Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2426 Acer truncatum HOM05D003450 ORTHO05D004150 0.0e+00 1171.0 611 100.0
Ciclev10014189m.g Citrus clementina HOM05D003450 ORTHO05D004150 1.4e-294 1015.8 592 89.0
QL03p035003 Quercus lobata HOM05D003450 ORTHO05D004150 1.9e-291 1005.4 594 86.4
QL02p074015 Quercus lobata HOM05D003450 ORTHO05D004150 4.3e-291 1004.2 594 86.5
Cfa007340 Carpinus fangiana HOM05D003450 ORTHO05D004150 2.8e-290 1001.5 594 86.7
Dinv37611 Davidia involucrata HOM05D003450 ORTHO05D004150 5.8e-288 993.8 591 85.6
Potri.001G343500 Populus trichocarpa HOM05D003450 ORTHO05D004150 7.1e-286 986.9 594 84.5
Sabra16G0222800 Salix brachista HOM05D003450 ORTHO05D004150 2.7e-285 984.9 594 84.5
Thecc.04G019300 Theobroma cacao HOM05D003450 ORTHO05D004150 6.0e-285 983.8 592 86.7
Manes.17G111200 Manihot esculenta HOM05D003450 ORTHO05D004150 1.3e-284 982.6 594 85.2
TAR623G1303 Trochodendron aralioides HOM05D003450 ORTHO05D004150 3.9e-284 981.1 598 83.9
CiPaw.09G022500 Carya illinoinensis HOM05D003450 ORTHO05D004150 4.3e-283 977.6 594 85.0
GSVIVG01000649001 Vitis vinifera HOM05D003450 ORTHO05D004150 5.6e-283 977.2 586 86.3
Haze_14757 Corylus avellana HOM05D003450 ORTHO05D004150 4.8e-282 974.2 586 85.5
Gorai.012G065100 Gossypium raimondii HOM05D003450 ORTHO05D004150 2.4e-281 971.8 592 84.5
CSS0002385 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.4e-280 968.0 587 84.0
MD09G1023300 Malus domestica HOM05D003450 ORTHO05D004150 7.1e-278 960.3 593 83.3
CANSAT64G2043 Cannabis sativa HOM05D003450 ORTHO05D004150 9.3e-278 959.9 594 83.2
Duzib147G0628 Durio zibethinus HOM05D003450 ORTHO05D004150 9.3e-278 959.9 590 84.6
Eucgr.I01732 Eucalyptus grandis HOM05D003450 ORTHO05D004150 1.2e-277 959.5 593 83.0
TWI56G0323 Tripterygium wilfordii HOM05D003450 ORTHO05D004150 1.0e-276 956.4 594 83.3
MD17G1022800 Malus domestica HOM05D003450 ORTHO05D004150 1.8e-276 955.7 593 83.0
RcHm_v2.0_Chr2g0173241 Rosa chinensis HOM05D003450 ORTHO05D004150 2.3e-276 955.3 593 82.8
Glyma.19G056700 Glycine max HOM05D003450 ORTHO05D004150 7.4e-275 950.3 594 83.0
FvH4_6g51710 Fragaria vesca HOM05D003450 ORTHO05D004150 9.0e-273 943.3 593 81.8
Prupe.3G293600 Prunus persica HOM05D003450 ORTHO05D004150 9.0e-273 943.3 593 82.0
Peaxi162Scf00074g01921 Petunia axillaris HOM05D003450 ORTHO05D004150 1.5e-272 942.6 595 81.2
FAN14G2265 Fragaria x ananassa HOM05D003450 ORTHO05D004150 2.6e-272 941.8 593 81.6
Ca_04147_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 4.5e-272 941.0 595 81.5
Ca_30596_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 4.5e-272 941.0 595 81.5
FAN05G3254 Fragaria x ananassa HOM05D003450 ORTHO05D004150 7.6e-272 940.3 593 81.6
Medtr6g004510 Medicago truncatula HOM05D003450 ORTHO05D004150 3.8e-271 937.9 602 80.7
Hma1.2p1_1136F.1_g260470 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 1.1e-270 936.4 586 82.6
Hma1.2p1_1172F.1_g263680 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 1.4e-270 936.0 586 82.8
Lj2g0026665 Lotus japonicus HOM05D003450 ORTHO05D004150 2.4e-270 935.3 594 81.8
