Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 2.3e-43 178.7 103 100.0
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.6e-28 129.4 90 86.7
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.9e-26 122.5 90 81.1
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 5.6e-26 120.9 90 82.2
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 1.4e-24 116.3 93 77.4
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 4.0e-24 114.8 90 78.9
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 5.2e-24 114.4 90 76.7
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 2.6e-23 112.1 101 68.3
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.4e-23 111.3 90 74.4
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 7.6e-23 110.5 93 78.5
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 2.2e-22 109.0 90 76.7
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.2e-22 109.0 90 76.7
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.9e-22 108.6 84 81.0
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 3.8e-22 108.2 82 82.9
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.4e-22 107.5 90 72.2
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 6.4e-22 107.5 90 73.3
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.1e-21 106.7 93 72.0
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-21 106.3 90 61.1
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.9e-21 105.9 90 72.2
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.4e-21 105.5 90 73.3
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 2.4e-21 105.5 98 73.5
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 3.2e-21 105.1 90 71.1
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 3.2e-21 105.1 90 75.6
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 5.4e-21 104.4 90 72.2
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.7e-20 102.1 88 70.5
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 4.6e-20 101.3 90 74.4
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 7.8e-20 100.5 90 73.3
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.8e-20 100.5 90 63.3
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.3e-19 99.8 90 73.3
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-19 99.4 90 73.3
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 2.3e-19 99.0 93 71.0
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.3e-19 99.0 93 71.0
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.3e-19 99.0 90 62.2
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.3e-19 99.0 90 57.8
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 2.3e-19 99.0 98 69.4
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.0e-19 98.6 93 71.0
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.0e-19 98.6 90 72.2
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.0e-19 98.6 90 72.2
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.0e-19 98.6 90 72.2
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.6e-19 97.4 90 56.7
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 8.7e-19 97.1 98 69.4
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 8.7e-19 97.1 91 57.1
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.9e-18 95.9 90 68.9
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.9e-18 95.9 90 61.1
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.3e-17 93.2 90 71.1
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 6.2e-17 90.9 83 75.9
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.8e-16 89.4 92 69.6
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 3.1e-16 88.6 90 63.3
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 4.0e-16 88.2 90 67.8
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 5.3e-16 87.8 90 66.7
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 6.9e-16 87.4 90 70.0
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.2e-15 86.7 98 64.3
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.5e-15 86.3 90 65.6
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.0e-15 85.9 98 60.2
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 2.0e-15 85.9 90 66.7
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 4.4e-15 84.7 93 65.6
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 4.4e-15 84.7 100 62.0
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 4.4e-15 84.7 90 64.4
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 7.6e-15 84.0 98 63.3
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 7.6e-15 84.0 90 65.6
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 9.9e-15 83.6 90 64.4
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.7e-14 82.8 84 67.9
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 2.2e-14 82.4 90 65.6
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 2.9e-14 82.0 102 62.7
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 4.9e-14 81.3 90 63.3
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 6.4e-14 80.9 91 67.0
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 1.1e-13 80.1 101 58.4
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.9e-13 79.3 100 61.0
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 3.2e-13 78.6 92 62.0
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.2e-13 78.6 85 64.7
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.2e-13 78.2 85 58.8
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 7.1e-13 77.4 98 57.1
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 9.3e-13 77.0 77 70.1
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 9.3e-13 77.0 89 66.3
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.2e-12 76.6 85 64.7
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 2.1e-12 75.9 49 73.5
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.1e-12 75.9 98 59.2
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 2.1e-12 75.9 87 50.6
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.7e-12 75.5 81 65.4
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 4.6e-12 74.7 48 70.8
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 6.0e-12 74.3 90 60.0
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 6.0e-12 74.3 79 55.7
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.0e-11 73.6 82 62.2
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.3e-11 73.2 74 68.9
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.7e-11 72.8 91 61.5
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.7e-11 72.8 82 65.9
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 3.0e-11 72.0 100 56.0
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 3.9e-11 71.6 83 62.7
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 1.1e-10 70.1 83 62.7
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.1e-10 70.1 72 72.2
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.5e-10 69.7 74 66.2
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.9e-10 69.3 74 67.6
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 2.5e-10 68.9 100 56.0
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 4.3e-10 68.2 78 47.4
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 4.3e-10 68.2 87 62.1
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 7.3e-10 67.4 74 67.6
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 9.6e-10 67.0 85 60.0
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.3e-09 66.6 88 56.8
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.6e-09 66.2 87 60.9
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.6e-09 66.2 75 70.7
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.8e-09 65.5 85 58.8
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.8e-09 65.5 90 56.7
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 6.2e-09 64.3 85 56.5
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.1e-08 63.5 79 64.6
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.1e-08 63.5 84 58.3
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.4e-08 62.4 90 54.4
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 6.9e-08 60.8 89 55.1
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.5e-07 59.7 85 56.5
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 4.5e-07 58.2 79 59.5
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.2e-06 55.8 76 57.9
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.2e-06 55.8 90 53.3
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 2.9e-06 55.5 84 57.1
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 2.9e-06 55.5 75 58.7
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 3.8e-06 55.1 85 54.1
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 8.4e-06 53.9 81 50.6
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 8.4e-06 53.9 100 52.0


User provided reference genes

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