Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2081 Acer truncatum HOM05D003390 ORTHO05D018142 3.2e-141 505.0 237 100.0
Ciclev10031790m.g Citrus clementina HOM05D003390 ORTHO05D004189 2.2e-78 296.2 232 63.8
QL08p044424 Quercus lobata HOM05D003390 ORTHO05D004189 8.8e-75 284.3 241 61.0
COL.COLO4_08451 Corchorus olitorius HOM05D003390 ORTHO05D004189 1.1e-72 277.3 248 58.5
TAR627G0573 Trochodendron aralioides HOM05D003390 ORTHO05D004189 2.2e-70 269.6 251 59.4
TAR386G0005 Trochodendron aralioides HOM05D003390 ORTHO05D004189 3.8e-70 268.9 252 59.1
Solyc10g007740.3 Solanum lycopersicum HOM05D003390 ORTHO05D004189 8.5e-70 267.7 240 57.1
Sopen10g003650 Solanum pennellii HOM05D003390 ORTHO05D004189 1.9e-69 266.5 240 56.7
Nitab4.5_0002209g0030 Nicotiana tabacum HOM05D003390 ORTHO05D004189 2.5e-69 266.2 243 56.4
Nitab4.5_0003104g0070 Nicotiana tabacum HOM05D003390 ORTHO05D004189 1.6e-68 263.5 240 57.9
CAN.G2018.1 Capsicum annuum HOM05D003390 ORTHO05D004189 1.8e-67 260.0 246 56.1
Thecc.01G163000 Theobroma cacao HOM05D003390 ORTHO05D004189 2.3e-67 259.6 242 58.7
Rhsim06G0115300 Rhododendron simsii HOM05D003390 ORTHO05D004189 8.8e-67 257.7 240 57.5
PGSC0003DMG400021242 Solanum tuberosum HOM05D003390 ORTHO05D004189 8.8e-67 257.7 242 56.2
Aqoxy1G01824 Aquilegia oxysepala HOM05D003390 ORTHO05D004189 4.4e-66 255.4 243 55.1
Gohir.A09G007100 Gossypium hirsutum HOM05D003390 ORTHO05D004189 9.7e-66 254.2 233 57.1
Haze_13511 Corylus avellana HOM05D003390 ORTHO05D004189 1.3e-65 253.8 255 51.8
Peaxi162Scf00035g02617 Petunia axillaris HOM05D003390 ORTHO05D004189 1.3e-65 253.8 243 54.7
Gohir.D09G006300 Gossypium hirsutum HOM05D003390 ORTHO05D004189 1.7e-65 253.4 235 56.6
Prupe.3G173900 Prunus persica HOM05D003390 ORTHO05D004189 2.2e-65 253.1 231 56.3
Gorai.006G007900 Gossypium raimondii HOM05D003390 ORTHO05D004189 4.8e-65 251.9 235 56.2
Oeu020929.2 Olea europaea HOM05D003390 ORTHO05D004189 6.3e-65 251.5 238 55.0
Nn4g26479 Nelumbo nucifera HOM05D003390 ORTHO05D004189 1.1e-64 250.8 246 53.3
vmacro12466 Vaccinium macrocarpon HOM05D003390 ORTHO05D004189 1.4e-64 250.4 252 54.8
Cc05_g09550 Coffea canephora HOM05D003390 ORTHO05D004189 7.0e-64 248.1 240 55.0
FAN16G0009 Fragaria x ananassa HOM05D003390 ORTHO05D004189 7.0e-64 248.1 234 55.6
FAN21G1255 Fragaria x ananassa HOM05D003390 ORTHO05D004189 5.9e-63 245.0 234 55.1
Prupe.4G074800 Prunus persica HOM05D003390 ORTHO05D004189 7.7e-63 244.6 232 54.7
FAN25G2602 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.0e-62 244.2 234 54.3
Lj2A310T45 Lonicera japonica HOM05D003390 ORTHO05D004189 1.0e-62 244.2 232 55.2
