Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 3.7e-124 448.4 251 100.0
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 9.9e-93 344.0 284 63.7
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 5.1e-89 331.6 254 69.7
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 5.1e-89 331.6 255 70.2
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 2.5e-88 329.3 253 66.8
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 2.5e-88 329.3 252 71.0
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.3e-88 328.9 255 70.6
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.6e-88 328.2 252 66.7
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.3e-87 327.0 256 70.7
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.6e-87 326.6 253 71.1
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 4.8e-87 325.1 255 65.9
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.8e-86 323.2 253 70.4
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 3.1e-86 322.4 253 70.8
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.1e-86 322.4 253 70.4
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 9.0e-86 320.9 257 70.0
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 1.2e-85 320.5 272 62.1
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.2e-85 320.5 251 69.7
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.5e-85 320.1 251 69.7
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 3.4e-85 318.9 251 62.5
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 4.5e-85 318.5 253 70.0
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 3.8e-84 315.5 251 64.5
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 4.9e-84 315.1 253 64.8
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.9e-83 313.2 251 68.5
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 5.4e-83 311.6 254 65.0
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 2.1e-82 309.7 251 63.3
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 3.5e-82 308.9 251 68.5
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.8e-81 306.6 252 62.7
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.3e-81 306.2 256 61.7
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.7e-81 304.7 256 61.3
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 7.4e-80 301.2 240 64.6
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 2.1e-79 299.7 253 63.2
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 2.1e-79 299.7 252 61.9
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 3.7e-79 298.9 251 68.1
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 6.2e-79 298.1 247 62.8
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 8.1e-79 297.7 251 63.3
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.0e-78 295.4 222 66.7
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 9.0e-78 294.3 249 62.7
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.0e-77 293.1 254 64.2
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 2.6e-77 292.7 259 61.0
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.6e-77 292.7 231 65.4
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.6e-77 292.7 231 65.4
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 3.4e-77 292.4 242 63.6
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 4.5e-77 292.0 258 65.9
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 1.7e-76 290.0 244 62.7
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 6.5e-76 288.1 239 61.9
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 6.5e-76 288.1 244 61.5
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 8.4e-76 287.7 255 58.4
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 1.4e-75 287.0 245 62.0
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.9e-75 286.6 252 59.9
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 3.2e-75 285.8 232 64.7
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 7.1e-75 284.6 243 62.6
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 7.1e-75 284.6 255 60.8
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 1.2e-74 283.9 225 64.0
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.1e-74 283.1 249 60.6
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 4.6e-74 282.0 225 66.7
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 1.3e-73 280.4 241 58.1
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.9e-73 278.9 246 59.3
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 8.7e-73 277.7 234 63.2
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 1.1e-72 277.3 255 57.6
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.1e-72 277.3 249 59.8
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 1.9e-72 276.6 243 60.9
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 1.9e-72 276.6 255 58.8
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 2.5e-72 276.2 241 58.1
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 4.3e-72 275.4 255 58.8
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 5.7e-72 275.0 255 58.8
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 5.7e-72 275.0 224 62.5
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.3e-71 273.9 252 58.3
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.6e-71 273.5 246 58.9
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 1.6e-71 273.5 256 56.2
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 6.2e-71 271.6 237 60.3
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 2.4e-70 269.6 245 57.6
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 3.1e-70 269.2 210 65.2
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 3.1e-70 269.2 253 58.9
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 4.1e-70 268.9 253 58.9
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 5.3e-70 268.5 256 58.2
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 2.0e-69 266.5 256 57.8
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 3.4e-69 265.8 282 53.5
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 5.8e-69 265.0 246 59.8
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.7e-68 263.5 273 53.5
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 2.9e-68 262.7 255 58.0
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 3.8e-68 262.3 273 53.1
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 3.8e-68 262.3 254 57.5
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 5.0e-68 261.9 229 68.1
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 1.4e-67 260.4 254 56.3
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.4e-67 260.4 253 56.9
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 1.9e-67 260.0 252 58.3
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 2.5e-67 259.6 269 55.4
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 2.5e-67 259.6 245 60.8
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 2.5e-67 259.6 282 52.1
