Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 7.2e-84 314.3 214 100.0
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.8e-43 179.5 222 58.6
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.0e-42 177.6 216 51.4
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.4e-42 177.2 215 50.7
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.5e-41 173.7 217 57.1
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.7e-41 171.8 217 57.6
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 7.5e-41 171.4 221 56.1
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.1e-39 167.5 216 50.0
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.4e-39 166.4 217 48.8
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 3.2e-39 166.0 214 49.5
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 4.1e-39 165.6 218 50.9
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 5.4e-39 165.2 232 53.9
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 5.4e-39 165.2 215 49.8
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 2.7e-38 162.9 217 48.4
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 2.7e-38 162.9 215 48.4
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 2.7e-38 162.9 218 50.0
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 1.7e-37 160.2 232 47.4
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 2.3e-37 159.8 216 49.1
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 2.3e-37 159.8 213 49.8
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.1e-36 157.5 218 49.5
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 3.3e-36 156.0 211 48.3
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 9.5e-36 154.5 224 55.4
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 2.8e-35 152.9 215 48.8
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.8e-35 152.9 202 48.5
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 4.7e-35 152.1 216 44.4
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 4.0e-34 149.1 230 47.0
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.2e-33 147.5 200 47.0
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.5e-33 147.1 235 47.2
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.5e-33 147.1 213 51.6
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.0e-33 146.7 215 44.7
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 2.0e-33 146.7 222 46.8
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 2.6e-33 146.4 215 44.7
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.4e-33 146.0 219 42.5
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.3e-32 144.1 209 46.4
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.7e-32 143.7 215 43.7
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.7e-32 143.7 219 42.0
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.2e-32 143.3 219 42.5
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 2.2e-32 143.3 224 49.1
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 2.9e-32 142.9 213 57.7
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 3.7e-32 142.5 217 44.7
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.7e-32 142.5 219 42.0
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.1e-31 141.0 216 40.7
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 1.4e-31 140.6 219 42.0
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 4.1e-31 139.0 219 42.5
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 5.4e-31 138.7 213 41.8
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 7.0e-31 138.3 221 45.2
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 7.0e-31 138.3 216 45.4
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.2e-30 137.5 214 44.4
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.0e-30 136.7 215 42.8
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.8e-30 134.8 217 40.6
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 2.3e-29 133.3 220 41.8
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 6.6e-29 131.7 215 40.0
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.1e-28 131.0 214 43.5
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.9e-28 130.2 222 40.1
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 2.5e-28 129.8 218 43.1
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 4.3e-28 129.0 215 42.8
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 5.6e-28 128.6 209 43.5
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 7.3e-28 128.3 239 43.1
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 7.3e-28 128.3 212 43.4
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 9.5e-28 127.9 246 39.0
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 6.2e-27 125.2 219 39.7
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.1e-27 124.8 215 42.8
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 8.1e-27 124.8 203 43.8
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.4e-26 124.0 211 51.7
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.8e-26 123.6 217 38.7
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-26 123.6 214 38.8
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.8e-26 123.6 220 36.8
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.1e-26 122.9 208 50.0
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 5.2e-26 122.1 220 40.9
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 6.8e-26 121.7 211 40.8
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.2e-25 120.9 216 42.1
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.2e-25 120.9 209 48.3
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 2.0e-25 120.2 214 43.5
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.4e-25 119.4 219 38.8
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 4.4e-25 119.0 208 46.6
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.4e-25 119.0 218 38.1
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 5.8e-25 118.6 213 37.1
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 5.8e-25 118.6 216 43.5
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.3e-24 117.5 215 37.7
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-24 117.1 218 38.5
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.7e-24 117.1 218 38.5
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.7e-24 117.1 225 36.9
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.2e-24 116.7 203 50.2
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 2.9e-24 116.3 219 34.7
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 2.9e-24 116.3 213 36.6
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.9e-24 116.3 221 35.3
