Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2394 Acer truncatum HOM05D005666 ORTHO05D007183 0.0e+00 1415.2 719 100.0
Ciclev10014455m.g Citrus clementina HOM05D005666 ORTHO05D007183 1.3e-299 1032.7 719 74.4
QL02p074714 Quercus lobata HOM05D005666 ORTHO05D007183 8.3e-294 1013.4 717 71.3
Gohir.D04G057600 Gossypium hirsutum HOM05D005666 ORTHO05D007183 4.1e-293 1011.1 724 71.7
Gorai.012G064300 Gossypium raimondii HOM05D005666 ORTHO05D007183 5.4e-293 1010.7 724 71.8
Duzib147G1248 Durio zibethinus HOM05D005666 ORTHO05D007183 6.0e-292 1007.3 724 70.6
Potri.001G345200 Populus trichocarpa HOM05D005666 ORTHO05D007183 3.0e-291 1005.0 724 70.0
Sabra16G0224200 Salix brachista HOM05D005666 ORTHO05D007183 1.1e-290 1003.0 722 70.6
TWI56G0621 Tripterygium wilfordii HOM05D005666 ORTHO05D007183 2.8e-289 998.4 724 70.0
Cpa.g.sc130.81 Carica papaya HOM05D005666 ORTHO05D007183 1.6e-284 982.6 723 69.0
CANSAT64G2468 Cannabis sativa HOM05D005666 ORTHO05D007183 1.5e-282 976.1 721 68.7
Gohir.A05G355700 Gossypium hirsutum HOM05D005666 ORTHO05D007183 7.3e-282 973.8 704 71.6
Haze_10618 Corylus avellana HOM05D005666 ORTHO05D007183 9.5e-282 973.4 696 71.8
MD09G1027000 Malus domestica HOM05D005666 ORTHO05D007183 4.0e-280 968.0 717 68.9
COL.COLO4_29116 Corchorus olitorius HOM05D005666 ORTHO05D007183 5.2e-280 967.6 746 68.1
Thecc.04G017300 Theobroma cacao HOM05D005666 ORTHO05D007183 4.4e-279 964.5 722 68.7
MD17G1027000 Malus domestica HOM05D005666 ORTHO05D007183 4.9e-278 961.1 717 68.2
Manes.17G112200 Manihot esculenta HOM05D005666 ORTHO05D007183 1.0e-275 953.4 724 68.5
CsaV3_5G027130 Cucumis sativus L. HOM05D005666 ORTHO05D007183 1.3e-275 953.0 722 65.8
MELO3C021580.2 Cucumis melo HOM05D005666 ORTHO05D007183 3.3e-274 948.3 722 65.9
vmacro18287 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 7.3e-274 947.2 706 68.0
TAR371G0349 Trochodendron aralioides HOM05D005666 ORTHO05D007183 9.6e-274 946.8 714 68.3
Actinidia35772 Actinidia chinensis HOM05D005666 ORTHO05D007183 2.1e-273 945.7 715 67.6
Rhsim10G0213300 Rhododendron simsii HOM05D005666 ORTHO05D007183 1.1e-272 943.3 705 67.2
GSVIVG01032407001 Vitis vinifera HOM05D005666 ORTHO05D007183 6.9e-272 940.6 711 69.1
RcHm_v2.0_Chr2g0172791 Rosa chinensis HOM05D005666 ORTHO05D007183 2.0e-271 939.1 748 64.6
Hma1.2p1_0999F.1_g246210 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 1.3e-270 936.4 704 67.6
ClCG09G019260 Citrullus lanatus HOM05D005666 ORTHO05D007183 3.2e-269 931.8 722 65.7
CiPaw.03G043800 Carya illinoinensis HOM05D005666 ORTHO05D007183 5.4e-269 931.0 722 66.9
Prupe.3G291700 Prunus persica HOM05D005666 ORTHO05D007183 1.6e-268 929.5 653 71.1
FAN14G3607 Fragaria x ananassa HOM05D005666 ORTHO05D007183 3.9e-267 924.9 747 63.5
Glyma.05G003600 Glycine max HOM05D005666 ORTHO05D007183 1.5e-266 922.9 708 65.8
Sed0018750 Sechium edule HOM05D005666 ORTHO05D007183 4.3e-266 921.4 722 64.7