Peaxi162Scf00121g00231 Petunia axillaris HOM05D003390 ORTHO05D004189 3.8e-62 242.3 241 53.9
Thecc.06G156600 Theobroma cacao HOM05D003390 ORTHO05D004189 5.0e-62 241.9 247 53.8
FvH4_3g06290 Fragaria vesca HOM05D003390 ORTHO05D004189 6.5e-62 241.5 234 54.3
SalBow8G0013 Salvia bowleyana HOM05D003390 ORTHO05D002303 6.5e-62 241.5 243 53.5
DCAR_005073 Daucus carota HOM05D003390 ORTHO05D004189 1.5e-61 240.4 254 52.0
TAR626G0692 Trochodendron aralioides HOM05D003390 ORTHO05D004189 1.5e-61 240.4 241 53.9
SGA_v2.0_scaffold333G49014 Striga asiatica HOM05D003390 ORTHO05D004189 2.5e-61 239.6 230 53.9
FAN11G2053 Fragaria x ananassa HOM05D003390 ORTHO05D004189 3.2e-61 239.2 234 53.0
SalBow7G4851 Salvia bowleyana HOM05D003390 ORTHO05D004189 3.2e-61 239.2 235 55.3
PSO135G0210 Papaver somniferum HOM05D003390 ORTHO05D004189 4.2e-61 238.8 227 51.5
MD05G1290900 Malus domestica HOM05D003390 ORTHO05D004189 5.5e-61 238.4 224 54.9
Migut.M00950 Erythranthe guttata HOM05D003390 ORTHO05D004189 9.4e-61 237.7 239 52.3
Medtr2g028770 Medicago truncatula HOM05D003390 ORTHO05D004189 1.6e-60 236.9 224 56.7
Nitab4.5_0001826g0010 Nicotiana tabacum HOM05D003390 ORTHO05D004189 1.6e-60 236.9 235 53.6
Duzib192G0036 Durio zibethinus HOM05D003390 ORTHO05D004189 2.1e-60 236.5 240 52.1
BcaB03g12182 Brassica carinata HOM05D003390 ORTHO05D004189 3.6e-60 235.7 224 56.2
ECA234G1186 Erigeron canadensis HOM05D003390 ORTHO05D004189 3.6e-60 235.7 227 52.9
Gohir.D06G205600 Gossypium hirsutum HOM05D003390 ORTHO05D004189 4.7e-60 235.3 238 52.9
Lj1A1183G65 Lonicera japonica HOM05D003390 ORTHO05D004189 4.7e-60 235.3 241 52.3
MBI07_g07829_MAGBIO Magnolia biondii HOM05D003390 ORTHO05D004189 4.7e-60 235.3 246 49.6
MD10G1266700 Malus domestica HOM05D003390 ORTHO05D004189 4.7e-60 235.3 225 53.3
Actinidia39555 Actinidia chinensis HOM05D003390 ORTHO05D004189 8.0e-60 234.6 223 56.5
DCAR_013317 Daucus carota HOM05D003390 ORTHO05D004189 8.0e-60 234.6 237 51.9
Gohir.A06G198200 Gossypium hirsutum HOM05D003390 ORTHO05D004189 8.0e-60 234.6 238 52.9
Gorai.010G239900 Gossypium raimondii HOM05D003390 ORTHO05D004189 8.0e-60 234.6 238 52.5
MBI07_g35048_MAGBIO Magnolia biondii HOM05D003390 ORTHO05D004189 8.0e-60 234.6 245 49.4
Manes.17G065600 Manihot esculenta HOM05D003390 ORTHO05D004189 8.0e-60 234.6 238 51.7
Lj6g0006873 Lotus japonicus HOM05D003390 ORTHO05D004189 1.0e-59 234.2 225 54.2
Ca_06279_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 1.8e-59 233.4 235 51.1
Ca_30614_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 1.8e-59 233.4 235 51.1
