Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2125 Acer truncatum HOM05D007551 ORTHO05D009424 7.9e-136 488.8 250 100.0
Ciclev10000274m.g Citrus clementina HOM05D007551 ORTHO05D009424 1.3e-93 348.6 231 75.8
Prupe.3G018200 Prunus persica HOM05D007551 ORTHO05D009424 1.2e-83 315.5 231 67.5
FAN13G0867 Fragaria x ananassa HOM05D007551 ORTHO05D009424 8.6e-82 309.3 231 64.5
FvH4_5g24430 Fragaria vesca HOM05D007551 ORTHO05D009424 1.1e-81 308.9 231 64.5
CiPaw.12G053700 Carya illinoinensis HOM05D007551 ORTHO05D009424 6.8e-79 299.7 224 65.2
Dinv37453 Davidia involucrata HOM05D007551 ORTHO05D009424 6.4e-77 293.1 231 62.8
QL11p054679 Quercus lobata HOM05D007551 ORTHO05D009424 6.4e-77 293.1 236 63.1
Cfa012637 Carpinus fangiana HOM05D007551 ORTHO05D009424 8.4e-77 292.7 230 63.5
RcHm_v2.0_Chr7g0214821 Rosa chinensis HOM05D007551 ORTHO05D009424 9.2e-76 289.3 231 61.0
MD06G1022200 Malus domestica HOM05D007551 ORTHO05D009424 1.6e-75 288.5 232 63.4
Rhsim04G0146500 Rhododendron simsii HOM05D007551 ORTHO05D009424 1.5e-73 282.0 231 61.9
TWI60G1073 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 1.9e-73 281.6 230 63.9
TWI34G0706 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 3.3e-73 280.8 231 64.9
Hma1.2p1_0294F.1_g116420 Hydrangea macrophylla HOM05D007551 ORTHO05D009424 8.1e-72 276.2 231 60.6
GSVIVG01036918001 Vitis vinifera HOM05D007551 ORTHO05D009424 4.0e-71 273.9 227 61.7
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 3.2e-68 264.2 236 59.3
TAR633G1897 Trochodendron aralioides HOM05D007551 ORTHO05D009424 3.2e-68 264.2 232 58.6
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 7.1e-68 263.1 206 62.6
Sc07g0008330 Simmondsia chinensis HOM05D007551 ORTHO05D009424 1.0e-66 259.2 227 56.8
FvH4_4g10440 Fragaria vesca HOM05D007551 ORTHO05D009424 1.6e-64 251.9 235 54.9
Potri.003G105700 Populus trichocarpa HOM05D007551 ORTHO05D009424 2.8e-64 251.1 198 63.6
RcHm_v2.0_Chr4g0405931 Rosa chinensis HOM05D007551 ORTHO05D009424 3.6e-64 250.8 235 55.3
FvH4_4g10410 Fragaria vesca HOM05D007551 ORTHO05D009424 6.2e-64 250.0 235 54.5
PGR042G1889 Punica granatum HOM05D007551 ORTHO05D009424 1.4e-63 248.8 230 55.2
Thecc.03G322800 Theobroma cacao HOM05D007551 ORTHO05D009424 1.8e-63 248.4 230 56.5
ClCG07G011220 Citrullus lanatus HOM05D007551 ORTHO05D009424 4.0e-63 247.3 229 56.3
Sed0007434 Sechium edule HOM05D007551 ORTHO05D009424 9.0e-63 246.1 230 57.4
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 1.5e-62 245.4 233 54.9
Manes.17G006200 Manihot esculenta HOM05D007551 ORTHO05D009424 1.5e-62 245.4 192 65.1
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 2.0e-62 245.0 230 57.4
MELO3C016242.2 Cucumis melo HOM05D007551 ORTHO05D009424 2.2e-61 241.5 224 56.7
Sed0011000 Sechium edule HOM05D007551 ORTHO05D009424 2.9e-61 241.1 228 54.8
Thhalv10024401m.g Eutrema salsugineum HOM05D007551 ORTHO05D009424 3.8e-61 240.7 246 53.3
EL10Ac5g11872 Beta vulgaris HOM05D007551 ORTHO05D009424 6.4e-61 240.0 227 54.6
Nn1g00676 Nelumbo nucifera HOM05D007551 ORTHO05D009424 1.1e-60 239.2 230 54.8
Peaxi162Scf00619g00022 Petunia axillaris HOM05D007551 ORTHO05D009424 1.1e-60 239.2 260 50.0
VMungo0251G2062 Vigna mungo HOM05D007551 ORTHO05D009424 3.2e-60 237.7 233 54.5
Ah.12g056170 Amaranthus hybridus HOM05D000351 ORTHO05D009424 1.2e-59 235.7 234 54.7
