Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1385.2 715 100.0
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1241.1 713 89.2
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1237.6 710 88.9
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1231.1 707 89.7
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1223.4 709 88.6
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1218.0 713 87.4
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1217.2 707 87.7
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1216.4 709 88.0
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1216.4 709 88.0
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1216.1 713 86.5
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1214.9 709 88.3
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1214.5 709 88.0
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1214.5 707 88.4
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1213.7 709 87.4
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1210.3 713 87.1
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1209.5 713 86.5
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1209.1 713 86.8
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1208.0 710 87.9
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1207.6 731 85.4
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1205.7 706 88.2
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1203.7 707 86.7
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1203.3 707 87.1
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1201.4 711 85.5
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1200.7 711 86.1
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1200.7 708 88.0
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1200.3 709 86.2
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1198.7 712 87.1
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1197.6 711 86.4
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1196.4 713 85.7
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1194.9 709 85.9
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1192.9 711 84.7
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1191.8 703 87.1
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1191.4 704 86.8
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1188.3 699 87.1
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1180.2 711 85.1
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1179.9 708 85.6
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1178.7 709 85.5
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1176.0 705 84.3
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1176.0 709 85.9
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1174.8 705 85.1
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1171.0 707 84.6
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1170.2 706 85.8
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1167.9 700 85.3
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1167.1 707 84.6
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1165.6 711 83.0
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1164.8 706 85.0
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1164.1 714 84.0
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1164.1 714 84.0
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1162.5 707 84.0
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1160.6 695 85.9
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1153.7 707 84.9
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1151.0 712 84.4
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1150.6 700 84.1
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1150.6 712 84.1
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1146.0 706 83.3
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1144.4 709 82.4
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1141.7 709 84.5
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1134.4 709 83.8
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1132.5 703 80.8
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1129.0 703 80.5
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1123.2 700 81.7
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1122.1 685 85.4
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1114.0 703 79.9
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1110.5 703 82.6
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1106.3 738 79.4
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1104.7 706 79.9
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1103.6 704 80.4
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1103.6 703 79.7
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1100.5 706 80.3
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 0.0e+00 1100.5 662 85.3
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1100.1 706 80.2
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1099.0 727 80.5
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1097.4 707 79.1
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1097.0 706 80.3
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1097.0 706 80.0
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1097.0 706 80.0
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1095.9 706 79.7
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1095.1 715 78.2
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1092.0 715 77.9
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1090.1 704 78.7
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1090.1 704 78.1
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1090.1 709 78.3
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1085.9 715 77.8
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1085.9 715 77.8
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1085.9 715 77.8
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1083.9 707 79.2
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1082.0 706 81.0
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 0.0e+00 1076.6 709 77.0
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 0.0e+00 1075.5 624 88.0
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 4.9e-312 1074.3 715 76.5
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.2e-310 1068.5 623 86.7
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 8.2e-310 1066.6 699 81.0
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 4.5e-308 1060.8 701 77.2
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 9.8e-303 1043.1 706 75.8
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 6.3e-302 1040.4 664 79.7
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 2.4e-301 1038.5 694 76.2
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 2.7e-300 1035.0 704 78.6
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 3.5e-300 1034.6 710 75.4
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 1.3e-299 1032.7 664 80.7
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 6.3e-294 1013.8 688 74.4
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.4e-293 1012.7 702 74.2
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 2.6e-287 991.9 591 86.5
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.2e-286 988.8 702 73.1
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 8.3e-286 986.9 705 73.9
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 5.4e-285 984.2 651 76.0
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.6e-283 977.2 736 72.8
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.3e-282 974.9 566 89.2
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.4e-277 959.5 546 90.1
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 2.6e-263 912.1 702 71.4
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 5.8e-263 911.0 734 68.4
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 3.3e-250 868.6 702 66.4
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 6.7e-243 844.3 519 82.3
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.4e-239 832.0 567 75.0
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.5e-237 824.7 543 79.2
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 5.1e-227 791.6 457 90.2
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 1.4e-205 720.3 698 55.0
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 4.2e-205 718.8 615 64.7
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 4.7e-196 688.7 632 56.6
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.0e-195 686.0 561 69.2
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 9.7e-194 681.0 409 86.1
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.0e-192 674.9 399 87.0
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 7.5e-178 628.2 517 66.5
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.8e-172 609.8 642 49.8
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 3.1e-163 579.7 643 48.2
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 5.2e-163 578.9 644 48.0
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.7e-156 555.8 404 74.8
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.0e-142 510.0 643 43.4
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 9.6e-141 505.0 713 45.0
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.7e-137 494.2 634 43.4
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.3e-133 479.9 641 42.4
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 6.9e-131 472.2 304 77.6
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.8e-129 466.5 629 42.9
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.3e-108 396.0 399 59.4
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.5e-106 391.3 404 52.5
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.9e-104 384.4 254 78.7
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 2.0e-85 321.2 218 70.2
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 6.1e-71 273.1 231 66.2
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.7e-60 237.3 133 86.5
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.8e-58 229.6 171 73.7
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.2e-35 154.5 132 55.3
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-31 142.5 82 85.4
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 2.2e-28 131.7 101 65.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 6.6e-25 120.2 63 84.1
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 2.8e-23 114.8 99 59.6
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 3.6e-23 114.4 59 86.4
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 7.3e-16 90.1 56 76.8
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 4.5e-13 80.9 58 69.0
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 4.5e-13 80.9 58 69.0
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 1.3e-12 79.3 55 76.4
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 8.4e-12 76.6 55 74.5
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 1.1e-11 76.3 61 65.6
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 3.1e-06 58.2 30 73.3


User provided reference genes

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