Rhsim12G0071900 Rhododendron simsii HOM05D003390 ORTHO05D004189 1.8e-59 233.4 240 52.5
CsaV3_1G032710 Cucumis sativus L. HOM05D003390 ORTHO05D004189 2.3e-59 233.0 224 53.6
FvH4_6g38330 Fragaria vesca HOM05D003390 ORTHO05D004189 2.3e-59 233.0 242 51.2
Lj1A614G6 Lonicera japonica HOM05D003390 ORTHO05D004189 2.3e-59 233.0 234 56.0
Nitab4.5_0000206g0100 Nicotiana tabacum HOM05D003390 ORTHO05D004189 2.3e-59 233.0 238 52.1
THA.LOC104820634 Tarenaya hassleriana HOM05D003390 ORTHO05D004189 2.3e-59 233.0 205 58.0
PGR031G1555 Punica granatum HOM05D003390 ORTHO05D004189 4.0e-59 232.3 240 50.8
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 6.8e-59 231.5 228 54.4
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 6.8e-59 231.5 228 54.4
CDE08G1393 Ceratophyllum demersum HOM05D003390 ORTHO05D004189 6.8e-59 231.5 269 46.8
Dinv30696 Davidia involucrata HOM05D003390 ORTHO05D004189 8.8e-59 231.1 234 52.6
BcaC01g00142 Brassica carinata HOM05D003390 ORTHO05D004189 1.2e-58 230.7 229 54.6
Glyma.15G125900 Glycine max HOM05D003390 ORTHO05D004189 1.2e-58 230.7 244 50.0
C03p76240 Brassica napus HOM05D003390 ORTHO05D004189 1.5e-58 230.3 224 55.4
Ca_11357_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 1.5e-58 230.3 231 52.4
Sopen02g005990 Solanum pennellii HOM05D003390 ORTHO05D004189 1.5e-58 230.3 245 49.8
TPR.G12521 Trifolium pratense HOM05D003390 ORTHO05D004189 1.5e-58 230.3 235 51.5
Eucgr.A01981 Eucalyptus grandis HOM05D003390 ORTHO05D004189 2.0e-58 229.9 216 57.4
SGA_v2.0_scaffold4G02117 Striga asiatica HOM05D003390 ORTHO05D004189 2.0e-58 229.9 226 52.2
AUR62027570 Chenopodium quinoa HOM05D003390 ORTHO05D004189 3.4e-58 229.2 234 53.8
PGSC0003DMG400003171 Solanum tuberosum HOM05D003390 ORTHO05D004189 4.4e-58 228.8 252 48.4
BolC3t19880H Brassica oleracea HOM05D003390 ORTHO05D004189 5.7e-58 228.4 224 54.9
Sed0005552 Sechium edule HOM05D003390 ORTHO05D004189 5.7e-58 228.4 229 51.5
VMungo0540G2227 Vigna mungo HOM05D003390 ORTHO05D004189 5.7e-58 228.4 250 49.2
Cc09_g09610 Coffea canephora HOM05D003390 ORTHO05D004189 7.5e-58 228.0 239 49.0
Lsat_1_v5_gn_4_29721 Lactuca sativa HOM05D003390 ORTHO05D004189 7.5e-58 228.0 223 50.2
Medtr5g091570 Medicago truncatula HOM05D003390 ORTHO05D004189 7.5e-58 228.0 240 50.0
AUR62035789 Chenopodium quinoa HOM05D003390 ORTHO05D004189 9.8e-58 227.6 234 52.1
TWI09G1133 Tripterygium wilfordii HOM05D003390 ORTHO05D004189 9.8e-58 227.6 239 51.9
arahy.Tifrunner.gnm1.ann1.QBP2NG Arachis hypogaea HOM05D003390 ORTHO05D004189 1.3e-57 227.3 227 52.4
