Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 5.6e-92 340.9 167 100.0
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 2.2e-88 328.9 165 98.2
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 5.2e-82 307.8 165 89.7
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 1.5e-81 306.2 165 89.7
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.6e-81 305.4 165 89.7
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 3.4e-81 305.1 165 90.3
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 3.4e-81 305.1 165 90.3
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 4.4e-81 304.7 165 89.1
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 4.4e-81 304.7 165 89.1
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 4.4e-81 304.7 165 89.7
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 5.8e-81 304.3 165 90.9
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 9.9e-81 303.5 165 89.1
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 3.8e-80 301.6 165 88.5
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.1e-79 300.1 165 88.5
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 1.1e-79 300.1 165 87.3
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 1.1e-79 300.1 162 89.5
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 1.4e-79 299.7 165 87.9
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 1.4e-79 299.7 165 89.1
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 1.4e-79 299.7 165 86.7
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 1.9e-79 299.3 165 88.5
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 2.4e-79 298.9 165 88.5
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.4e-79 298.9 165 86.1
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.2e-79 298.5 162 87.0
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.4e-79 297.7 165 87.3
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.4e-79 297.7 165 87.3
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-78 296.2 165 86.7
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 2.1e-78 295.8 165 86.1
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 2.1e-78 295.8 165 87.3
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 2.7e-78 295.4 165 86.7
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 2.7e-78 295.4 165 86.1
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 3.5e-78 295.0 162 86.4
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 6.0e-78 294.3 165 86.7
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 7.8e-78 293.9 165 86.7
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 7.8e-78 293.9 165 85.5
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 7.8e-78 293.9 165 85.5
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.3e-77 293.1 165 85.5
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 1.3e-77 293.1 165 85.5
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 3.9e-77 291.6 165 84.2
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 3.9e-77 291.6 165 86.1
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 5.1e-77 291.2 165 84.8
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 5.1e-77 291.2 165 86.1
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 5.1e-77 291.2 165 86.1
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 6.6e-77 290.8 165 85.5
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 8.6e-77 290.4 165 84.2
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 8.6e-77 290.4 165 84.2
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 1.5e-76 289.7 162 84.6
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 1.5e-76 289.7 165 84.2
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.5e-76 289.7 165 84.8
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 1.5e-76 289.7 165 84.8
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 1.5e-76 289.7 182 78.6
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 1.9e-76 289.3 165 84.2
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.9e-76 289.3 165 84.8
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 2.5e-76 288.9 162 84.6
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 4.3e-76 288.1 162 85.8
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.3e-76 288.1 165 84.2
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 5.6e-76 287.7 162 85.8
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 7.3e-76 287.3 165 83.0
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 7.3e-76 287.3 166 84.9
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 9.6e-76 287.0 165 84.2
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.2e-75 286.6 162 84.0
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 1.2e-75 286.6 162 84.0
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 1.6e-75 286.2 162 86.4
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 2.1e-75 285.8 165 84.8
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 2.8e-75 285.4 165 84.8
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 3.6e-75 285.0 165 84.2
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 3.6e-75 285.0 162 85.8
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 4.7e-75 284.6 165 86.1
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 6.2e-75 284.3 162 82.7
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 8.1e-75 283.9 165 85.5
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.1e-74 283.5 165 83.0
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.1e-74 283.5 162 85.2
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 1.4e-74 283.1 165 82.4
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 1.4e-74 283.1 162 82.1
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 1.4e-74 283.1 162 82.1
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 1.4e-74 283.1 162 82.1
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 1.4e-74 283.1 166 84.3
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.8e-74 282.7 165 84.2
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 3.1e-74 282.0 162 82.7
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 4.0e-74 281.6 165 82.4
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 4.0e-74 281.6 165 83.6
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 5.2e-74 281.2 165 81.8
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 5.2e-74 281.2 165 81.2
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 5.2e-74 281.2 165 84.2
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 5.2e-74 281.2 162 82.1
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 9.0e-74 280.4 162 82.1
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 1.2e-73 280.0 162 85.2
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 1.5e-73 279.6 165 84.2
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 2.0e-73 279.3 165 84.2
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 2.6e-73 278.9 162 81.5
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 3.4e-73 278.5 162 82.7
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 3.4e-73 278.5 162 84.0
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 9.9e-73 276.9 162 81.5
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 1.3e-72 276.6 165 83.0
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 1.3e-72 276.6 165 83.6
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 1.7e-72 276.2 165 81.8
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 1.7e-72 276.2 162 82.1
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.2e-72 275.8 162 83.3
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 3.8e-72 275.0 162 83.3
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 6.4e-72 274.2 162 82.7
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 8.4e-72 273.9 165 81.8
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 2.3e-69 265.8 165 78.2
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 2.5e-68 262.3 162 80.9
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 2.5e-68 262.3 162 75.9
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 9.6e-68 260.4 149 84.6
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 9.6e-68 260.4 149 83.9
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 2.1e-67 259.2 165 80.0
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 6.2e-67 257.7 150 83.3
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 3.4e-65 251.9 162 74.7
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 2.2e-64 249.2 175 70.3
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 2.9e-64 248.8 188 69.7
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 2.7e-62 242.3 135 88.9
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 3.5e-62 241.9 165 72.1
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 6.0e-62 241.1 132 88.6
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.0e-61 240.4 134 85.8
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 1.0e-61 240.4 135 85.2
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 5.1e-61 238.0 176 67.6
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 2.6e-57 225.7 162 72.2
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 1.7e-56 223.0 149 68.5
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 6.4e-56 221.1 150 70.7
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.4e-55 219.9 165 66.7
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 5.5e-55 218.0 163 65.6
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.2e-54 216.9 154 69.5
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 2.7e-54 215.7 148 71.6
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 4.6e-54 214.9 165 67.3
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.3e-52 208.8 112 89.3
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.3e-52 208.4 120 82.5
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 5.6e-52 208.0 116 87.9
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 1.3e-51 206.8 162 65.4
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.2e-51 204.5 121 80.2
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.2e-51 204.1 121 80.2
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.2e-51 204.1 121 80.2
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-50 203.8 116 83.6
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 1.8e-50 203.0 131 77.1
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-50 202.2 121 79.3
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-50 202.2 117 82.1
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.9e-50 201.1 117 82.1
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.6e-49 197.6 117 79.5
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.6e-49 197.6 118 79.7
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 3.8e-48 195.3 160 60.6
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 1.2e-46 190.3 112 79.5
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 3.0e-45 185.7 154 59.7
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 1.2e-41 173.7 101 80.2
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 2.0e-41 172.9 101 80.2
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.4e-41 172.2 104 81.7
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 1.0e-40 170.6 147 58.5
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.9e-36 156.4 163 50.3
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 3.1e-34 149.1 106 76.4
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.9e-34 147.9 84 81.0
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.2e-31 138.7 160 53.1
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 1.1e-28 130.6 144 46.5
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 1.1e-23 114.0 64 85.9
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 4.2e-23 112.1 64 84.4
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.1e-20 104.0 74 75.7
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-17 93.6 57 80.7
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 2.6e-17 92.8 62 67.7
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-17 92.4 57 80.7
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 5.5e-15 85.1 61 65.6
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 3.7e-11 72.4 124 41.9
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 3.1e-10 69.3 88 48.9
QL05p086362 Quercus lobata HOM05D003958 ORTHO05D044828 1.6e-06 57.0 46 63.0
QL05p086256 Quercus lobata HOM05D000045 ORTHO05D004773 6.1e-06 55.1 35 74.3


User provided reference genes

Program Settings