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 3.2e-67 259.2 254 55.9
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 9.3e-67 257.7 254 63.8
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 4.6e-66 255.4 204 69.1
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 7.9e-66 254.6 253 62.8
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 1.0e-65 254.2 256 56.6
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 1.3e-65 253.8 234 59.8
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 5.1e-65 251.9 253 58.5
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 6.7e-65 251.5 256 56.6
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 8.7e-65 251.1 235 58.7
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 1.1e-64 250.8 236 57.2
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 3.3e-64 249.2 256 55.5
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 9.7e-64 247.7 229 58.5
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 1.6e-63 246.9 257 56.4
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 2.2e-63 246.5 261 53.6
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 2.2e-63 246.5 261 53.6
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 2.2e-63 246.5 246 52.8
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 3.7e-63 245.7 242 52.9
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 6.3e-63 245.0 188 69.1
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 8.2e-63 244.6 164 74.4
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 3.1e-62 242.7 228 54.8
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 4.1e-62 242.3 261 52.5
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 4.1e-62 242.3 248 55.6
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 5.3e-62 241.9 225 56.4
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 2.0e-61 240.0 259 51.7
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 2.0e-61 240.0 259 51.7
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 4.5e-61 238.8 193 63.2
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 2.2e-60 236.5 207 70.0
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 7.2e-59 231.5 271 51.3
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 1.1e-56 224.2 167 67.7
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.5e-56 223.0 235 51.5
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 1.4e-54 217.2 230 53.0
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 7.7e-53 211.5 226 58.0
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.9e-52 209.5 222 59.9
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 2.7e-50 203.0 189 56.1
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 5.1e-49 198.7 179 58.1
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 1.1e-48 197.6 169 73.4
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 1.5e-48 197.2 169 61.5
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 2.0e-45 186.8 229 45.9
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 1.7e-44 183.7 234 47.0
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 7.2e-43 178.3 236 45.3
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 9.4e-43 177.9 181 53.0
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 6.1e-42 175.3 207 48.8
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 3.0e-41 172.9 134 64.2
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.7e-36 157.1 213 42.7
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.9e-36 156.4 202 49.5
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 4.0e-33 146.0 178 44.4
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 6.8e-33 145.2 113 70.8
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 3.1e-30 136.3 228 37.3
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.5e-28 128.3 140 54.3
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.1e-27 127.9 149 50.3
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.9e-27 127.1 82 70.7
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.2e-27 126.3 140 54.3
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 7.2e-27 125.2 139 54.0
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.0e-24 117.1 115 49.6
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.8e-22 110.5 88 68.2
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 2.8e-18 96.7 83 55.4
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 2.8e-18 96.7 83 55.4
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 2.8e-18 96.7 83 55.4
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 2.0e-16 90.5 154 44.8
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.4e-14 84.3 140 37.9
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 9.2e-14 81.6 194 31.4
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 1.6e-13 80.9 102 45.1
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 2.8e-10 70.1 149 32.9
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 1.8e-09 67.4 68 51.5
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.2e-08 64.7 61 60.7
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 5.8e-08 62.4 132 35.6
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 7.5e-08 62.0 141 35.5
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 9.8e-08 61.6 142 34.5
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.3e-07 61.2 77 49.4
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 1.7e-07 60.8 151 29.8
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 2.9e-07 60.1 144 30.6
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 2.9e-07 60.1 118 35.6
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 6.4e-07 58.9 154 31.2
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 6.4e-07 58.9 143 30.1
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 8.3e-07 58.5 148 32.4
SMO361G0571 Selaginella moellendorffii HOM05D018282 ORTHO05D005223 1.1e-06 58.2 47 61.7
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 2.4e-06 57.0 145 31.7
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 3.2e-06 56.6 178 28.7
PSO782G2536 Papaver somniferum HOM05D004631 ORTHO05D005223 4.1e-06 56.2 84 41.7
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 5.4e-06 55.8 125 34.4
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 5.4e-06 55.8 142 31.7
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 5.4e-06 55.8 142 33.1
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 7.0e-06 55.5 118 33.1
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 9.2e-06 55.1 110 34.5
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 9.2e-06 55.1 145 31.0
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 9.2e-06 55.1 157 29.9
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 9.2e-06 55.1 157 29.9


User provided reference genes

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