Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 3.5e-181 638.3 349 100.0
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 9.2e-121 437.6 307 76.5
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 8.3e-114 414.5 307 68.7
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 3.3e-110 402.5 307 65.8
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.4e-108 397.1 314 68.5
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 4.1e-105 385.6 300 70.0
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 7.0e-105 384.8 300 66.3
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 1.2e-104 384.0 307 68.1
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 5.0e-103 378.6 307 64.5
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 4.3e-102 375.6 302 62.9
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 6.2e-101 371.7 308 61.4
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 1.8e-100 370.2 307 61.2
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 2.3e-100 369.8 307 63.8
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 5.2e-100 368.6 306 61.4
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 8.9e-100 367.9 307 60.6
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 1.2e-99 367.5 301 62.1
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 1.7e-98 363.6 312 62.5
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 2.2e-98 363.2 307 58.3
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 3.7e-98 362.5 276 65.6
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 3.7e-98 362.5 307 64.5
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 5.4e-97 358.6 312 61.2
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 1.2e-96 357.5 308 65.3
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 1.6e-96 357.1 307 58.6
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 6.0e-96 355.1 309 59.2
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 6.0e-96 355.1 305 61.3
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 6.0e-96 355.1 310 59.7
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 7.8e-96 354.8 307 61.6
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 1.0e-95 354.4 307 60.9
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.3e-95 353.2 310 62.9
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 8.6e-95 351.3 306 63.1
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 8.6e-95 351.3 314 59.6
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.1e-94 350.9 307 59.6
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.1e-94 350.9 307 59.6
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.5e-94 350.5 309 58.9
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 2.5e-94 349.7 309 64.7
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 3.3e-94 349.4 307 60.6
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 9.5e-94 347.8 307 67.1
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 6.2e-93 345.1 309 62.1
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 1.8e-92 343.6 312 56.4
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 4.0e-92 342.4 301 59.1
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 5.2e-92 342.0 309 64.4
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 6.8e-92 341.7 301 59.1
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 6.8e-92 341.7 309 57.6
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 1.2e-91 340.9 311 62.1
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 1.5e-91 340.5 314 56.4
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 2.0e-91 340.1 307 61.2
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 2.6e-91 339.7 300 58.0
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 5.8e-91 338.6 309 60.8
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 1.7e-90 337.0 286 59.8
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 2.9e-90 336.3 309 57.0
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 1.4e-89 334.0 307 57.0
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 3.2e-89 332.8 309 55.3
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 7.1e-89 331.6 302 61.9
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 9.2e-89 331.3 307 56.7
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 2.1e-88 330.1 308 54.5
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 3.5e-88 329.3 300 54.3
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 3.5e-88 329.3 312 57.7
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 4.6e-88 328.9 309 59.5
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 4.6e-88 328.9 312 57.4
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.0e-87 327.8 307 57.7
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 1.0e-87 327.8 302 55.6
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 1.3e-87 327.4 349 50.7
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 3.0e-87 326.2 307 56.4
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 3.9e-87 325.9 306 60.5
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 3.9e-87 325.9 307 60.3
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 1.5e-86 323.9 307 53.7
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 1.5e-86 323.9 307 56.0
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.9e-86 323.6 292 57.2
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 3.3e-86 322.8 307 57.7
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 3.3e-86 322.8 307 54.4
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 3.3e-86 322.8 308 54.2
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 5.6e-86 322.0 307 53.4
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 2.8e-85 319.7 309 58.6
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 1.4e-84 317.4 304 58.2
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 3.1e-84 316.2 309 57.6
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 4.0e-84 315.8 301 52.2
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 9.0e-84 314.7 308 52.3
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 1.5e-83 313.9 308 57.8
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 5.8e-83 312.0 309 57.9
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 5.8e-83 312.0 301 51.2
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 5.8e-83 312.0 299 52.2
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 4.9e-82 308.9 309 57.0
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 8.4e-82 308.1 307 51.8
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 8.4e-82 308.1 307 51.8
