Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 9.8e-55 216.5 103 100.0
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 2.8e-25 118.6 68 82.4
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 4.7e-25 117.9 71 81.7
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 6.2e-25 117.5 68 82.4
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.1e-24 116.7 66 81.8
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.8e-24 115.9 68 80.9
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.8e-24 115.9 68 80.9
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.8e-24 115.9 68 80.9
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 6.8e-24 114.0 71 76.1
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 8.9e-24 113.6 71 74.6
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 8.9e-24 113.6 71 74.6
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.5e-23 112.8 71 76.1
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.5e-23 112.8 71 76.1
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.0e-23 112.5 67 76.1
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 2.6e-23 112.1 69 73.9
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 2.6e-23 112.1 68 76.5
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.4e-23 111.7 64 82.8
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 7.6e-23 110.5 72 75.0
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 7.6e-23 110.5 68 75.0
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.3e-22 109.8 72 75.0
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.2e-22 109.0 67 77.6
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 2.2e-22 109.0 63 79.4
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.9e-22 108.6 78 69.2
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 3.8e-22 108.2 63 79.4
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.8e-22 108.2 64 81.2
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 4.9e-22 107.8 67 71.6
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 8.4e-22 107.1 64 78.1
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.1e-21 106.7 66 80.3
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.4e-21 106.3 64 79.7
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.4e-21 106.3 64 79.7
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.4e-21 106.3 66 75.8
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.4e-21 106.3 66 72.7
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.9e-21 105.9 60 81.7
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.9e-21 105.9 64 78.1
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.2e-21 105.1 64 75.0
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 3.2e-21 105.1 66 75.8
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 4.2e-21 104.8 65 75.4
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 5.4e-21 104.4 62 77.4
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 7.1e-21 104.0 64 76.6
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 7.1e-21 104.0 69 68.1
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 7.1e-21 104.0 68 69.1
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 9.2e-21 103.6 66 72.7
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 9.2e-21 103.6 66 74.2
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.2e-20 103.2 64 73.4
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.2e-20 103.2 69 69.6
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.2e-20 103.2 69 68.1
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.2e-20 103.2 65 75.4
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.2e-20 103.2 69 68.1
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.2e-20 103.2 71 70.4
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 2.1e-20 102.4 64 73.4
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.1e-20 102.4 67 70.1
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.7e-20 102.1 62 77.4
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 2.7e-20 102.1 68 69.1
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.7e-20 102.1 64 75.0
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 3.5e-20 101.7 64 70.3
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 4.6e-20 101.3 66 71.2
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 6.0e-20 100.9 69 68.1
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.0e-19 100.1 73 68.5
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.0e-19 100.1 82 62.2
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.0e-19 100.1 76 64.5
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.0e-19 100.1 66 75.8
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.0e-19 100.1 64 73.4
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.0e-19 100.1 66 68.2
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.3e-19 99.8 63 71.4
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.3e-19 99.8 63 74.6
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.7e-19 99.4 62 74.2
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 2.3e-19 99.0 71 70.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.3e-19 99.0 71 69.0
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 3.9e-19 98.2 72 68.1
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.9e-19 98.2 66 69.7
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 3.9e-19 98.2 67 73.1
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 5.1e-19 97.8 66 69.7
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 5.1e-19 97.8 64 73.4
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 5.1e-19 97.8 68 70.6
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 5.1e-19 97.8 62 72.6
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 6.6e-19 97.4 66 68.2
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 6.6e-19 97.4 66 68.2
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 6.6e-19 97.4 65 67.7
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 6.6e-19 97.4 64 65.6
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 8.7e-19 97.1 64 70.3
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 8.7e-19 97.1 73 67.1
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 8.7e-19 97.1 62 71.0
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.5e-18 96.3 57 73.7
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.5e-18 96.3 57 73.7
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.5e-18 96.3 62 69.4
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.9e-18 95.9 69 65.2
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.9e-18 95.9 57 71.9
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.9e-18 95.9 62 74.2
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.5e-18 95.5 65 67.7
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 4.3e-18 94.7 66 72.7
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.6e-17 92.8 64 70.3
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 2.1e-17 92.4 68 67.6
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.8e-17 92.0 67 65.7
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 3.6e-17 91.7 67 65.7
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.8e-17 91.3 66 62.1
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 6.2e-17 90.9 57 70.2
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 6.2e-17 90.9 63 63.5
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.1e-16 90.1 56 69.6
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.4e-16 89.7 67 64.2
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.4e-16 89.7 66 63.6
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.4e-16 89.7 58 70.7
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.8e-16 89.4 64 65.6
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 4.0e-16 88.2 66 63.6
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 4.0e-16 88.2 66 63.6
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.2e-15 86.7 63 68.3
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.2e-15 86.7 63 68.3
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.5e-15 86.3 57 73.7
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.5e-15 86.3 57 73.7
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.0e-15 85.9 57 71.9
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.0e-15 85.9 63 68.3
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 2.6e-15 85.5 57 71.9
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 3.4e-15 85.1 57 71.9
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 3.4e-15 85.1 57 71.9
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 3.4e-15 85.1 57 71.9
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 3.4e-15 85.1 57 71.9
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 3.4e-15 85.1 65 58.5
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 3.4e-15 85.1 66 63.6
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.4e-15 84.7 57 66.7
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 5.8e-15 84.3 57 71.9
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 7.6e-15 84.0 63 66.7
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 7.6e-15 84.0 63 66.7
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.9e-14 82.0 57 70.2
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 2.9e-14 82.0 57 70.2
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 3.8e-14 81.6 57 70.2
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 3.2e-13 78.6 98 46.9
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 9.3e-13 77.0 45 75.6
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.1e-12 75.9 45 73.3
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.0e-11 73.6 44 72.7
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.0e-11 73.6 45 68.9
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.7e-11 72.8 59 59.3
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.7e-11 72.8 45 73.3
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.7e-11 72.8 63 49.2
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 8.7e-11 70.5 62 56.5
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.5e-10 69.7 45 66.7
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.5e-10 68.9 44 68.2
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.3e-09 66.6 45 66.7
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.3e-09 66.6 67 46.3
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.4e-08 63.2 59 50.8
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.0e-08 61.6 45 64.4
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.5e-07 59.7 45 62.2
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 3.4e-07 58.5 52 61.5
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 1.3e-06 56.6 35 71.4


User provided reference genes

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