Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2155 Acer truncatum HOM05D006555 ORTHO05D008376 1.1e-224 783.1 416 100.0
Ciclev10014254m.g Citrus clementina HOM05D006555 ORTHO05D008376 2.9e-129 466.1 397 68.5
ClCG10G014600 Citrullus lanatus HOM05D006555 ORTHO05D008376 5.1e-126 455.3 396 64.1
CsaV3_3G041990 Cucumis sativus L. HOM05D006555 ORTHO05D008376 1.1e-125 454.1 396 63.6
Haze_14619 Corylus avellana HOM05D006555 ORTHO05D008376 2.8e-124 449.5 423 62.6
TWI56G0535 Tripterygium wilfordii HOM05D006555 ORTHO05D008376 3.5e-119 432.6 396 62.6
Actinidia36057 Actinidia chinensis HOM05D006555 ORTHO05D008376 2.5e-117 426.4 394 63.7
Manes.17G119457 Manihot esculenta HOM05D006555 ORTHO05D008376 2.5e-117 426.4 406 61.3
Cc07_g02700 Coffea canephora HOM05D006555 ORTHO05D008376 1.2e-116 424.1 391 61.1
Eucgr.J01747 Eucalyptus grandis HOM05D006555 ORTHO05D008376 1.2e-116 424.1 404 61.4
CiPaw.03G033500 Carya illinoinensis HOM05D006555 ORTHO05D008376 2.1e-116 423.3 426 59.9
TAR629G0910 Trochodendron aralioides HOM05D006555 ORTHO05D008376 6.2e-116 421.8 333 70.0
RcHm_v2.0_Chr2g0170121 Rosa chinensis HOM05D006555 ORTHO05D008376 6.9e-115 418.3 312 71.5
THA.LOC104800651 Tarenaya hassleriana HOM05D006555 ORTHO05D008376 6.9e-115 418.3 395 62.5
Sed0024496 Sechium edule HOM05D006555 ORTHO05D008376 1.2e-114 417.5 392 60.5
Prupe.3G277100 Prunus persica HOM05D006555 ORTHO05D008376 1.5e-114 417.2 409 59.9
Sp7g02000 Schrenkiella parvula HOM05D006555 ORTHO05D008376 3.8e-113 412.5 400 62.0
PGR142G2543 Punica granatum HOM05D006555 ORTHO05D008376 6.4e-113 411.8 400 60.0
Lsat_1_v5_gn_0_24261 Lactuca sativa HOM05D006555 ORTHO05D008376 8.4e-113 411.4 402 60.2
FAN09G1885 Fragaria x ananassa HOM05D006555 ORTHO05D008376 1.4e-112 410.6 400 62.5
Sed0015102 Sechium edule HOM05D006555 ORTHO05D008376 1.4e-112 410.6 393 59.8
Solyc02g067620.3 Solanum lycopersicum HOM05D006555 ORTHO05D008376 3.2e-112 409.5 396 59.3
FAN02G0929 Fragaria x ananassa HOM05D006555 ORTHO05D008376 7.1e-112 408.3 402 59.7
FvH4_6g49950 Fragaria vesca HOM05D006555 ORTHO05D008376 9.3e-112 407.9 401 62.1
RhsimUnG0168200 Rhododendron simsii HOM05D006555 ORTHO05D008376 6.0e-111 405.2 298 72.1
MD17G1042100 Malus domestica HOM05D006555 ORTHO05D008376 7.8e-111 404.8 359 62.7
Sopen02g016730 Solanum pennellii HOM05D006555 ORTHO05D008376 7.8e-111 404.8 398 59.8
Lalb_Chr04g0258611 Lupinus albus HOM05D006555 ORTHO05D008376 1.0e-110 404.4 400 58.5
PGSC0003DMG400006943 Solanum tuberosum HOM05D006555 ORTHO05D008376 1.0e-110 404.4 399 60.2
Oeu060599.1 Olea europaea HOM05D006555 ORTHO05D008376 3.0e-110 402.9 398 58.5
CAN.G983.4 Capsicum annuum HOM05D006555 ORTHO05D008376 6.6e-110 401.7 403 58.3
CANSAT25G1964 Cannabis sativa HOM05D006555 ORTHO05D008376 1.1e-109 401.0 405 57.5
EL10Ac3g05120 Beta vulgaris HOM05D006555 ORTHO05D008376 7.3e-109 398.3 407 58.2
SGA_v2.0_scaffold135G34829 Striga asiatica HOM05D006555 ORTHO05D008376 1.6e-108 397.1 362 61.9
