Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 2197.9 1111 100.0
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1681.8 1116 76.3
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1636.3 1116 73.7
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1606.3 1122 73.3
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1594.3 1116 72.3
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1593.9 1117 72.3
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1591.2 1128 72.3
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1582.0 1129 71.8
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1567.0 1117 71.8
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1559.3 1183 68.6
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1541.6 1117 70.7
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1525.8 1126 70.2
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1524.2 1117 69.7
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1520.0 1124 69.8
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1519.6 1118 69.1
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1519.6 1117 69.7
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1496.5 1117 68.1
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1496.1 1113 69.6
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1495.3 1113 69.6
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1492.6 1127 68.2
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1488.4 1111 68.4
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1486.9 1117 68.3
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1482.6 1118 68.2
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1482.2 1119 68.2
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1469.1 1068 71.6
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1461.8 1117 66.5
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1458.0 1117 67.0
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1455.3 1119 67.1
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1455.3 1121 66.6
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1453.7 1118 66.7
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1452.2 1117 66.7
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1443.7 1117 66.4
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1437.9 1150 64.7
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1435.2 1117 65.7
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1434.1 1119 67.3
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1432.5 1117 66.2
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1426.4 1118 65.7
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1423.7 1157 64.6
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1421.4 1119 66.0
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1421.0 1117 64.7
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1419.1 1118 65.4
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1417.1 1123 64.3
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1417.1 1123 64.3
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1417.1 1184 62.8
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1416.4 1118 65.2
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1412.1 1117 65.3
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1409.8 1114 65.2
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1409.4 1117 65.2
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1406.3 1123 64.9
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1404.4 1139 64.0
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1399.0 953 74.1
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1394.4 1117 64.9
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1393.3 915 75.6
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1393.3 1133 64.0
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1386.7 1118 63.8
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1382.9 1116 63.5
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1379.0 1136 65.1
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1377.5 1096 65.0
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1377.1 1096 64.9
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1376.3 957 73.8
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1374.0 1165 63.4
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1371.3 1117 63.1
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1367.8 1121 63.2
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1366.3 1120 63.3
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1360.5 1118 63.1
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1360.5 1116 63.3
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1357.8 1137 62.6
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1356.3 1119 64.3
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1354.3 1096 63.9
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1350.1 1117 63.0
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1345.9 1112 63.2
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1345.5 1177 59.1
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1345.1 1113 62.6
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1337.0 1113 62.5
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1337.0 1112 62.8
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1335.9 1122 62.2
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1334.7 1121 62.5
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1334.7 1121 62.5
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1332.0 1117 62.2
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1331.2 1118 63.1
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1330.9 1113 62.4
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1325.8 1113 62.8
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1323.5 1111 62.6
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1320.8 1114 61.1
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1320.1 1110 62.4
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1305.4 1202 58.1
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1298.9 1006 68.3
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1297.3 1118 61.4
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1297.0 1101 61.5
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1292.3 1119 61.3
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1289.2 1135 60.4
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1287.7 1120 60.9
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1287.3 1112 61.1
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1271.1 1126 59.9
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1265.8 1188 57.2
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1253.8 1019 64.6
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1250.0 953 69.3
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1243.8 959 67.6
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1230.3 1008 62.3
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1229.5 1112 58.0
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1220.3 1158 57.7
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1216.4 841 71.1
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1209.1 793 74.7
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1160.6 1125 56.0
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1132.1 904 65.0
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 0.0e+00 1097.0 1100 54.6
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 7.6e-312 1074.7 756 69.6
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 2.0e-310 1069.3 1164 50.3
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 5.8e-294 1014.6 798 66.0
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.5e-281 973.4 1036 51.6
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.5e-278 963.4 647 73.7
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.1e-268 930.6 1140 46.2
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.8e-258 896.7 1030 49.0
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.7e-258 894.8 1151 45.2
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 8.5e-245 851.3 820 55.1
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 2.6e-238 829.7 1103 43.3
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.7e-205 720.7 975 43.6
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 1.5e-177 627.9 1115 37.7
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 1.7e-165 587.8 410 71.0
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 4.3e-164 583.2 458 62.9
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 2.1e-155 554.3 1136 35.2
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.9e-154 549.3 537 55.1
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 6.9e-122 443.0 324 64.5
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 3.1e-106 391.0 297 64.0
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 6.8e-101 373.2 1169 26.9
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 4.7e-86 323.9 529 41.2
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.0e-85 321.2 233 70.8
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.6e-73 282.3 381 43.8
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.8e-69 266.9 261 54.4
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.4e-68 264.2 258 54.7
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.5e-63 249.2 382 41.9
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 8.9e-61 240.0 215 57.2
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.8e-60 237.3 229 55.0
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 5.4e-58 230.7 231 55.4
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.9e-50 205.7 223 52.5
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.9e-50 205.7 223 52.5
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.9e-50 205.7 223 52.5
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 7.1e-50 203.8 223 52.0
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.6e-49 202.6 223 52.0
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.3e-47 194.5 243 45.7
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 6.2e-46 190.7 354 35.9
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 2.0e-44 185.7 211 54.0
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.0e-40 171.8 223 47.5
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.7e-35 156.0 143 58.7
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 1.9e-34 152.5 242 41.7
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 3.2e-34 151.8 242 41.7
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 3.9e-32 144.8 242 40.5
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 2.8e-30 138.7 355 30.1
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.0e-29 133.7 241 38.6
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.3e-24 119.8 81 71.6
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 7.6e-20 104.0 103 54.4
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 1.0e-19 103.6 316 27.8
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 6.1e-17 94.4 129 49.6
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.0e-16 93.6 58 69.0
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 1.5e-15 89.7 55 74.5
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 1.4e-13 83.2 77 61.0
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.4e-10 70.5 73 54.8


User provided reference genes

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