arahy.Tifrunner.gnm1.ann1.WT2YK3 Arachis hypogaea HOM05D003390 ORTHO05D004189 1.3e-57 227.3 227 52.4
Ciclev10014753m.g Citrus clementina HOM05D003390 ORTHO05D004189 1.3e-57 227.3 244 52.0
Ah.09g232910 Amaranthus hybridus HOM05D003390 ORTHO05D004189 1.7e-57 226.9 238 51.7
HanXRQChr16g0525801 Helianthus annuus HOM05D003390 ORTHO05D004189 1.7e-57 226.9 232 50.9
RcHm_v2.0_Chr5g0013021 Rosa chinensis HOM05D003390 ORTHO05D004189 1.7e-57 226.9 208 55.8
Sp1g25730 Schrenkiella parvula HOM05D003390 ORTHO05D004189 2.8e-57 226.1 206 58.3
EL10Ac8g19781 Beta vulgaris HOM05D003390 ORTHO05D004189 3.7e-57 225.7 234 52.6
CANSAT35G0642 Cannabis sativa HOM05D003390 ORTHO05D004189 3.7e-57 225.7 233 49.8
CiPaw.09G127300 Carya illinoinensis HOM05D003390 ORTHO05D004189 4.8e-57 225.3 248 52.8
MELO3C002711.2 Cucumis melo HOM05D003390 ORTHO05D004189 6.3e-57 224.9 231 51.9
Thhalv10007315m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 6.3e-57 224.9 220 55.9
Psat1g170120 Pisum sativum HOM05D003390 ORTHO05D004189 8.3e-57 224.6 230 52.2
QL05p060163 Quercus lobata HOM05D003390 ORTHO05D004189 8.3e-57 224.6 231 51.1
Hund21490 Selenicereus undatus HOM05D003390 ORTHO05D004189 8.3e-57 224.6 231 52.4
CARHR029610 Cardamine hirsuta HOM05D003390 ORTHO05D004189 1.1e-56 224.2 220 53.6
Cpa.g.sc17.128 Carica papaya HOM05D003390 ORTHO05D004189 1.4e-56 223.8 237 50.6
unitig_748.g7439 Utricularia gibba HOM05D003390 ORTHO05D004189 1.4e-56 223.8 220 54.1
PGR042G1945 Punica granatum HOM05D003390 ORTHO05D004189 1.8e-56 223.4 216 53.7
CiPaw.09G127400 Carya illinoinensis HOM05D003390 ORTHO05D004189 3.1e-56 222.6 245 51.8
Eucgr.D00339 Eucalyptus grandis HOM05D003390 ORTHO05D004189 3.1e-56 222.6 230 52.2
Lalb_Chr10g0106641 Lupinus albus HOM05D003390 ORTHO05D004189 3.1e-56 222.6 240 49.6
AT1G29820 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 5.4e-56 221.9 223 53.4
Psat2g016080 Pisum sativum HOM05D003390 ORTHO05D004189 5.4e-56 221.9 230 50.0
Sc05g0006540 Simmondsia chinensis HOM05D003390 ORTHO05D004189 9.1e-56 221.1 236 50.8
Aa31LG6G5840 Aethionema arabicum HOM05D003390 ORTHO05D004189 1.6e-55 220.3 212 55.7
Lalb_Chr18g0057721 Lupinus albus HOM05D003390 ORTHO05D004189 2.0e-55 219.9 238 50.8
Phvul.006G132300 Phaseolus vulgaris HOM05D003390 ORTHO05D004189 2.0e-55 219.9 211 52.6
Cfa000990 Carpinus fangiana HOM05D003390 ORTHO05D004189 4.5e-55 218.8 239 50.6
AL1G43660 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 1.0e-54 217.6 220 52.3
GSVIVG01021390001 Vitis vinifera HOM05D003390 ORTHO05D004189 1.0e-54 217.6 228 50.0
LjContig00049g0028197 Lotus japonicus HOM05D003390 ORTHO05D004189 2.3e-54 216.5 241 47.7
