Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 0.0e+00 1294.3 653 100.0
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 3.3e-281 971.5 644 76.7
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 2.6e-278 961.8 644 73.6
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 3.0e-266 921.8 644 71.9
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 1.1e-263 913.3 645 69.1
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 6.9e-263 910.6 644 70.0
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 9.0e-263 910.2 645 70.4
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 1.0e-261 906.7 645 70.9
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 3.2e-260 901.7 644 69.4
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 3.2e-260 901.7 645 69.0
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 2.3e-258 895.6 644 68.9
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 2.2e-256 889.0 645 66.7
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 4.8e-256 887.9 686 66.3
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 2.0e-254 882.5 644 69.6
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 2.0e-254 882.5 645 69.5
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 1.3e-253 879.8 645 67.6
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 3.6e-251 871.7 645 67.3
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 3.6e-251 871.7 645 66.8
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 1.7e-248 862.8 646 67.6
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.1e-247 860.1 645 67.4
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 4.1e-247 858.2 645 67.4
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 2.7e-243 845.5 644 65.8
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 9.7e-241 837.0 664 65.8
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 1.4e-239 833.2 643 66.4
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 1.4e-239 833.2 643 66.4
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 7.0e-239 830.9 643 65.3
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 7.7e-238 827.4 643 64.9
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 3.6e-235 818.5 646 65.2
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 8.0e-235 817.4 694 62.1
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 1.8e-234 816.2 643 63.9
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 1.8e-234 816.2 645 64.3
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 3.9e-234 815.1 643 63.8
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 1.5e-233 813.1 645 63.9
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 2.6e-233 812.4 647 64.5
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 1.3e-232 810.1 645 63.9
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 2.0e-230 802.7 643 63.5
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 7.7e-230 800.8 646 63.2
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 5.2e-226 788.1 646 61.6
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 2.0e-225 786.2 658 61.6
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 9.7e-225 783.9 644 60.6
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 2.8e-224 782.3 643 62.4
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 2.8e-224 782.3 644 61.0
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 3.7e-224 781.9 644 60.7
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 8.2e-224 780.8 644 61.6
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 2.4e-223 779.2 644 60.6
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 2.4e-223 779.2 648 60.8
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 3.1e-223 778.9 644 60.4
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 1.2e-222 776.9 649 59.3
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 2.7e-222 775.8 644 60.6
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 1.3e-221 773.5 644 60.1
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 3.8e-221 771.9 647 59.2
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 3.8e-221 771.9 645 61.2
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 6.5e-221 771.2 644 60.2
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 5.5e-220 768.1 647 58.7
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 1.6e-219 766.5 647 59.4
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 4.7e-219 765.0 648 61.0
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 8.0e-219 764.2 644 58.9
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.2e-218 761.5 645 59.4
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 8.8e-218 760.8 644 60.7
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 6.3e-216 754.6 645 59.4
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 2.4e-215 752.7 648 59.9
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 4.1e-215 751.9 641 59.1
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 4.1e-215 751.9 641 59.1
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 4.1e-215 751.9 641 59.1
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 7.0e-215 751.1 645 58.6
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 9.1e-215 750.7 645 59.2
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 1.6e-214 750.0 644 58.4
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.3e-213 746.9 645 59.2
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 5.0e-213 745.0 645 58.4
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.3e-212 742.3 643 60.0
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 5.2e-210 734.9 644 58.1
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 2.7e-206 722.6 605 59.2
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 3.3e-204 715.7 532 67.5
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 3.1e-202 709.1 647 55.6
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 1.2e-201 707.2 645 56.6
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 1.1e-199 700.7 507 69.8
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 9.2e-199 697.6 676 56.4
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 1.7e-197 693.3 668 54.2
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 1.5e-196 690.3 476 72.3
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 1.2e-195 687.2 643 55.4
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 7.8e-190 667.9 629 55.2
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 8.9e-186 654.4 639 53.4
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 2.0e-177 626.7 640 50.8
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 3.3e-172 609.4 528 57.0
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 3.6e-171 605.9 647 50.5
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 4.7e-171 605.5 644 50.3
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 6.0e-166 588.6 644 50.8
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.4e-162 577.4 645 49.3
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 9.6e-156 554.7 436 65.6
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.2e-145 521.2 375 70.4
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 3.5e-142 509.6 821 39.1
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 7.7e-137 491.9 563 48.7
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 4.1e-130 469.5 483 54.5
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 3.9e-117 426.4 348 61.8
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.8e-115 419.5 341 63.0
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.0e-113 414.1 338 61.8
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.5e-111 407.9 338 60.9
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.6e-105 387.9 403 50.1
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 9.4e-103 378.6 670 37.6
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.2e-102 378.3 337 58.5
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 2.6e-100 370.5 329 58.1
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.4e-85 321.6 546 39.4
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 1.6e-70 271.6 651 30.0
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.7e-65 254.2 249 50.2
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 1.0e-64 252.3 207 61.4
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.7e-57 227.6 147 73.5
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 6.0e-57 226.5 192 59.4
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 4.0e-45 187.2 120 73.3
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.3e-43 182.2 171 54.4
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.9e-43 180.3 171 53.8
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 6.4e-43 179.9 165 55.2
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 2.7e-41 174.5 185 50.3
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.1e-38 164.9 226 43.8
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.8e-37 161.8 151 57.0
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 2.9e-35 154.5 123 58.5
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 3.7e-30 137.5 172 43.6
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 5.8e-28 130.2 219 36.5
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 1.8e-24 118.6 90 62.2
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 2.5e-23 114.8 434 25.3
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 2.0e-20 105.1 93 54.8
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 1.0e-19 102.8 123 44.7
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.2e-17 95.9 74 63.5
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 1.7e-14 85.5 123 40.7
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 2.0e-12 78.6 52 75.0
FAN06G2394 Fragaria x ananassa HOM05D000021 ORTHO05D000010 4.2e-10 70.9 116 37.9
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 7.2e-10 70.1 51 60.8
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 7.2e-10 70.1 51 60.8
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 3.3e-07 61.2 44 59.1
FAN08G2051 Fragaria x ananassa HOM05D007346 ORTHO05D009044 9.7e-07 59.7 49 51.0


User provided reference genes

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