Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 4.1e-82 308.1 172 100.0
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 2.2e-51 206.1 176 68.8
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 8.4e-43 177.6 173 60.1
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 2.7e-41 172.6 172 61.6
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 1.8e-40 169.9 170 54.7
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 8.7e-40 167.5 169 55.0
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 7.4e-39 164.5 173 55.5
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 1.6e-38 163.3 172 52.3
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 6.2e-38 161.4 181 50.3
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 1.1e-37 160.6 173 52.6
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 1.8e-37 159.8 173 50.3
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 9.0e-37 157.5 183 50.3
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 3.4e-36 155.6 174 51.1
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 4.5e-36 155.2 185 55.7
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 4.5e-36 155.2 173 50.9
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 5.8e-36 154.8 179 48.6
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 7.6e-36 154.5 171 57.3
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 1.3e-35 153.7 181 57.5
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 2.2e-35 152.9 178 44.4
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 8.4e-35 151.0 183 47.0
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 1.9e-34 149.8 178 46.1
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 3.2e-34 149.1 178 48.9
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 5.5e-34 148.3 174 45.4
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 1.2e-33 147.1 178 43.8
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 1.0e-32 144.1 178 50.6
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 1.8e-32 143.3 179 45.8
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 1.8e-32 143.3 174 60.3
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 2.3e-32 142.9 177 52.0
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 3.0e-32 142.5 176 51.7
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 3.0e-32 142.5 177 52.5
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 5.1e-32 141.7 177 50.3
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 6.7e-32 141.4 188 51.1
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 8.7e-32 141.0 182 46.2
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 1.5e-31 140.2 180 44.4
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 1.5e-31 140.2 177 48.6
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 2.5e-31 139.4 180 50.0
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 3.3e-31 139.0 180 42.8
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 3.3e-31 139.0 176 47.7
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 4.3e-31 138.7 165 47.3
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 4.3e-31 138.7 169 45.6
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 5.7e-31 138.3 176 47.7
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 7.4e-31 137.9 178 46.6
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 9.7e-31 137.5 175 45.1
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.3e-30 137.1 180 49.4
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 1.3e-30 137.1 175 42.9
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 1.6e-30 136.7 178 46.6
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 1.6e-30 136.7 170 44.7
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 2.2e-30 136.3 174 43.1
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 8.2e-30 134.4 174 50.0
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 1.8e-29 133.3 179 52.5
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 2.4e-29 132.9 174 47.1
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 2.4e-29 132.9 177 45.2
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 3.1e-29 132.5 172 47.7
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 4.1e-29 132.1 175 51.4
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 6.9e-29 131.3 180 48.3
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 9.0e-29 131.0 190 38.9
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 9.0e-29 131.0 180 48.3
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 9.0e-29 131.0 180 48.3
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 1.5e-28 130.2 186 42.5
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 1.5e-28 130.2 180 43.3
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 2.6e-28 129.4 207 47.3
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 3.4e-28 129.0 176 45.5
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 5.9e-28 128.3 185 41.6
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 5.9e-28 128.3 180 50.0
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 5.9e-28 128.3 123 55.3
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 7.6e-28 127.9 169 46.7
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 1.0e-27 127.5 170 51.2
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 1.7e-27 126.7 171 52.0
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 1.7e-27 126.7 165 53.9
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 3.8e-27 125.6 179 41.3
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 6.5e-27 124.8 185 42.2
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 6.5e-27 124.8 176 42.6
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 1.4e-26 123.6 176 44.9
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 1.9e-26 123.2 186 38.7
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 1.9e-26 123.2 177 46.9
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 1.9e-26 123.2 176 51.1
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 1.9e-26 123.2 183 41.0
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 2.5e-26 122.9 179 44.1
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 2.5e-26 122.9 167 47.3
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 3.2e-26 122.5 171 40.4
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 4.2e-26 122.1 177 43.5
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 9.3e-26 120.9 173 42.2
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 1.2e-25 120.6 177 41.2
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 1.2e-25 120.6 168 42.9
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 2.1e-25 119.8 186 39.2
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 2.7e-25 119.4 185 41.6
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 3.6e-25 119.0 174 36.2
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 4.6e-25 118.6 174 54.6
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 6.1e-25 118.2 180 41.1
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 1.0e-24 117.5 179 50.3
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 1.3e-24 117.1 168 41.7
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 1.3e-24 117.1 168 41.1
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 1.8e-24 116.7 201 44.3
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 1.8e-24 116.7 175 40.0
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 1.8e-24 116.7 177 39.5
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 1.8e-24 116.7 175 40.0
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 3.0e-24 115.9 177 41.2
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 5.1e-24 115.2 180 40.0
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 5.1e-24 115.2 211 43.1
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 1.9e-23 113.2 176 48.3
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 2.5e-23 112.8 180 38.9
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 3.3e-23 112.5 180 38.9
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 4.3e-23 112.1 176 40.9
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 9.7e-23 110.9 180 39.4
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 9.7e-23 110.9 180 39.4
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 9.7e-23 110.9 175 48.0
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 1.7e-22 110.2 180 41.1
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 1.7e-22 110.2 164 37.8
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 2.2e-22 109.8 165 35.8
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 5.3e-21 105.1 178 39.3
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 6.9e-21 104.8 167 49.1
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 9.1e-21 104.4 166 38.0
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 2.6e-20 102.8 168 33.9
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 1.0e-19 100.9 154 37.7
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 1.3e-19 100.5 153 38.6
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 2.2e-19 99.8 126 43.7
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 2.9e-19 99.4 171 38.0
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 7.2e-18 94.7 172 41.3
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 1.0e-16 90.9 169 32.0
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 2.3e-16 89.7 160 36.9
Dinv25725 Davidia involucrata HOM05D005478 ORTHO05D006426 6.9e-13 78.2 119 47.1
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 1.5e-12 77.0 118 42.4
Dinv33426 Davidia involucrata HOM05D005478 ORTHO05D006426 2.9e-11 72.8 50 72.0
EL10Ac6g14100 Beta vulgaris HOM05D005478 ORTHO05D006426 6.5e-11 71.6 124 47.6
Cc07_g01510 Coffea canephora HOM05D005478 ORTHO05D006426 1.1e-10 70.9 71 50.7
Os02g0595300 Oryza sativa ssp. japonica HOM05D005478 ORTHO05D006426 1.1e-10 70.9 172 37.2
Zm00001eb183740 Zea mays HOM05D044595 ORTHO05D006426 1.4e-08 63.9 169 28.4
Nn3g16214 Nelumbo nucifera HOM05D005478 ORTHO05D006426 1.8e-08 63.5 52 53.8
Lju41C43G9 Lonicera japonica HOM05D005478 ORTHO05D006426 3.0e-08 62.8 124 46.0
Nitab4.5_0000326g0190 Nicotiana tabacum HOM05D006502 ORTHO05D007704 6.7e-08 61.6 49 61.2
MBI07_g39476_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 4.4e-07 58.9 53 49.1
MBI10_g11211_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 5.7e-07 58.5 53 47.2
Oeu018990.1 Olea europaea HOM05D005478 ORTHO05D006426 7.4e-07 58.2 75 68.0
Nitab4.5_0005593g0050 Nicotiana tabacum HOM05D005478 ORTHO05D006426 1.7e-06 57.0 150 27.3
Gorai.009G134600 Gossypium raimondii HOM05D005478 ORTHO05D006426 2.8e-06 56.2 53 56.6


User provided reference genes

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