MELO3C021591.2 Cucumis melo HOM05D003450 ORTHO05D004150 3.2e-270 934.9 594 81.0
PGR142G3144 Punica granatum HOM05D003450 ORTHO05D004150 9.3e-270 933.3 596 81.2
TPR.G31948 Trifolium pratense HOM05D003450 ORTHO05D004150 2.1e-269 932.2 595 81.0
Nitab4.5_0006540g0050 Nicotiana tabacum HOM05D003450 ORTHO05D004150 2.7e-269 931.8 598 80.1
Glyma.19G003200 Glycine max HOM05D003450 ORTHO05D004150 2.3e-268 928.7 596 80.7
Psat1g053760 Pisum sativum HOM05D003450 ORTHO05D004150 2.3e-268 928.7 596 81.4
CsaV3_5G027040 Cucumis sativus L. HOM05D003450 ORTHO05D004150 3.0e-268 928.3 594 80.5
Gohir.D04G058400 Gossypium hirsutum HOM05D003450 ORTHO05D004150 3.0e-268 928.3 569 84.2
Nn2g10559 Nelumbo nucifera HOM05D003450 ORTHO05D004150 5.1e-268 927.5 598 79.9
Migut.E01197 Erythranthe guttata HOM05D003450 ORTHO05D004150 6.7e-268 927.2 594 79.8
Manes.15G151800 Manihot esculenta HOM05D003450 ORTHO05D004150 6.7e-268 927.2 547 86.1
Nitab4.5_0002282g0060 Nicotiana tabacum HOM05D003450 ORTHO05D004150 6.7e-268 927.2 596 79.7
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 2.5e-267 925.2 566 84.8
Cc08_g15080 Coffea canephora HOM05D003450 ORTHO05D004150 3.3e-267 924.9 593 79.4
Sed0008503 Sechium edule HOM05D003450 ORTHO05D004150 5.6e-267 924.1 594 80.1
Lalb_Chr18g0055341 Lupinus albus HOM05D003450 ORTHO05D004150 9.6e-267 923.3 594 80.0
Sopen08g029730 Solanum pennellii HOM05D003450 ORTHO05D004150 3.7e-266 921.4 594 79.1
CAN.G532.15 Capsicum annuum HOM05D003450 ORTHO05D004150 6.2e-266 920.6 594 79.5
Sed0014883 Sechium edule HOM05D003450 ORTHO05D004150 2.4e-265 918.7 594 79.6
Oeu042349.1 Olea europaea HOM05D003450 ORTHO05D004150 6.9e-265 917.1 588 78.9
Phvul.004G005200 Phaseolus vulgaris HOM05D003450 ORTHO05D004150 2.2e-263 912.1 596 79.2
MSTRG.11963 Avicennia marina HOM05D003450 ORTHO05D004150 8.4e-263 910.2 594 78.6
VMungo0464G1019 Vigna mungo HOM05D003450 ORTHO05D004150 6.0e-261 904.0 596 78.7
Lalb_Chr15g0086731 Lupinus albus HOM05D003450 ORTHO05D004150 1.3e-260 902.9 594 78.6
ClCG09G019370 Citrullus lanatus HOM05D003450 ORTHO05D004150 8.7e-260 900.2 602 77.6
SGA_v2.0_scaffold76G25156 Striga asiatica HOM05D003450 ORTHO05D004150 3.7e-258 894.8 595 77.5
THA.LOC104823952 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 4.8e-258 894.4 600 76.2
DCAR_004619 Daucus carota HOM05D003450 ORTHO05D004150 1.8e-257 892.5 594 76.8
THA.LOC104825318 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 2.4e-257 892.1 594 76.3
Aqoxy6G00591 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 2.6e-256 888.6 602 76.1
Lsat_1_v5_gn_3_9121 Lactuca sativa HOM05D003450 ORTHO05D004150 4.5e-256 887.9 613 76.0
C07p36640 Brassica napus HOM05D003450 ORTHO05D004150 1.3e-255 886.3 594 75.6
A06p41100 Brassica napus HOM05D003450 ORTHO05D004150 2.2e-255 885.6 594 75.6
BraA06t27033Z Brassica rapa HOM05D003450 ORTHO05D004150 2.2e-255 885.6 594 75.6
arahy.Tifrunner.gnm1.ann1.Q7XHAR Arachis hypogaea HOM05D003450 ORTHO05D004150 2.9e-255 885.2 609 76.7
Sc07g0005180 Simmondsia chinensis HOM05D003450 ORTHO05D004150 2.9e-255 885.2 594 75.9
