Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 3.5e-115 418.3 213 100.0
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 4.4e-33 145.6 174 52.3
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 1.3e-32 144.1 223 43.9
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 4.9e-32 142.1 204 49.0
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 8.3e-32 141.4 182 51.1
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 1.1e-31 141.0 153 54.2
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 1.6e-30 137.1 173 51.4
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 2.7e-30 136.3 185 49.2
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 5.9e-30 135.2 172 51.7
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 2.3e-29 133.3 153 51.6
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 8.6e-29 131.3 202 45.5
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.3e-28 129.4 161 47.8
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 4.3e-28 129.0 161 47.8
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 7.3e-28 128.3 218 43.6
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 1.2e-27 127.5 217 44.7
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 3.6e-27 125.9 168 47.6
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 1.8e-26 123.6 195 42.6
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 2.3e-26 123.2 168 47.6
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 5.2e-26 122.1 174 48.9
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.0e-25 120.2 155 47.7
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 1.7e-24 117.1 152 48.7
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 2.2e-24 116.7 153 44.4
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 2.2e-24 116.7 160 48.8
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 8.3e-24 114.8 217 42.4
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 8.3e-24 114.8 150 46.7
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 8.3e-24 114.8 153 45.1
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 1.1e-23 114.4 156 44.2
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.4e-23 114.0 159 44.0
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 1.4e-23 114.0 168 44.0
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 3.2e-23 112.8 160 43.8
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 5.4e-23 112.1 172 44.8
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 5.4e-23 112.1 172 44.8
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 5.4e-23 112.1 199 39.7
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 1.2e-22 110.9 159 42.8
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 2.7e-22 109.8 188 41.5
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 2.7e-22 109.8 172 44.2
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 5.9e-22 108.6 182 40.7
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 5.9e-22 108.6 181 41.4
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 7.8e-22 108.2 170 41.2
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 3.9e-21 105.9 198 38.9
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 5.0e-21 105.5 185 40.5
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 6.6e-21 105.1 218 38.5
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 1.1e-20 104.4 174 43.7
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.1e-20 104.4 142 45.1
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.1e-20 104.4 142 45.1
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.2e-19 100.9 170 40.0
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 1.6e-19 100.5 154 44.2
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 8.0e-19 98.2 213 35.7
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 4.0e-18 95.9 193 35.8
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 5.2e-18 95.5 162 40.7
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 8.9e-18 94.7 197 35.5
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 8.9e-18 94.7 193 35.8
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 9.8e-17 91.3 202 37.6
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 1.7e-16 90.5 120 47.5
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 1.7e-16 90.5 142 42.3
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 2.2e-16 90.1 199 37.7
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 4.1e-15 85.9 165 35.8
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 5.4e-15 85.5 161 35.4
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 7.0e-15 85.1 140 39.3
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 9.2e-15 84.7 137 39.4
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 7.8e-14 81.6 153 37.9
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 7.8e-14 81.6 230 31.7
Cpa.g.sc130.62 Carica papaya HOM05D006554 ORTHO05D008778 1.7e-13 80.5 92 51.1
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 3.0e-13 79.7 188 32.4
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 6.6e-13 78.6 96 52.1
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 8.6e-13 78.2 179 35.8
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.9e-12 77.0 108 45.4
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 1.9e-12 77.0 198 33.3
Gorai.011G128000 Gossypium raimondii HOM05D006554 ORTHO05D008778 3.3e-12 76.3 108 45.4
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.6e-11 73.9 86 47.7
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 2.1e-11 73.6 99 46.5
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 4.7e-11 72.4 158 33.5
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 1.1e-10 71.2 186 31.7
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 1.1e-10 71.2 148 36.5
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 2.3e-10 70.1 146 37.7
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 2.3e-10 70.1 136 39.0
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 4.0e-10 69.3 137 38.0
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 6.8e-10 68.6 139 40.3
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 2.2e-08 63.5 122 41.0
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 8.3e-08 61.6 151 35.8
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.9e-07 60.5 164 32.3
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 2.4e-07 60.1 187 28.3
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 4.1e-07 59.3 104 40.4
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 7.1e-07 58.5 150 32.0
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 2.7e-06 56.6 110 33.6
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 2.7e-06 56.6 117 38.5
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 6.0e-06 55.5 119 36.1
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 6.0e-06 55.5 119 36.1


User provided reference genes

Program Settings