Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 1.1e-129 466.8 267 100.0
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 1.1e-86 323.9 248 71.0
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 3.4e-83 312.4 254 73.6
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 3.9e-79 298.9 264 64.8
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 3.3e-78 295.8 267 63.3
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 3.3e-78 295.8 253 68.0
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 6.2e-77 291.6 246 69.5
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 1.1e-76 290.8 244 64.3
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 2.6e-75 286.2 273 63.0
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 5.8e-75 285.0 258 66.7
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 1.7e-74 283.5 273 61.9
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 8.4e-74 281.2 257 65.8
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 2.4e-73 279.6 255 64.7
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 3.2e-73 279.3 260 62.3
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 9.3e-73 277.7 269 61.7
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 2.7e-72 276.2 254 66.1
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 2.3e-71 273.1 279 60.2
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 5.1e-71 271.9 249 64.7
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 1.1e-70 270.8 274 62.0
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 4.3e-70 268.9 282 59.9
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 4.3e-70 268.9 249 64.3
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 9.6e-70 267.7 263 63.5
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.6e-69 266.9 261 56.7
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 1.6e-69 266.9 280 59.3
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.6e-69 265.8 275 59.6
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 4.8e-69 265.4 265 61.1
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 6.2e-69 265.0 256 58.2
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 8.1e-69 264.6 252 60.3
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 1.4e-68 263.8 252 58.3
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 4.0e-68 262.3 266 61.3
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 5.3e-68 261.9 296 54.7
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 6.9e-68 261.5 292 57.2
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 6.9e-68 261.5 278 58.3
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 9.0e-68 261.2 268 57.1
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 9.0e-68 261.2 273 59.7
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.2e-67 260.8 249 63.1
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 9.9e-67 257.7 249 61.8
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 9.9e-67 257.7 290 55.2
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 9.9e-67 257.7 251 58.6
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 1.1e-65 254.2 261 55.9
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 3.2e-65 252.7 267 59.9
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 5.5e-65 251.9 283 60.1
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 7.1e-65 251.5 255 61.2
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 1.6e-64 250.4 261 59.8
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 1.6e-64 250.4 254 55.9
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 6.0e-64 248.4 254 57.1
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 7.9e-64 248.1 268 60.1
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 7.9e-64 248.1 251 59.4
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.0e-63 247.7 253 58.1
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 2.3e-63 246.5 259 52.9
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 8.7e-63 244.6 268 54.5
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 3.3e-62 242.7 286 52.1
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 3.3e-62 242.7 284 53.5
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 3.3e-62 242.7 245 58.0
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 5.6e-62 241.9 266 54.1
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 7.4e-62 241.5 258 54.3
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 1.6e-61 240.4 253 55.3
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 2.1e-61 240.0 263 58.6
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 6.2e-61 238.4 271 56.8
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 8.1e-61 238.0 230 61.7
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 3.4e-59 232.6 271 55.0
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 3.4e-59 232.6 261 57.9
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.3e-58 230.7 280 56.1
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 8.4e-58 228.0 277 55.2
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 8.4e-58 228.0 308 49.4
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 2.5e-57 226.5 275 53.8
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 7.1e-57 224.9 225 58.2
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.6e-56 223.8 225 58.2
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 1.6e-56 223.8 258 57.0
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 2.7e-56 223.0 223 62.8
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 6.0e-56 221.9 245 55.1
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 2.3e-55 219.9 216 60.2
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 2.3e-55 219.9 255 54.1
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 8.7e-55 218.0 253 55.7
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 1.9e-54 216.9 267 50.9
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 7.4e-54 214.9 230 57.4
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 1.6e-53 213.8 225 54.7
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 1.6e-53 213.8 225 54.7
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 3.7e-53 212.6 266 53.8
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 3.7e-53 212.6 237 55.7
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 4.8e-53 212.2 275 50.2
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 8.2e-53 211.5 243 52.7
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-52 211.1 226 56.6
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.1e-52 211.1 243 50.2
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 1.1e-52 211.1 310 49.7
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 1.4e-52 210.7 220 58.2
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 2.4e-52 209.9 226 57.5
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 6.9e-52 208.4 219 60.7
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 6.9e-52 208.4 228 58.3
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 6.9e-52 208.4 285 49.1
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 1.5e-51 207.2 219 58.0
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 1.5e-51 207.2 231 52.4
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 2.0e-51 206.8 233 56.2
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 3.4e-51 206.1 221 56.6
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 4.5e-51 205.7 236 53.0
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 4.5e-51 205.7 227 58.6
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.0e-50 204.5 273 47.6
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.7e-50 203.8 262 53.1
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 2.2e-50 203.4 269 52.8
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 2.9e-50 203.0 268 50.7
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 4.2e-49 199.1 258 49.2
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 4.6e-48 195.7 283 47.0
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.3e-47 194.1 244 51.2
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 1.8e-47 193.7 252 44.8
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 6.7e-47 191.8 259 48.6
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 6.7e-47 191.8 257 48.6
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 4.3e-46 189.1 251 47.0
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 9.7e-46 188.0 249 48.6
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 8.2e-45 184.9 251 47.4
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 1.1e-44 184.5 251 48.6
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 4.1e-44 182.6 268 45.5
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.5e-43 180.6 248 48.4
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 1.5e-43 180.6 210 50.0
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 2.6e-43 179.9 245 47.8
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.0e-42 177.9 254 48.4
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 6.5e-42 175.3 242 47.9
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 1.9e-41 173.7 268 48.5
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.5e-41 173.3 239 46.0
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 2.5e-41 173.3 107 72.9
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 3.2e-41 172.9 269 48.0
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 3.2e-41 172.9 261 45.6
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 5.5e-41 172.2 111 72.1
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 9.4e-41 171.4 236 46.6
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.2e-40 171.0 257 45.5
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 3.6e-40 169.5 255 45.5
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 3.6e-40 169.5 288 40.3
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 1.0e-39 167.9 111 70.3
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 7.7e-35 151.8 101 70.3
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 2.1e-32 143.7 229 42.4
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 3.6e-32 142.9 106 63.2
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 2.3e-31 140.2 130 53.1
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 5.1e-31 139.0 240 41.7
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 1.3e-29 134.4 115 55.7
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 1.3e-29 134.4 115 55.7
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 2.2e-29 133.7 114 56.1
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 1.4e-28 131.0 265 35.8
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 2.0e-27 127.1 260 38.5
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 5.9e-27 125.6 266 36.1
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 1.7e-26 124.0 229 41.0
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 6.5e-26 122.1 108 57.4
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 7.2e-25 118.6 123 48.0
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 1.2e-24 117.9 105 56.2
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 2.7e-24 116.7 105 55.2
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 3.6e-24 116.3 88 59.1
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 6.1e-24 115.5 127 50.4
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 3.0e-23 113.2 105 54.3
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 5.2e-23 112.5 80 67.5
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 8.8e-23 111.7 293 32.1
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 8.2e-21 105.1 88 54.5
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 7.0e-20 102.1 121 43.8
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 2.9e-18 96.7 173 39.3
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 6.3e-13 79.0 77 66.2
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 7.0e-12 75.5 121 38.8
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 9.4e-09 65.1 339 26.0
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 8.0e-08 62.0 65 46.2
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 3.0e-07 60.1 51 56.9
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 1.5e-06 57.8 63 52.4


User provided reference genes

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