vmacro11398 Vaccinium macrocarpon HOM05D003450 ORTHO05D004150 5.0e-255 884.4 670 71.9
BcaC06g33806 Brassica carinata HOM05D003450 ORTHO05D004150 1.4e-254 882.9 594 75.3
SalBow8G1997 Salvia bowleyana HOM05D003450 ORTHO05D004150 1.4e-254 882.9 597 75.5
BcaC06g30980 Brassica carinata HOM05D003450 ORTHO05D004150 3.2e-254 881.7 594 75.6
ECA246G5325 Erigeron canadensis HOM05D003450 ORTHO05D004150 1.6e-253 879.4 597 77.1
BolC7t44182H Brassica oleracea HOM05D003450 ORTHO05D004150 3.6e-253 878.2 595 75.1
FAN09G1073 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.8e-252 875.9 593 77.4
C02p54300 Brassica napus HOM05D003450 ORTHO05D004150 2.3e-252 875.5 592 74.2
BolC2t11498H Brassica oleracea HOM05D003450 ORTHO05D004150 2.3e-252 875.5 592 74.2
BraA02t08553Z Brassica rapa HOM05D003450 ORTHO05D004150 1.5e-251 872.8 592 74.2
MBI14_g36922_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 1.5e-251 872.8 603 75.3
AUR62034774 Chenopodium quinoa HOM05D003450 ORTHO05D004150 3.3e-251 871.7 598 74.2
CARHR148900 Cardamine hirsuta HOM05D003450 ORTHO05D004150 4.3e-251 871.3 593 75.2
A02p35530 Brassica napus HOM05D003450 ORTHO05D004150 2.8e-250 868.6 592 74.0
HanXRQChr17g0533281 Helianthus annuus HOM05D003450 ORTHO05D004150 4.8e-250 867.8 598 76.8
Aa31LG2G5130 Aethionema arabicum HOM05D003450 ORTHO05D004150 1.1e-249 866.7 595 74.5
BcaC03g17471 Brassica carinata HOM05D003450 ORTHO05D004150 1.5e-248 862.8 593 73.4
arahy.Tifrunner.gnm1.ann1.F3BVF1 Arachis hypogaea HOM05D003450 ORTHO05D004150 3.4e-248 861.7 595 76.3
AUR62009512 Chenopodium quinoa HOM05D003450 ORTHO05D004150 5.9e-248 860.9 569 76.4
FAN02G3092 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.7e-247 859.4 603 75.0
Ah.02g116930 Amaranthus hybridus HOM05D003450 ORTHO05D004150 2.9e-247 858.6 594 74.1
BcaB07g30154 Brassica carinata HOM05D003450 ORTHO05D004150 5.0e-247 857.8 594 73.6
PSO421G0225 Papaver somniferum HOM05D003450 ORTHO05D004150 6.5e-247 857.4 602 73.3
PSO063G0895 Papaver somniferum HOM05D003450 ORTHO05D004150 2.5e-246 855.5 602 73.3
Sp2g16700 Schrenkiella parvula HOM05D003450 ORTHO05D004150 9.4e-246 853.6 594 73.2
ECA233G1844 Erigeron canadensis HOM05D003450 ORTHO05D004150 2.3e-244 849.0 597 74.2
Thhalv10003626m.g Eutrema salsugineum HOM05D003450 ORTHO05D004150 3.9e-244 848.2 593 73.2
SalBow8G1100 Salvia bowleyana HOM05D003450 ORTHO05D004150 1.5e-243 846.3 595 72.8
AT3G27530 Arabidopsis thaliana HOM05D003450 ORTHO05D004150 2.0e-243 845.9 594 72.7
AL5G16950 Arabidopsis lyrata HOM05D003450 ORTHO05D004150 1.7e-242 842.8 594 72.4
Carub.0005s0596 Capsella rubella HOM05D003450 ORTHO05D004150 1.7e-242 842.8 594 72.9
Duzib264G1290 Durio zibethinus HOM05D003450 ORTHO05D004150 1.1e-241 840.1 504 85.3
Lj5C248G9 Lonicera japonica HOM05D003450 ORTHO05D004150 8.8e-236 820.5 601 74.2
unitig_61.g26360 Utricularia gibba HOM05D003450 ORTHO05D004150 1.6e-229 799.7 600 68.8
Hund15478 Selenicereus undatus HOM05D003450 ORTHO05D004150 2.1e-229 799.3 572 72.9