Thhalv10027647m.g Eutrema salsugineum HOM05D006555 ORTHO05D008376 2.8e-108 396.4 388 61.6
Carub.0003s2623 Capsella rubella HOM05D006555 ORTHO05D008376 5.3e-107 392.1 400 60.2
FAN14G1052 Fragaria x ananassa HOM05D006555 ORTHO05D008376 7.6e-106 388.3 399 59.6
FAN05G5565 Fragaria x ananassa HOM05D006555 ORTHO05D008376 9.9e-106 387.9 354 64.1
AT2G04620 Arabidopsis thaliana HOM05D006555 ORTHO05D008376 1.7e-105 387.1 406 59.9
Duzib147G0944 Durio zibethinus HOM05D006555 ORTHO05D008376 6.4e-105 385.2 397 59.9
PSO013G0385 Papaver somniferum HOM05D006555 ORTHO05D008376 1.4e-104 384.0 314 66.2
HanXRQChr15g0474321 Helianthus annuus HOM05D006555 ORTHO05D008376 1.9e-104 383.6 400 57.8
SalBow1G4248 Salvia bowleyana HOM05D006555 ORTHO05D008376 7.1e-104 381.7 396 56.6
Ah.01g015770 Amaranthus hybridus HOM05D006555 ORTHO05D008376 1.6e-103 380.6 407 57.7
Potri.005G110300 Populus trichocarpa HOM05D006555 ORTHO05D008376 2.1e-103 380.2 340 63.8
PSO832G4179 Papaver somniferum HOM05D006555 ORTHO05D008376 7.9e-103 378.3 400 55.8
QL02p078549 Quercus lobata HOM05D006555 ORTHO05D008376 5.1e-102 375.6 311 66.9
Sc20g0004830 Simmondsia chinensis HOM05D006555 ORTHO05D008376 1.1e-101 374.4 394 56.3
Thecc.04G067100 Theobroma cacao HOM05D006555 ORTHO05D008376 3.3e-101 372.9 407 58.0
Migut.H00171 Erythranthe guttata HOM05D006555 ORTHO05D008376 2.1e-100 370.2 394 54.6
BcaB06g27415 Brassica carinata HOM05D006555 ORTHO05D008376 2.4e-99 366.7 395 58.7
Duzib187G0608 Durio zibethinus HOM05D006555 ORTHO05D008376 1.5e-98 364.0 408 57.4
C04p46570 Brassica napus HOM05D006555 ORTHO05D008376 2.6e-98 363.2 393 57.8
BolC4t26243H Brassica oleracea HOM05D006555 ORTHO05D008376 5.8e-98 362.1 393 57.8
CARHR102570 Cardamine hirsuta HOM05D006555 ORTHO05D008376 1.7e-97 360.5 398 56.0
MSTRG.3197 Avicennia marina HOM05D006555 ORTHO05D008376 3.8e-97 359.4 394 53.8
A04p12870 Brassica napus HOM05D006555 ORTHO05D008376 6.4e-97 358.6 394 58.1
MELO3C009917.2 Cucumis melo HOM05D006555 ORTHO05D008376 8.4e-97 358.2 248 70.2
BraA04t16950Z Brassica rapa HOM05D006555 ORTHO05D008376 4.2e-96 355.9 394 58.1
arahy.Tifrunner.gnm1.ann1.LDE0EK Arachis hypogaea HOM05D006555 ORTHO05D008376 5.5e-96 355.5 411 52.8
Aqoxy3G03121 Aquilegia oxysepala HOM05D006555 ORTHO05D008376 1.0e-94 351.3 414 54.3
Hma1.2p1_0697F.1_g205130 Hydrangea macrophylla HOM05D006555 ORTHO05D008376 3.9e-94 349.4 254 70.9
TAR371G0356 Trochodendron aralioides HOM05D006555 ORTHO05D008376 1.9e-93 347.1 252 71.4
Sabra05G0090500 Salix brachista HOM05D006555 ORTHO05D008376 9.0e-91 338.2 400 53.0
Cfa007479 Carpinus fangiana HOM05D006555 ORTHO05D008376 9.3e-88 328.2 238 71.0
Lj2g0012787 Lotus japonicus HOM05D006555 ORTHO05D008376 9.3e-88 328.2 397 53.9
Gorai.001G258800 Gossypium raimondii HOM05D006555 ORTHO05D008376 2.1e-87 327.0 398 51.8
Medtr6g463330 Medicago truncatula HOM05D006555 ORTHO05D008376 3.5e-87 326.2 397 53.1
AUR62028128 Chenopodium quinoa HOM05D006555 ORTHO05D008376 7.9e-87 325.1 408 50.0