AT1G29830 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 3.8e-54 215.7 245 51.0
Carub.0001s2807 Capsella rubella HOM05D003390 ORTHO05D004189 3.8e-54 215.7 206 58.3
Zm00001eb359660 Zea mays HOM05D003390 ORTHO05D004189 3.8e-54 215.7 224 48.7
Glyma.02G285600 Glycine max HOM05D003390 ORTHO05D004189 8.6e-54 214.5 236 50.0
arahy.Tifrunner.gnm1.ann1.VAF4MI Arachis hypogaea HOM05D003390 ORTHO05D004189 1.1e-53 214.2 221 51.6
Migut.H02104 Erythranthe guttata HOM05D003390 ORTHO05D004189 2.5e-53 213.0 231 49.4
Os01g0664100 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 2.5e-53 213.0 227 50.2
HPP92_008031 Vanilla planifolia HOM05D003390 ORTHO05D004189 3.3e-53 212.6 220 51.8
MSTRG.7463 Avicennia marina HOM05D003390 ORTHO05D004189 5.5e-53 211.8 238 50.0
HanXRQChr05g0147821 Helianthus annuus HOM05D003390 ORTHO05D004189 7.2e-53 211.5 223 51.6
Potri.001G353000 Populus trichocarpa HOM05D003390 ORTHO05D004189 7.2e-53 211.5 239 50.6
arahy.Tifrunner.gnm1.ann1.0JHG5Q Arachis hypogaea HOM05D003390 ORTHO05D004189 1.2e-52 210.7 223 48.9
BNapus_Darmor_BZH_scaffold_64p00180 Brassica napus HOM05D003390 ORTHO05D004189 2.8e-52 209.5 203 54.7
BraA04t18699Z Brassica rapa HOM05D003390 ORTHO05D004189 2.8e-52 209.5 203 54.7
Sp4g25080 Schrenkiella parvula HOM05D003390 ORTHO05D004189 2.8e-52 209.5 206 53.9
COL.COLO4_07486 Corchorus olitorius HOM05D003390 ORTHO05D018142 1.4e-51 207.2 234 49.1
SEGI_06697 Sequoiadendron giganteum HOM05D003390 ORTHO05D004189 1.8e-51 206.8 235 47.7
ECA232G3556 Erigeron canadensis HOM05D003390 ORTHO05D004189 5.2e-51 205.3 229 48.5
Solyc00g500373.1 Solanum lycopersicum HOM05D003390 ORTHO05D018142 6.8e-51 204.9 238 47.1
Solyc02g021490.1 Solanum lycopersicum HOM05D003390 ORTHO05D018142 6.8e-51 204.9 238 47.1
Thhalv10016539m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 2.0e-50 203.4 206 51.9
FAN14G5098 Fragaria x ananassa HOM05D003390 ORTHO05D004189 2.0e-50 203.4 219 51.6
AT2G42950 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 2.6e-50 203.0 218 50.5
BcaB06g29273 Brassica carinata HOM05D003390 ORTHO05D004189 3.4e-50 202.6 202 52.0
Carub.0004s2542 Capsella rubella HOM05D003390 ORTHO05D004189 5.7e-50 201.8 206 51.5
CARHR138010 Cardamine hirsuta HOM05D003390 ORTHO05D004189 7.5e-50 201.4 206 51.5
Os01g0601000 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 7.5e-50 201.4 211 51.2
Aa31LG1G24700 Aethionema arabicum HOM05D003390 ORTHO05D004189 9.8e-50 201.1 204 51.0
Lsat_1_v5_gn_0_8061 Lactuca sativa HOM05D003390 ORTHO05D004189 2.2e-49 199.9 227 50.7