Lj8A217T73 Lonicera japonica HOM05D003450 ORTHO05D004150 1.0e-228 797.0 580 74.5
ATR0068G094 Amborella trichopoda HOM05D003450 ORTHO05D004150 1.4e-228 796.6 591 69.5
Solyc08g081410.3 Solanum lycopersicum HOM05D003450 ORTHO05D004150 7.2e-222 774.2 594 69.4
CSS0005577 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.0e-220 768.8 627 68.7
Os12g0538900 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 1.5e-219 766.5 589 65.9
CDE09G0700 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 4.1e-217 758.4 567 67.5
Actinidia14585 Actinidia chinensis HOM05D003450 ORTHO05D004150 4.5e-216 755.0 491 79.8
HPP92_017150 Vanilla planifolia HOM05D003450 ORTHO05D004150 1.0e-212 743.8 598 64.7
EL10Ac5g11313 Beta vulgaris HOM05D003450 ORTHO05D004150 1.5e-211 740.0 537 71.7
PSO210G4892 Papaver somniferum HOM05D003450 ORTHO05D004150 1.3e-210 736.9 600 66.2
HPP92_017154 Vanilla planifolia HOM05D003450 ORTHO05D004150 4.9e-210 734.9 594 64.6
PSO210G3071 Papaver somniferum HOM05D003450 ORTHO05D004150 1.1e-206 723.8 600 65.7
CDE02G4242 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 1.6e-197 693.3 516 67.8
CSS0048429 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.1e-196 689.1 606 65.7
CSS0024266 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.9e-194 682.6 634 63.9
Hund02491 Selenicereus undatus HOM05D003450 ORTHO05D004150 2.2e-186 656.4 508 68.3
Mapoly0097s0078 Marchantia polymorpha HOM05D003450 ORTHO05D004150 9.2e-185 651.0 598 58.0
Zm00001eb410430 Zea mays HOM05D003450 ORTHO05D004150 1.9e-182 643.3 589 59.1
AagrBONN_evm.TU.Sc2ySwM_344.991 Anthoceros agrestis HOM05D003450 ORTHO05D004150 1.2e-181 640.6 592 57.8
COL.COLO4_29171 Corchorus olitorius HOM05D003450 ORTHO05D004150 5.2e-180 635.2 454 76.0
Pp3c3_27420 Physcomitrium patens HOM05D003450 ORTHO05D004150 3.5e-176 622.5 598 55.2
SMO367G1196 Selaginella moellendorffii HOM05D003450 ORTHO05D004150 7.3e-174 614.8 591 55.7
Actinidia28359 Actinidia chinensis HOM05D003450 ORTHO05D004150 8.2e-149 531.6 528 60.2
Gohir.A05G354700 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.5e-131 474.2 299 78.6
Solyc02g084490.1 Solanum lycopersicum HOM05D003450 ORTHO05D004150 1.4e-127 461.1 420 58.6
CAN.G1274.36 Capsicum annuum HOM05D003450 ORTHO05D004150 2.6e-123 446.8 469 56.9
Dinv38912 Davidia involucrata HOM05D003450 ORTHO05D004150 4.1e-108 396.4 233 90.1
Gohir.A05G354750 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.5e-105 387.9 228 90.4
C02p55220 Brassica napus HOM05D003450 ORTHO05D004150 1.3e-98 364.8 424 51.7
CBR_g57070 Chara braunii HOM05D003450 ORTHO05D004150 3.0e-95 353.6 804 34.1
Zm00001eb137680 Zea mays HOM05D003450 ORTHO05D004150 2.8e-88 330.5 299 53.5
MCO05G130 Micromonas commoda HOM05D003450 ORTHO05D004150 4.0e-87 326.6 653 36.9
Hma1.2p1_1136F.1_g260480 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 1.9e-84 317.8 205 75.1
BolC2t11570H Brassica oleracea HOM05D003450 ORTHO05D004150 1.2e-80 305.1 444 45.3
CSS0021042 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.0e-74 285.4 240 64.2
