Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1996 Acer truncatum HOM05D003304 ORTHO05D003762 3.1e-75 286.2 316 100.0
Sabra10G0007700 Salix brachista HOM05D003304 ORTHO05D003762 1.9e-32 144.1 150 59.3
Potri.010G012000 Populus trichocarpa HOM05D003304 ORTHO05D003762 6.1e-31 139.0 145 60.0
RcHm_v2.0_Chr4g0422951 Rosa chinensis HOM05D003304 ORTHO05D003762 1.4e-30 137.9 136 60.3
Duzib052G0413 Durio zibethinus HOM05D003304 ORTHO05D003762 3.0e-30 136.7 136 63.2
QL06p009983 Quercus lobata HOM05D003304 ORTHO05D003762 5.2e-30 136.0 113 69.0
QL93p2007_0071 Quercus lobata HOM05D003304 ORTHO05D003762 5.2e-30 136.0 113 69.0
Gorai.011G191600 Gossypium raimondii HOM05D003304 ORTHO05D003762 1.5e-29 134.4 151 60.9
FAN07G2181 Fragaria x ananassa HOM05D003304 ORTHO05D003762 2.0e-29 134.0 136 56.6
FAN12G0090 Fragaria x ananassa HOM05D003304 ORTHO05D003762 4.4e-29 132.9 136 56.6
FAN17G2918 Fragaria x ananassa HOM05D003304 ORTHO05D003762 4.4e-29 132.9 135 57.0
FvH4_4g18460 Fragaria vesca HOM05D003304 ORTHO05D003762 5.7e-29 132.5 136 56.6
Gohir.D10G171500 Gossypium hirsutum HOM05D003304 ORTHO05D003762 9.7e-29 131.7 151 60.3
Manes.15G011400 Manihot esculenta HOM05D003304 ORTHO05D003762 6.3e-28 129.0 135 64.4
Thecc.04G287300 Theobroma cacao HOM05D003304 ORTHO05D003762 6.3e-28 129.0 136 57.4
FAN12G1565 Fragaria x ananassa HOM05D003304 ORTHO05D003762 8.2e-28 128.6 136 55.9
Ciclev10004985m.g Citrus clementina HOM05D003304 ORTHO05D003762 7.7e-26 122.1 142 61.3
TWI53G1575 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 7.7e-26 122.1 136 53.7
MD16G1166700 Malus domestica HOM05D003304 ORTHO05D003762 1.7e-25 120.9 138 55.8
TWI09G1044 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 1.1e-24 118.2 135 52.6
CANSAT78G0081 Cannabis sativa HOM05D003304 ORTHO05D003762 3.2e-24 116.7 76 78.9
Gohir.A10G165400 Gossypium hirsutum HOM05D003304 ORTHO05D003762 4.2e-24 116.3 151 55.6
Potri.008G220700 Populus trichocarpa HOM05D003304 ORTHO05D003762 1.2e-23 114.8 99 66.7
CiPaw.01G146800 Carya illinoinensis HOM05D003304 ORTHO05D003762 4.7e-23 112.8 136 57.4
COL.COLO4_13834 Corchorus olitorius HOM05D003304 ORTHO05D003762 1.0e-22 111.7 114 65.8
MELO3C021319.2 Cucumis melo HOM05D003304 ORTHO05D003762 1.0e-22 111.7 135 51.1
Medtr4g120050 Medicago truncatula HOM05D003304 ORTHO05D003762 1.4e-22 111.3 142 58.5
Lalb_Chr13g0303541 Lupinus albus HOM05D003304 ORTHO05D003762 1.8e-22 110.9 141 49.6
ClCG06G005040 Citrullus lanatus HOM05D003304 ORTHO05D003762 2.3e-22 110.5 135 54.1
Haze_01180 Corylus avellana HOM05D003304 ORTHO05D003762 3.0e-22 110.2 136 56.6
TWI73G0854 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 3.0e-22 110.2 134 58.2
Phvul.003G096600 Phaseolus vulgaris HOM05D003304 ORTHO05D003762 1.7e-20 104.4 56 87.5
THA.LOC104827338 Tarenaya hassleriana HOM05D003304 ORTHO05D003762 1.7e-20 104.4 60 83.3