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 4.9e-24 115.5 215 36.7
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.9e-24 115.5 218 38.1
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.9e-24 115.5 219 44.3
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.9e-24 115.5 219 44.3
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.9e-24 115.5 219 44.3
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 6.4e-24 115.2 215 40.0
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 8.3e-24 114.8 221 48.9
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.1e-23 114.4 218 36.2
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 1.4e-23 114.0 213 37.1
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.4e-23 114.0 219 37.0
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.9e-23 113.6 215 36.3
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.9e-23 113.6 211 41.2
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.9e-23 113.6 215 35.8
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.9e-23 113.6 215 36.3
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.9e-23 113.6 215 36.3
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 2.4e-23 113.2 215 35.8
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 3.2e-23 112.8 215 47.0
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 3.2e-23 112.8 207 44.9
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 4.1e-23 112.5 225 40.0
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 4.1e-23 112.5 217 36.9
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 5.4e-23 112.1 226 36.3
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 5.4e-23 112.1 211 47.4
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 5.4e-23 112.1 211 47.4
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 5.4e-23 112.1 211 47.4
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 5.4e-23 112.1 219 36.1
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 5.4e-23 112.1 224 37.5
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 5.4e-23 112.1 218 41.3
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 7.1e-23 111.7 213 37.1
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 7.1e-23 111.7 208 45.2
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 9.2e-23 111.3 213 39.9
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.6e-22 110.5 224 42.4
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 4.6e-22 109.0 222 39.6
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 7.8e-22 108.2 229 37.6
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.7e-21 107.1 225 36.9
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 2.3e-21 106.7 218 42.7
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 3.9e-21 105.9 224 36.6
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 5.1e-21 105.5 200 42.0
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 5.1e-21 105.5 218 43.1
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 5.1e-21 105.5 213 41.3
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 8.6e-21 104.8 223 37.7
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.1e-20 104.4 206 44.2
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.5e-20 104.0 224 41.5
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 2.5e-20 103.2 207 36.7
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 4.3e-20 102.4 227 36.1
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.1e-19 100.1 207 36.2
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.6e-19 99.4 205 38.0
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 8.1e-19 98.2 211 37.4
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 3.1e-18 96.3 192 37.5
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 3.1e-18 96.3 74 64.9
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 5.2e-18 95.5 192 41.7
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 5.2e-18 95.5 221 44.8
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 8.9e-18 94.7 211 41.2
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-17 94.4 190 38.4
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.2e-17 94.4 190 38.4
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.0e-17 93.6 215 37.2
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.6e-17 93.2 190 39.5
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 5.8e-17 92.0 184 40.2
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 5.8e-17 92.0 202 39.6
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 5.8e-17 92.0 202 39.6
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 7.6e-17 91.7 192 40.6
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.6e-17 91.7 199 41.2
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 1.3e-16 90.9 183 36.6
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.1e-15 87.8 220 31.4
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.4e-15 87.4 165 43.6
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 4.1e-15 85.9 223 41.7
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 7.1e-15 85.1 206 37.4
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 2.1e-14 83.6 245 31.0
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 4.6e-14 82.4 216 43.5
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 6.0e-14 82.0 68 66.2
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 5.1e-13 79.0 70 62.9
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 1.5e-12 77.4 75 58.7
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.9e-12 77.0 220 28.6
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.9e-12 77.0 71 63.4
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 2.5e-12 76.6 222 31.1
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.3e-12 75.9 214 28.5
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 9.6e-12 74.7 193 36.3
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 2.1e-11 73.6 75 56.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.4e-10 70.1 156 46.8
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.4e-10 70.1 68 51.5
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 3.4e-09 66.2 62 58.1
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 7.6e-09 65.1 195 31.3
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 1.7e-08 63.9 213 32.4
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.4e-07 60.1 192 30.7
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.4e-07 60.1 195 32.3
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 3.2e-07 59.7 43 67.4
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 7.1e-07 58.5 203 30.5


User provided reference genes

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