TPR.G27718 Trifolium pratense HOM05D006555 ORTHO05D008376 6.7e-86 322.0 406 52.0
VMungo0251G3141 Vigna mungo HOM05D006555 ORTHO05D008376 8.7e-86 321.6 391 53.7
Gohir.D07G224400 Gossypium hirsutum HOM05D006555 ORTHO05D008376 1.1e-85 321.2 398 51.3
unitig_746.g26576 Utricularia gibba HOM05D006555 ORTHO05D008376 9.6e-85 318.2 389 50.1
Psat1g109920 Pisum sativum HOM05D006555 ORTHO05D008376 1.3e-84 317.8 402 50.7
Phvul.002G176300 Phaseolus vulgaris HOM05D006555 ORTHO05D008376 4.8e-84 315.8 404 51.7
Dinv35011 Davidia involucrata HOM05D006555 ORTHO05D008376 1.4e-83 314.3 214 73.4
Glyma.08G102000 Glycine max HOM05D006555 ORTHO05D008376 7.6e-82 308.5 390 51.8
Lj7P407T43 Lonicera japonica HOM05D006555 ORTHO05D008376 2.1e-79 300.4 214 70.1
MBI14_g15702_MAGBIO Magnolia biondii HOM05D006555 ORTHO05D008376 7.9e-79 298.5 400 49.0
Nitab4.5_0001727g0060 Nicotiana tabacum HOM05D006555 ORTHO05D008376 4.5e-74 282.7 217 61.3
GSVIVG01032551001 Vitis vinifera HOM05D006555 ORTHO05D008376 1.4e-70 271.2 165 77.6
AUR62005932 Chenopodium quinoa HOM05D006555 ORTHO05D008376 1.1e-69 268.1 248 57.7
AUR62005935 Chenopodium quinoa HOM05D006555 ORTHO05D008376 1.1e-69 268.1 248 57.7
ECA246G4860 Erigeron canadensis HOM05D006555 ORTHO05D008376 2.2e-68 263.8 214 62.6
AL3G42250 Arabidopsis lyrata HOM05D006555 ORTHO05D008376 8.2e-68 261.9 218 64.2
DCAR_011190 Daucus carota HOM05D006555 ORTHO05D008376 4.2e-64 249.6 226 54.9
COL.COLO4_34871 Corchorus olitorius HOM05D006555 ORTHO05D008376 1.8e-59 234.2 228 58.8
Ca_19526_v3 Cicer arietinum L. HOM05D006555 ORTHO05D008376 1.0e-54 218.4 216 55.1
Nn4g22926 Nelumbo nucifera HOM05D006555 ORTHO05D008376 2.3e-54 217.2 154 66.9
CDE06G1454 Ceratophyllum demersum HOM05D006555 ORTHO05D008376 1.2e-39 168.3 142 60.6
Nitab4.5_0003431g0010 Nicotiana tabacum HOM05D006555 ORTHO05D008376 3.1e-35 153.7 106 67.0
Aa31LG9G1580 Aethionema arabicum HOM05D006555 ORTHO05D008376 1.6e-31 141.4 114 64.9
Peaxi162Scf00368g00061 Petunia axillaris HOM05D006555 ORTHO05D008376 2.8e-31 140.6 109 59.6
CDE04G3747 Ceratophyllum demersum HOM05D006555 ORTHO05D008376 3.0e-30 137.1 124 57.3
HPP92_002867 Vanilla planifolia HOM05D006555 ORTHO05D008376 1.3e-28 131.7 136 55.9
Gohir.A07G217400 Gossypium hirsutum HOM05D006555 ORTHO05D008376 1.9e-24 117.9 91 67.0
ATR0712G064 Amborella trichopoda HOM05D006555 ORTHO05D008376 6.2e-15 86.3 294 30.3
Zm00001eb041980 Zea mays HOM05D006555 ORTHO05D008376 3.7e-12 77.0 367 30.5
HPP92_002811 Vanilla planifolia HOM05D006555 ORTHO05D008376 2.7e-10 70.9 66 59.1
AL3G46790 Arabidopsis lyrata HOM05D006555 ORTHO05D008376 6.0e-10 69.7 43 79.1
Zm00001eb179160 Zea mays HOM05D006555 ORTHO05D008376 8.6e-09 65.9 368 28.5
Zm00001eb156340 Zea mays HOM05D006225 ORTHO05D007676 2.8e-07 60.8 213 25.8
SEGI_26593 Sequoiadendron giganteum HOM05D006555 ORTHO05D008376 5.2e-06 56.6 136 31.6
FvH4_3g13342 Fragaria vesca HOM05D006555 ORTHO05D008376 8.9e-06 55.8 134 43.3


User provided reference genes

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