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 7.3e-73 279.3 205 73.7
PRCOL_00005576 Prasinoderma coloniale HOM05D003450 ORTHO05D004150 4.7e-64 250.0 597 33.5
Zm00001eb137620 Zea mays HOM05D003450 ORTHO05D004150 2.0e-62 244.6 178 71.3
BcaC03g17544 Brassica carinata HOM05D003450 ORTHO05D004150 2.6e-62 244.2 422 39.8
arahy.Tifrunner.gnm1.ann1.ST064T Arachis hypogaea HOM05D003450 ORTHO05D004150 2.4e-60 237.7 321 51.1
SEGI_37208 Sequoiadendron giganteum HOM05D003450 ORTHO05D004150 7.1e-60 236.1 215 63.7
Cre06.g271950 Chlamydomonas reinhardtii HOM05D003450 ORTHO05D004150 1.9e-57 228.0 727 28.3
Oeu059564.1 Olea europaea HOM05D003450 ORTHO05D004150 8.1e-56 222.6 142 73.9
Gohir.D07G231100 Gossypium hirsutum HOM05D003450 ORTHO05D004150 2.6e-54 217.6 156 71.2
Prupe.3G293500 Prunus persica HOM05D003450 ORTHO05D004150 5.8e-54 216.5 134 85.8
PGSC0003DMG400012328 Solanum tuberosum HOM05D003450 ORTHO05D004150 2.7e-51 207.6 142 71.1
Solyc02g075610.4 Solanum lycopersicum HOM05D003450 ORTHO05D004150 2.5e-49 201.1 151 67.5
CSS0043437 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 9.6e-41 172.6 124 70.2
RcHm_v2.0_Chr2g0173251 Rosa chinensis HOM05D003450 ORTHO05D004150 4.5e-38 163.7 182 51.6
Cfa023435 Carpinus fangiana HOM05D003450 ORTHO05D125710 1.0e-34 152.5 231 41.6
CAN.G293.1 Capsicum annuum HOM05D003450 ORTHO05D004150 6.7e-34 149.8 131 59.5
Hund02493 Selenicereus undatus HOM05D003450 ORTHO05D004150 5.3e-31 140.2 86 83.7
CSS0016783 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.6e-27 128.6 86 69.8
EL10Ac5g11312 Beta vulgaris HOM05D003450 ORTHO05D004150 1.8e-26 125.2 81 76.5
MBI14_g35409_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 1.5e-25 122.1 123 54.5
MBI14_g31103_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 5.9e-22 110.2 125 51.2
Zm00001eb128800 Zea mays HOM05D003450 ORTHO05D004150 1.7e-21 108.6 89 58.4
arahy.Tifrunner.gnm1.ann1.CAW9WT Arachis hypogaea HOM05D003450 ORTHO05D026894 3.8e-21 107.5 90 67.8
arahy.Tifrunner.gnm1.ann1.F4W2B8 Arachis hypogaea HOM05D003450 ORTHO05D004150 5.0e-21 107.1 91 67.0
TPR.G33285 Trifolium pratense HOM05D003450 ORTHO05D004150 2.5e-20 104.8 373 27.3
Hma1.2p1_0035F.1_g022380 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 1.6e-19 102.1 86 60.5
arahy.Tifrunner.gnm1.ann1.84ZZZT Arachis hypogaea HOM05D003450 ORTHO05D026894 1.5e-14 85.5 76 64.5
Os09g0135100 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 2.6e-14 84.7 63 66.7
FvH4_1g06690 Fragaria vesca HOM05D003450 ORTHO05D004150 9.7e-09 66.2 41 80.5
CSS0043641 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D110033 1.8e-07 62.0 84 47.6
CSS0014830 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D112628 3.1e-07 61.2 86 48.8
Lsat_1_v5_gn_9_20240 Lactuca sativa HOM05D000349 ORTHO05D013656 1.2e-06 59.3 50 68.0
Gohir.A11G236220 Gossypium hirsutum HOM05D003450 ORTHO05D217491 5.9e-06 57.0 62 54.8
arahy.Tifrunner.gnm1.ann1.D2JCSM Arachis hypogaea HOM05D003450 ORTHO05D026894 7.7e-06 56.6 58 56.9


User provided reference genes

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