AL7G34670 Arabidopsis lyrata HOM05D007551 ORTHO05D009424 1.2e-59 235.7 232 55.6
CsaV3_4G007030 Cucumis sativus L. HOM05D007551 ORTHO05D009424 1.2e-59 235.7 224 54.5
RcHm_v2.0_Chr7g0219861 Rosa chinensis HOM05D007551 ORTHO05D009424 1.2e-59 235.7 203 59.1
Sabra03G0072700 Salix brachista HOM05D007551 ORTHO05D009424 1.2e-59 235.7 191 63.9
Aa31LG6G2050 Aethionema arabicum HOM05D007551 ORTHO05D009424 2.1e-59 235.0 243 51.9
AT4G19440 Arabidopsis thaliana HOM05D007551 ORTHO05D009424 2.1e-59 235.0 230 56.5
Lsat_1_v5_gn_6_75081 Lactuca sativa HOM05D007551 ORTHO05D009424 2.7e-59 234.6 239 50.6
Carub.0007s2177 Capsella rubella HOM05D007551 ORTHO05D009424 1.8e-58 231.9 232 56.0
Lalb_Chr09g0334421 Lupinus albus HOM05D007551 ORTHO05D009424 3.9e-58 230.7 231 52.8
BcaB03g11619 Brassica carinata HOM05D007551 ORTHO05D009424 5.1e-58 230.3 236 55.5
CAN.G652.9 Capsicum annuum HOM05D007551 ORTHO05D009424 5.1e-58 230.3 246 50.4
Sp7g18060 Schrenkiella parvula HOM05D007551 ORTHO05D009424 8.7e-58 229.6 242 52.9
Gorai.N026600 Gossypium raimondii HOM05D007551 ORTHO05D009424 1.1e-57 229.2 232 53.0
PGSC0003DMG402028683 Solanum tuberosum HOM05D007551 ORTHO05D009424 2.5e-57 228.0 229 53.3
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 3.3e-57 227.6 232 52.6
Solyc11g005940.3 Solanum lycopersicum HOM05D007551 ORTHO05D009424 3.3e-57 227.6 229 52.4
Sopen11g001880 Solanum pennellii HOM05D007551 ORTHO05D009424 4.3e-57 227.3 242 50.0
Eucgr.E01036 Eucalyptus grandis HOM05D007551 ORTHO05D009424 9.6e-57 226.1 243 52.3
Nitab4.5_0002667g0100 Nicotiana tabacum HOM05D007551 ORTHO05D009424 1.6e-56 225.3 229 51.1
Nitab4.5_0000856g0020 Nicotiana tabacum HOM05D007551 ORTHO05D009424 1.4e-55 222.2 229 50.7
Lj4g0019089 Lotus japonicus HOM05D007551 ORTHO05D009424 6.9e-55 219.9 221 55.7
Gohir.D12G203200 Gossypium hirsutum HOM05D007551 ORTHO05D009424 9.0e-55 219.5 232 51.3
Phvul.003G277400 Phaseolus vulgaris HOM05D007551 ORTHO05D009424 1.3e-53 215.7 233 51.5
Oeu040609.1 Olea europaea HOM05D007551 ORTHO05D009424 1.7e-53 215.3 226 50.4
Oeu029773.2 Olea europaea HOM05D007551 ORTHO05D009424 2.2e-53 214.9 231 50.2
Cc00_g20060 Coffea canephora HOM05D007551 ORTHO05D009424 2.7e-51 208.0 237 47.3
Glyma.16G058700 Glycine max HOM05D007551 ORTHO05D009424 6.0e-51 206.8 230 48.7
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 6.0e-51 206.8 229 48.5
ECA240G1023 Erigeron canadensis HOM05D000046 ORTHO05D000457 8.2e-48 196.4 202 51.5
Migut.E01387 Erythranthe guttata HOM05D007551 ORTHO05D009424 1.8e-47 195.3 224 45.1
MSTRG.1750 Avicennia marina HOM05D007551 ORTHO05D009424 2.4e-47 194.9 236 44.1
Cpa.g.c44844 Carica papaya HOM05D007551 ORTHO05D009424 2.4e-47 194.9 165 61.8
SalBow1G3247 Salvia bowleyana HOM05D007551 ORTHO05D009424 2.4e-47 194.9 225 44.9
SalBow8G4006 Salvia bowleyana HOM05D007551 ORTHO05D009424 2.4e-47 194.9 225 44.9
PSO210G4217 Papaver somniferum HOM05D007551 ORTHO05D009424 3.1e-47 194.5 238 45.0
SGA_v2.0_scaffold121G33050 Striga asiatica HOM05D007551 ORTHO05D009424 4.0e-47 194.1 227 45.8
PSO210G5788 Papaver somniferum HOM05D007551 ORTHO05D009424 6.9e-47 193.4 238 45.8
FAN04G0939 Fragaria x ananassa HOM05D007551 ORTHO05D009424 1.2e-46 192.6 231 44.2
AUR62044750 Chenopodium quinoa HOM05D007551 ORTHO05D009424 1.4e-44 185.7 170 57.6