TPR.G14074 Trifolium pratense HOM05D005666 ORTHO05D007183 4.8e-265 917.9 719 65.5
Lj2g0025454 Lotus japonicus HOM05D005666 ORTHO05D007183 2.4e-264 915.6 702 67.4
FAN05G0542 Fragaria x ananassa HOM05D005666 ORTHO05D007183 6.9e-264 914.1 756 62.8
FAN09G4801 Fragaria x ananassa HOM05D005666 ORTHO05D007183 3.4e-263 911.8 747 62.4
VMungo0464G0315 Vigna mungo HOM05D005666 ORTHO05D007183 7.6e-263 910.6 708 65.1
FAN02G4175 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.3e-262 909.8 757 62.2
Phvul.004G006900 Phaseolus vulgaris HOM05D005666 ORTHO05D007183 1.6e-260 902.9 708 64.8
Medtr8g094170 Medicago truncatula HOM05D005666 ORTHO05D007183 2.7e-260 902.1 714 65.3
Lalb_Chr13g0300491 Lupinus albus HOM05D005666 ORTHO05D007183 2.5e-258 895.6 719 64.0
Lalb_Chr12g0199101 Lupinus albus HOM05D005666 ORTHO05D007183 1.6e-257 892.9 719 64.7
Eucgr.L01920 Eucalyptus grandis HOM05D005666 ORTHO05D007183 3.7e-257 891.7 722 63.7
Rhsim08G0049000 Rhododendron simsii HOM05D005666 ORTHO05D007183 4.8e-257 891.3 686 66.8
PGR083G1531 Punica granatum HOM05D005666 ORTHO05D007183 1.2e-255 886.7 706 64.0
arahy.Tifrunner.gnm1.ann1.XQUA9L Arachis hypogaea HOM05D005666 ORTHO05D007183 2.2e-254 882.5 716 63.8
Ca_04159_v3 Cicer arietinum L. HOM05D005666 ORTHO05D007183 2.2e-254 882.5 696 64.9
CSS0006540 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 7.1e-253 877.5 653 68.3
FvH4_6g51190 Fragaria vesca HOM05D005666 ORTHO05D007183 3.1e-248 862.1 684 63.5
AUR62026681 Chenopodium quinoa HOM05D005666 ORTHO05D007183 5.3e-248 861.3 718 62.1
CAN.G1057.3 Capsicum annuum HOM05D005666 ORTHO05D007183 1.0e-246 857.1 717 62.1
Sc03g0007440 Simmondsia chinensis HOM05D005666 ORTHO05D007183 1.0e-246 857.1 708 62.4
Migut.K01395 Erythranthe guttata HOM05D005666 ORTHO05D007183 2.9e-246 855.5 720 62.9
PGSC0003DMG400006959 Solanum tuberosum HOM05D005666 ORTHO05D007183 7.1e-245 850.9 709 62.5
Aqoxy3G01199 Aquilegia oxysepala HOM05D005666 ORTHO05D007183 1.3e-243 846.7 724 60.6
Cc07_g01670 Coffea canephora HOM05D005666 ORTHO05D007183 3.0e-243 845.5 708 61.9
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 6.7e-243 844.3 699 63.2
Nn3g16730 Nelumbo nucifera HOM05D005666 ORTHO05D007183 3.3e-242 842.0 705 62.8
Sopen02g016930 Solanum pennellii HOM05D005666 ORTHO05D007183 1.3e-241 840.1 727 60.7
Ah.05g168070 Amaranthus hybridus HOM05D005666 ORTHO05D007183 2.2e-241 839.3 716 60.1
PSO017G6377 Papaver somniferum HOM05D005666 ORTHO05D007183 2.0e-239 832.8 713 60.3
Nitab4.5_0008365g0020 Nicotiana tabacum HOM05D005666 ORTHO05D007183 1.3e-238 830.1 723 60.2
Thhalv10012831m.g Eutrema salsugineum HOM05D005666 ORTHO05D007183 2.9e-238 828.9 720 61.0
Glyma.19G004600 Glycine max HOM05D005666 ORTHO05D007183 8.5e-238 827.4 649 63.6
Hund22837 Selenicereus undatus HOM05D005666 ORTHO05D007183 1.1e-237 827.0 726 59.8
C09p57110 Brassica napus HOM05D005666 ORTHO05D007183 1.4e-237 826.6 720 60.8
BolC9t58577H Brassica oleracea HOM05D005666 ORTHO05D007183 5.5e-237 824.7 722 60.9