TPR.G10814 Trifolium pratense HOM05D003390 ORTHO05D018142 2.8e-49 199.5 215 49.3
RcHm_v2.0_Chr2g0151641 Rosa chinensis HOM05D003390 ORTHO05D004189 4.9e-49 198.7 252 48.8
BolC4t28499H Brassica oleracea HOM05D003390 ORTHO05D004189 6.3e-49 198.4 204 53.4
ClCG03G007130 Citrullus lanatus HOM05D003390 ORTHO05D004189 6.3e-49 198.4 219 48.4
C04p69990 Brassica napus HOM05D003390 ORTHO05D004189 2.4e-48 196.4 204 53.9
BcaC02g07214 Brassica carinata HOM05D003390 ORTHO05D004189 5.4e-48 195.3 204 52.9
Duzib187G0551 Durio zibethinus HOM05D003390 ORTHO05D018142 3.5e-47 192.6 232 48.3
ATR1131G058 Amborella trichopoda HOM05D003390 ORTHO05D004189 1.3e-46 190.7 117 72.6
Glyma.09G019602 Glycine max HOM05D003390 ORTHO05D018142 1.7e-46 190.3 231 45.5
MD16G1203400 Malus domestica HOM05D003390 ORTHO05D004189 3.9e-46 189.1 123 69.9
Mapoly0130s0010 Marchantia polymorpha HOM05D003390 ORTHO05D004189 8.9e-43 177.9 239 43.1
Atru.chr10.1373 Acer truncatum HOM05D003390 ORTHO05D018142 2.2e-41 173.3 209 45.9
AagrBONN_evm.TU.Sc2ySwM_228.3525 Anthoceros agrestis HOM05D003390 ORTHO05D004189 2.2e-41 173.3 207 43.0
Pp3c15_4880 Physcomitrium patens HOM05D003390 ORTHO05D004189 3.7e-41 172.6 240 38.3
Pp3c9_16960 Physcomitrium patens HOM05D003390 ORTHO05D004189 8.3e-41 171.4 246 37.0
Haze_05526 Corylus avellana HOM05D003390 ORTHO05D004189 1.4e-40 170.6 235 43.4
Eucgr.A01987 Eucalyptus grandis HOM05D003390 ORTHO05D004189 5.4e-40 168.7 132 61.4
TPR.G17499 Trifolium pratense HOM05D003390 ORTHO05D004189 7.0e-40 168.3 230 43.9
TPR.G7093 Trifolium pratense HOM05D003390 ORTHO05D004189 9.2e-40 167.9 107 72.9
MD17G1138500 Malus domestica HOM05D003390 ORTHO05D004189 4.6e-39 165.6 101 74.3
Pp3c9_12460 Physcomitrium patens HOM05D003390 ORTHO05D004189 1.7e-38 163.7 239 40.6
Actinidia07674 Actinidia chinensis HOM05D003390 ORTHO05D004189 3.7e-33 146.0 88 72.7
Eucgr.A01984 Eucalyptus grandis HOM05D003390 ORTHO05D004189 2.3e-30 136.7 114 59.6
FAN19G1589 Fragaria x ananassa HOM05D003390 ORTHO05D004189 8.6e-30 134.8 209 41.1
AL4G41580 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 1.1e-29 134.4 207 42.5
FvH4_1g24850 Fragaria vesca HOM05D003390 ORTHO05D004189 1.1e-29 134.4 209 40.7
FAN26G2057 Fragaria x ananassa HOM05D003390 ORTHO05D004189 2.5e-29 133.3 208 41.3
vmacro15692 Vaccinium macrocarpon HOM05D000244 ORTHO05D000179 5.8e-18 95.5 53 83.0
FAN09G2932 Fragaria x ananassa HOM05D003390 ORTHO05D004189 5.3e-11 72.4 224 30.4
Sabra16G0232300 Salix brachista HOM05D003390 ORTHO05D004189 5.8e-10 68.9 36 91.7


User provided reference genes

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