Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 6.8e-45 183.7 99 100.0
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 9.2e-26 120.2 98 70.4
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 2.3e-24 115.5 97 70.1
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 2.3e-24 115.5 97 70.1
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 3.9e-24 114.8 97 70.1
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 1.5e-23 112.8 99 68.7
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 4.3e-23 111.3 99 64.6
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 4.3e-23 111.3 98 66.3
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 2.1e-22 109.0 99 62.6
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 2.8e-22 108.6 97 62.9
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 8.0e-22 107.1 98 66.3
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 1.1e-21 106.7 98 63.3
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 1.8e-21 105.9 99 59.6
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 1.8e-21 105.9 92 65.2
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 3.1e-21 105.1 94 67.0
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 4.0e-21 104.8 97 64.9
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 4.0e-21 104.8 99 60.6
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 5.2e-21 104.4 93 68.8
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 6.8e-21 104.0 100 63.0
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 8.9e-21 103.6 100 61.0
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 1.5e-20 102.8 99 66.7
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 2.0e-20 102.4 93 64.5
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 2.6e-20 102.1 97 60.8
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 3.4e-20 101.7 98 61.2
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 7.5e-20 100.5 99 64.6
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.3e-19 99.8 99 59.6
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 1.7e-19 99.4 100 61.0
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 2.2e-19 99.0 99 55.6
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 2.2e-19 99.0 99 58.6
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 3.7e-19 98.2 97 61.9
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 4.9e-19 97.8 99 57.6
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 6.4e-19 97.4 99 57.6
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.1e-18 96.7 93 61.3
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 1.1e-18 96.7 98 62.2
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 1.4e-18 96.3 92 63.0
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 1.4e-18 96.3 100 59.0
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 1.9e-18 95.9 100 57.0
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 3.2e-18 95.1 99 56.6
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 4.1e-18 94.7 93 62.4
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 4.1e-18 94.7 98 60.2
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 5.4e-18 94.4 99 59.6
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 7.0e-18 94.0 99 57.6
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 1.6e-17 92.8 102 60.8
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 2.0e-17 92.4 101 58.4
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 2.0e-17 92.4 99 54.5
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 2.7e-17 92.0 93 63.4
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.7e-17 92.0 99 55.6
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 2.7e-17 92.0 99 55.6
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 4.6e-17 91.3 99 53.5
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 6.0e-17 90.9 87 60.9
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 7.8e-17 90.5 103 52.4
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 1.3e-16 89.7 99 53.5
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 1.7e-16 89.4 92 57.6
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 6.6e-16 87.4 92 57.6
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 1.1e-15 86.7 99 56.6
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 2.5e-15 85.5 96 59.4
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 4.3e-15 84.7 96 59.4
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 9.5e-15 83.6 99 52.5
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.6e-14 82.8 97 52.6
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 1.6e-14 82.8 97 53.6
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 2.1e-14 82.4 93 60.2
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 2.1e-14 82.4 97 53.6
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 2.8e-14 82.0 99 53.5
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 4.7e-14 81.3 97 51.5
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 6.2e-14 80.9 97 55.7
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 8.1e-14 80.5 94 57.4
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 1.1e-13 80.1 99 52.5
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 1.8e-13 79.3 94 55.3
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 2.3e-13 79.0 93 58.1
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 2.3e-13 79.0 102 51.0
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.2e-12 76.6 93 48.4
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 1.7e-11 72.8 101 51.5
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 2.2e-11 72.4 98 48.0
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 2.9e-11 72.0 96 52.1
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 4.9e-11 71.2 102 50.0
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 8.3e-11 70.5 98 48.0
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 1.1e-10 70.1 102 50.0
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 1.1e-10 70.1 101 50.5
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 1.9e-10 69.3 97 51.5
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 3.2e-10 68.6 99 49.5
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 4.1e-10 68.2 93 50.5
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 4.1e-10 68.2 102 49.0
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 5.4e-10 67.8 95 48.4
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 7.1e-10 67.4 102 48.0
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 7.1e-10 67.4 93 49.5
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 9.2e-10 67.0 98 49.0
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 1.2e-09 66.6 98 50.0
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 3.5e-09 65.1 99 42.4
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.0e-08 63.5 100 46.0
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 5.1e-08 61.2 62 58.1
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 2.8e-06 55.5 105 46.7


User provided reference genes

Program Settings