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 5.5e-237 824.7 689 62.1
BcaC04g18594 Brassica carinata HOM05D005666 ORTHO05D007183 3.6e-236 822.0 720 60.7
AL6G30550 Arabidopsis lyrata HOM05D005666 ORTHO05D007183 4.6e-236 821.6 719 60.9
BcaB08g36600 Brassica carinata HOM05D005666 ORTHO05D007183 4.6e-236 821.6 720 60.8
Sp6g25230 Schrenkiella parvula HOM05D005666 ORTHO05D007183 4.6e-236 821.6 719 61.2
SalBow7G2092 Salvia bowleyana HOM05D005666 ORTHO05D007183 7.9e-236 820.8 708 60.9
AT5G19130 Arabidopsis thaliana HOM05D005666 ORTHO05D007183 1.4e-235 820.1 719 60.9
PSO478G0823 Papaver somniferum HOM05D005666 ORTHO05D007183 2.3e-235 819.3 713 59.2
Aa31LG11G15280 Aethionema arabicum HOM05D005666 ORTHO05D007183 3.9e-235 818.5 718 61.0
Hma1.2p1_0999F.1_g246220 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 6.7e-235 817.8 597 69.2
A10p20490 Brassica napus HOM05D005666 ORTHO05D007183 8.8e-235 817.4 720 60.7
BraA10t44118Z Brassica rapa HOM05D005666 ORTHO05D007183 8.8e-235 817.4 720 60.8
ECA246G2761 Erigeron canadensis HOM05D005666 ORTHO05D007183 1.5e-234 816.6 716 59.6
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 5.7e-234 814.7 673 64.5
Carub.0006s1746 Capsella rubella HOM05D005666 ORTHO05D007183 2.2e-233 812.8 725 60.1
Lju41A42G100 Lonicera japonica HOM05D005666 ORTHO05D007183 6.9e-232 807.7 617 66.5
HanXRQChr15g0475291 Helianthus annuus HOM05D005666 ORTHO05D007183 3.8e-230 802.0 722 60.1
Nitab4.5_0002529g0030 Nicotiana tabacum HOM05D005666 ORTHO05D007183 9.4e-229 797.3 705 60.6
Psat1g054440 Pisum sativum HOM05D005666 ORTHO05D007183 9.4e-229 797.3 613 66.7
SGA_v2.0_scaffold47G17503 Striga asiatica HOM05D005666 ORTHO05D007183 2.7e-228 795.8 717 59.8
Peaxi162Scf00080g00117 Petunia axillaris HOM05D005666 ORTHO05D007183 3.1e-224 782.3 690 59.7
MBI16_g31718_MAGBIO Magnolia biondii HOM05D005666 ORTHO05D007183 1.2e-223 780.4 710 59.2
Solyc02g067820.4 Solanum lycopersicum HOM05D005666 ORTHO05D007183 2.2e-222 776.2 704 58.9
EL10Ac1g01578 Beta vulgaris HOM05D005666 ORTHO05D007183 3.8e-222 775.4 733 56.1
DCAR_011253 Daucus carota HOM05D005666 ORTHO05D007183 6.1e-220 768.1 786 54.3
Lsat_1_v5_gn_0_47721 Lactuca sativa HOM05D005666 ORTHO05D007183 1.4e-216 756.9 687 58.8
FAN05G2905 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.8e-216 756.5 637 62.8
HanXRQChr17g0548481 Helianthus annuus HOM05D005666 ORTHO05D007183 1.8e-216 756.5 705 57.0
CSS0011984 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 1.3e-209 733.8 592 65.2
Oeu048621.1 Olea europaea HOM05D005666 ORTHO05D007183 2.4e-208 729.6 616 61.4
CDE05G2460 Ceratophyllum demersum HOM05D005666 ORTHO05D007183 4.2e-205 718.8 716 53.5
THA.LOC104824726 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 7.5e-202 708.0 717 55.2
Zm00001eb156580 Zea mays HOM05D005666 ORTHO05D007183 2.8e-201 706.1 733 52.4
unitig_747.g21863 Utricularia gibba HOM05D005666 ORTHO05D007183 1.6e-191 673.7 717 52.9