CSS0048505 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 6.3e-40 170.2 134 63.4
CSS0008559 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 1.8e-39 168.7 134 62.7
Medtr8g071970 Medicago truncatula HOM05D007551 ORTHO05D009424 9.0e-39 166.4 203 48.3
Aqoxy2G03897 Aquilegia oxysepala HOM05D007551 ORTHO05D009424 3.4e-38 164.5 177 48.6
Cpa.g.sc3.432 Carica papaya HOM05D007551 ORTHO05D009424 2.9e-37 161.4 121 63.6
TPR.G16813 Trifolium pratense HOM05D007551 ORTHO05D009424 2.9e-37 161.4 203 47.3
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 3.8e-37 161.0 194 47.9
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 7.2e-36 156.8 194 46.4
Psat4g109680 Pisum sativum HOM05D007551 ORTHO05D009424 1.6e-35 155.6 185 49.7
Lalb_Chr05g0229381 Lupinus albus HOM05D007551 ORTHO05D009424 1.2e-30 139.4 145 52.4
Lj8C372G5 Lonicera japonica HOM05D007551 ORTHO05D009424 2.0e-30 138.7 113 58.4
CARHR226230 Cardamine hirsuta HOM05D007551 ORTHO05D009424 2.6e-30 138.3 214 42.5
Oeu044967.1 Olea europaea HOM05D007551 ORTHO05D009424 1.8e-26 125.6 129 48.1
HPP92_013860 Vanilla planifolia HOM05D007551 ORTHO05D009424 1.7e-24 119.0 230 35.2
MD16G1287400 Malus domestica HOM05D007551 ORTHO05D009424 3.8e-21 107.8 70 68.6
ATR0626G221 Amborella trichopoda HOM05D007551 ORTHO05D009424 5.2e-18 97.4 182 37.9
SEGI_02979 Sequoiadendron giganteum HOM05D007551 ORTHO05D006600 9.1e-15 86.7 226 29.6
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 4.5e-14 84.3 190 31.6
FAN17G3133 Fragaria x ananassa HOM05D007551 ORTHO05D009424 1.1e-12 79.7 117 35.9
SalBow8G0178 Salvia bowleyana HOM05D007551 ORTHO05D009424 2.5e-12 78.6 72 50.0
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 3.2e-12 78.2 193 30.6
Ca_22472_v3 Cicer arietinum L. HOM05D007551 ORTHO05D009424 4.2e-12 77.8 97 46.4
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 1.6e-11 75.9 185 28.6
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 8.0e-11 73.6 190 30.0
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.4e-10 72.8 193 30.6
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 3.0e-10 71.6 189 31.7
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 4.0e-10 71.2 189 29.6
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 8.8e-10 70.1 236 28.0
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.5e-09 69.3 236 27.5
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 3.3e-09 68.2 238 26.1
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 4.4e-09 67.8 205 29.8
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 5.7e-09 67.4 194 29.4
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 9.7e-09 66.6 236 27.1
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.2e-08 65.5 183 27.9
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 3.7e-08 64.7 250 28.8
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 3.7e-08 64.7 185 25.9
HPP92_013845 Vanilla planifolia HOM05D007551 ORTHO05D009424 3.7e-08 64.7 96 37.5
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 4.8e-08 64.3 250 28.8
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 4.8e-08 64.3 197 26.9
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 6.3e-08 63.9 204 31.4
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 8.2e-08 63.5 204 31.4