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 8.4e-82 308.1 319 53.6
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 1.1e-81 307.8 307 52.1
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 2.1e-80 303.5 277 56.7
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 1.3e-79 300.8 304 56.2
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 1.3e-79 300.8 304 56.2
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 3.0e-79 299.7 307 51.1
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 5.1e-79 298.9 304 55.6
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 8.7e-79 298.1 304 55.6
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 8.7e-79 298.1 304 55.6
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 1.5e-78 297.4 307 55.4
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 1.9e-78 297.0 264 57.6
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 1.9e-78 297.0 262 64.1
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 3.3e-78 296.2 278 56.8
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 3.3e-78 296.2 246 61.4
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 4.8e-77 292.4 308 51.6
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 2.4e-76 290.0 295 51.5
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 2.4e-76 290.0 254 59.4
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 9.0e-76 288.1 289 51.9
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 5.8e-75 285.4 306 54.2
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 2.9e-74 283.1 282 55.3
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 8.4e-74 281.6 309 52.1
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 8.4e-74 281.6 307 52.8
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 3.2e-73 279.6 269 55.4
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 5.4e-73 278.9 353 47.3
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 5.4e-73 278.9 353 47.3
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 1.2e-72 277.7 308 50.6
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.1e-72 276.9 349 47.0
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 3.9e-71 272.7 261 56.7
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 3.3e-70 269.6 308 48.1
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 7.4e-70 268.5 302 49.3
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 9.6e-70 268.1 269 53.5
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.7e-69 266.2 279 59.1
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 2.4e-68 263.5 268 57.5
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 4.5e-67 259.2 197 64.0
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 7.6e-67 258.5 347 46.7
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 6.4e-66 255.4 326 47.2
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 2.7e-64 250.0 290 48.3
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 3.5e-64 249.6 377 43.2
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 6.7e-63 245.4 307 44.6
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 7.4e-62 241.9 315 46.3
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 2.1e-61 240.4 193 62.7
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 6.2e-61 238.8 246 53.7
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 1.2e-59 234.6 300 45.7
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 5.8e-59 232.3 240 55.4
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 4.2e-57 226.1 262 50.4
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.6e-56 224.2 261 44.8
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.8e-55 220.7 263 46.8
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 4.8e-53 212.6 262 46.2
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 1.8e-52 210.7 158 70.3
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 1.2e-51 208.0 174 64.4
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.0e-50 204.9 256 47.7
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.7e-50 204.1 181 56.4
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 8.5e-50 201.8 182 60.4
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.4e-49 201.1 262 46.6
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 1.2e-48 198.0 275 44.7
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 7.9e-48 195.3 162 60.5
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 1.0e-47 194.9 476 32.4
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.2e-42 177.2 271 46.5
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 5.0e-42 176.0 180 53.3
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 4.4e-38 162.9 150 50.0
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 5.3e-36 156.0 110 72.7
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 1.1e-33 148.3 149 51.0
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 2.7e-32 143.7 109 67.9
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 8.0e-32 142.1 159 52.8
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 2.0e-30 137.5 129 58.9
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 9.7e-30 135.2 151 45.0
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.7e-29 134.4 117 56.4
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 6.3e-29 132.5 146 50.7
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 8.2e-29 132.1 117 57.3
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.2e-27 128.3 109 65.1
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 7.7e-27 125.6 123 53.7
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.5e-25 120.6 229 43.2
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 6.1e-24 115.9 221 40.3
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 1.3e-21 108.2 83 57.8
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 4.5e-19 99.8 72 69.4
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 7.2e-17 92.4 59 69.5
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.4e-15 88.2 59 64.4
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 6.8e-15 85.9 79 55.7
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 2.8e-13 80.5 92 54.3
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 1.4e-12 78.2 87 47.1
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 4.1e-12 76.6 75 57.3
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 3.8e-10 70.1 77 53.2
vmacro10943 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 6.5e-10 69.3 45 66.7


User provided reference genes

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