Eucgr.J02243 Eucalyptus grandis HOM05D005666 ORTHO05D007183 1.7e-185 653.7 529 64.3
ATR0686G164 Amborella trichopoda HOM05D005666 ORTHO05D007183 1.6e-183 647.1 615 54.5
HPP92_013793 Vanilla planifolia HOM05D005666 ORTHO05D007183 2.3e-182 643.3 714 51.1
vmacro06910 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 3.6e-172 609.4 522 63.2
CSS0008870 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 9.6e-165 584.7 415 72.5
Actinidia16943 Actinidia chinensis HOM05D005666 ORTHO05D007183 3.6e-164 582.8 643 51.6
CARHR193820 Cardamine hirsuta HOM05D005666 ORTHO05D007183 3.1e-155 553.1 504 58.5
BcaB05g23370 Brassica carinata HOM05D005666 ORTHO05D007183 1.0e-142 511.5 725 47.0
AUR62040590 Chenopodium quinoa HOM05D005666 ORTHO05D007183 1.6e-140 504.2 427 62.1
AagrBONN_evm.TU.Sc2ySwM_344.4982 Anthoceros agrestis HOM05D005666 ORTHO05D007183 3.7e-116 423.3 760 36.3
Mapoly0008s0195 Marchantia polymorpha HOM05D005666 ORTHO05D007183 1.1e-112 411.8 757 36.7
SMO134G0274 Selaginella moellendorffii HOM05D005666 ORTHO05D007183 1.2e-103 381.7 717 36.5
Pp3c22_6140 Physcomitrium patens HOM05D005666 ORTHO05D007183 8.3e-92 342.4 505 41.6
ATR0762G005 Amborella trichopoda HOM05D005666 ORTHO05D007183 1.7e-89 334.7 335 52.5
THA.LOC109116951 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 2.0e-85 321.2 303 59.1
SEGI_39396 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 7.5e-85 319.3 332 51.2
SHI16418 Sapria himalayana HOM05D005666 ORTHO05D007183 9.5e-72 275.8 293 52.9
ATR0919G001 Amborella trichopoda HOM05D005666 ORTHO05D007183 1.2e-66 258.8 246 54.9
Os01g0682200 Oryza sativa ssp. japonica HOM05D005666 ORTHO05D007183 2.5e-56 224.6 252 46.4
SHI16416 Sapria himalayana HOM05D005666 ORTHO05D007183 9.5e-56 222.6 272 47.1
TPR.G20372 Trifolium pratense HOM05D005666 ORTHO05D007183 7.1e-51 206.5 166 65.1
CBR_g49194 Chara braunii HOM05D005666 ORTHO05D007183 2.1e-42 178.3 433 30.9
THA.LOC104820325 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 1.3e-31 142.5 157 52.9
Oeu030978.1 Olea europaea HOM05D005666 ORTHO05D007183 2.2e-28 131.7 129 54.3
MCO10G117 Micromonas commoda HOM05D005666 ORTHO05D007183 5.5e-27 127.1 498 25.9
A02p05250 Brassica napus HOM05D005666 ORTHO05D007183 1.8e-22 112.1 304 29.3
CiPaw.04G028500 Carya illinoinensis HOM05D005666 ORTHO05D007183 3.8e-20 104.4 64 79.7
Oeu048620.1 Olea europaea HOM05D005666 ORTHO05D007183 6.7e-17 93.6 89 55.1
Thecc.05G064500 Theobroma cacao HOM05D005666 ORTHO05D007183 6.3e-15 87.0 87 50.6
SEGI_03684 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 6.5e-12 77.0 75 58.7
BolC2t06938H Brassica oleracea HOM05D005666 ORTHO05D043081 1.0e-09 69.7 83 44.6
FvH4_6g51172 Fragaria vesca HOM05D005666 ORTHO05D007183 3.7e-07 61.2 65 58.5
Cre03.g201664 Chlamydomonas reinhardtii HOM05D005666 ORTHO05D143906 8.2e-07 60.1 573 23.2


User provided reference genes

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