664 ORTHO05D000491 6.7e-07 59.7 276 22.8
Aqoxy4G01072 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 2.0e-06 58.2 209 25.4
Cpa.g.sc42.22 Carica papaya HOM05D002420 ORTHO05D002422 2.0e-06 58.2 319 22.3
Dinv35017 Davidia involucrata HOM05D008898 ORTHO05D001155 2.0e-06 58.2 295 26.4
Manes.05G199200 Manihot esculenta HOM05D002420 ORTHO05D002422 2.0e-06 58.2 224 22.8
RcHm_v2.0_Chr4g0398061 Rosa chinensis HOM05D000664 ORTHO05D000491 2.6e-06 57.8 310 25.8
Prupe.1G066300 Prunus persica HOM05D000664 ORTHO05D000491 5.7e-06 56.6 202 23.8
Nn8g41006 Nelumbo nucifera HOM05D000664 ORTHO05D000491 9.7e-06 55.8 217 28.1


User provided reference genes

Program Settings