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 8.2e-08 63.5 185 25.9
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 1.1e-07 63.2 202 23.3
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 1.1e-07 63.2 182 29.7
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 1.8e-07 62.4 185 27.6
VMungo0464G1987 Vigna mungo HOM05D007358 ORTHO05D009117 1.8e-07 62.4 238 24.8
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 2.4e-07 62.0 169 30.8
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 3.1e-07 61.6 185 25.4
Manes.01G179100 Manihot esculenta HOM05D007455 ORTHO05D009431 5.3e-07 60.8 153 33.3
Potri.001G276500 Populus trichocarpa HOM05D007455 ORTHO05D009431 7.0e-07 60.5 168 31.0
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 9.1e-07 60.1 246 28.0
Manes.01G179300 Manihot esculenta HOM05D007455 ORTHO05D009431 9.1e-07 60.1 163 31.3
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 1.6e-06 59.3 191 29.8
Nitab4.5_0002347g0140 Nicotiana tabacum HOM05D007956 ORTHO05D010152 1.6e-06 59.3 222 27.0
CDE09G0292 Ceratophyllum demersum HOM05D007212 ORTHO05D009094 2.0e-06 58.9 183 26.8
DCAR_012172 Daucus carota HOM05D007893 ORTHO05D010042 2.0e-06 58.9 70 41.4
PGSC0003DMG400002071 Solanum tuberosum HOM05D007956 ORTHO05D010152 2.0e-06 58.9 230 27.8
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 2.0e-06 58.9 184 27.2
CAN.G569.38 Capsicum annuum HOM05D007956 ORTHO05D010152 2.7e-06 58.5 194 25.3
PGR119G1668 Punica granatum HOM05D000424 ORTHO05D008586 2.7e-06 58.5 88 34.1
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 3.5e-06 58.2 200 28.5
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.5e-06 58.2 95 32.6
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.5e-06 58.2 95 32.6
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.5e-06 58.2 95 32.6
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.5e-06 58.2 95 32.6
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.5e-06 58.2 95 32.6
HPP92_001923 Vanilla planifolia HOM05D007455 ORTHO05D009431 3.5e-06 58.2 181 29.3
Peaxi162Scf01229g00021 Petunia axillaris HOM05D007455 ORTHO05D009431 4.5e-06 57.8 87 39.1
ATR0580G451 Amborella trichopoda HOM05D007212 ORTHO05D009094 5.9e-06 57.4 184 29.3
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 5.9e-06 57.4 102 27.5
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 5.9e-06 57.4 236 24.6
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 5.9e-06 57.4 83 38.6
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 5.9e-06 57.4 188 28.2
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 5.9e-06 57.4 205 26.8
TPR.G8243 Trifolium pratense HOM05D007291 ORTHO05D009038 5.9e-06 57.4 219 26.5
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 7.7e-06 57.0 196 26.0
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 7.7e-06 57.0 196 25.5
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 7.7e-06 57.0 86 39.5
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 7.7e-06 57.0 86 39.5
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 7.7e-06 57.0 233 24.5
Prupe.7G165800 Prunus persica HOM05D006888 ORTHO05D008371 7.7e-06 57.0 227 28.2
Solyc02g080170.1 Solanum lycopersicum HOM05D007956 ORTHO05D010152 7.7e-06 57.0 203 26.6


User provided reference genes

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