VMungo1215G1188 Vigna mungo HOM05D003304 ORTHO05D003762 1.7e-20 104.4 56 87.5
Sed0002765 Sechium edule HOM05D003304 ORTHO05D003762 1.1e-19 101.7 142 49.3
Dinv29740 Davidia involucrata HOM05D003304 ORTHO05D003762 2.4e-19 100.5 138 48.6
Cpa.g.sc16.193 Carica papaya HOM05D003304 ORTHO05D003762 5.4e-19 99.4 135 53.3
CsaV3_6G023920 Cucumis sativus L. HOM05D003304 ORTHO05D003762 7.0e-19 99.0 137 48.2
TPR.G3216 Trifolium pratense HOM05D003304 ORTHO05D003762 7.0e-19 99.0 60 83.3
Carub.0008s0891 Capsella rubella HOM05D003304 ORTHO05D003762 9.1e-19 98.6 61 80.3
CSS0031454 Camellia sinensis var. sinensis HOM05D003304 ORTHO05D003762 1.2e-18 98.2 63 81.0
THA.LOC104803101 Tarenaya hassleriana HOM05D003304 ORTHO05D003762 1.2e-18 98.2 62 79.0
AL8G22610 Arabidopsis lyrata HOM05D003304 ORTHO05D003762 1.6e-18 97.8 61 80.3
Duzib212G1014 Durio zibethinus HOM05D003304 ORTHO05D003762 2.0e-18 97.4 47 93.6
AT5G49100 Arabidopsis thaliana HOM05D003304 ORTHO05D003762 2.7e-18 97.1 61 78.7
Oeu006408.1 Olea europaea HOM05D003304 ORTHO05D003762 3.5e-18 96.7 138 55.8
Oeu001109.1 Olea europaea HOM05D003304 ORTHO05D003762 4.5e-18 96.3 61 80.3
Prupe.1G133400 Prunus persica HOM05D003304 ORTHO05D003762 4.5e-18 96.3 55 81.8
BcaB07g34216 Brassica carinata HOM05D003304 ORTHO05D003762 1.0e-17 95.1 61 78.7
Glyma.17G027500 Glycine max HOM05D003304 ORTHO05D003762 1.0e-17 95.1 55 81.8
Thhalv10004314m.g Eutrema salsugineum HOM05D003304 ORTHO05D003762 1.3e-17 94.7 61 77.0
Psat4g026560 Pisum sativum HOM05D003304 ORTHO05D003762 1.3e-17 94.7 136 50.0
Sopen01g028290 Solanum pennellii HOM05D003304 ORTHO05D003762 1.7e-17 94.4 64 78.1
Lj4g0014231 Lotus japonicus HOM05D003304 ORTHO05D003762 2.2e-17 94.0 135 54.1
Migut.G00140 Erythranthe guttata HOM05D003304 ORTHO05D003762 2.9e-17 93.6 75 69.3
PGSC0003DMG400035598 Solanum tuberosum HOM05D003304 ORTHO05D003762 2.9e-17 93.6 64 78.1
Actinidia14289 Actinidia chinensis HOM05D003304 ORTHO05D003762 5.0e-17 92.8 67 71.6
Solyc01g066640.2 Solanum lycopersicum HOM05D003304 ORTHO05D003762 5.0e-17 92.8 63 77.8
CAN.G261.4 Capsicum annuum HOM05D003304 ORTHO05D003762 6.5e-17 92.4 137 45.3
Glyma.07G246500 Glycine max HOM05D003304 ORTHO05D003762 1.1e-16 91.7 134 44.8
BcaC03g17695 Brassica carinata HOM05D003304 ORTHO05D003762 2.5e-16 90.5 60 75.0
C02p57040 Brassica napus HOM05D003304 ORTHO05D003762 2.5e-16 90.5 60 75.0
BolC2t11774H Brassica oleracea HOM05D003304 ORTHO05D003762 2.5e-16 90.5 60 75.0
Hund24887 Selenicereus undatus HOM05D003304 ORTHO05D003762 2.5e-16 90.5 138 57.2
MD13G1166900 Malus domestica HOM05D003304 ORTHO05D003762 5.5e-16 89.4 140 51.4
Manes.03G197200 Manihot esculenta HOM05D003304 ORTHO05D003762 5.5e-16 89.4 61 77.0
A02p37880 Brassica napus HOM05D003304 ORTHO05D003762 1.2e-15 88.2 61 77.0
BraA02t08771Z Brassica rapa HOM05D003304 ORTHO05D003762 1.2e-15 88.2 61 77.0
Rhsim02G0007700 Rhododendron simsii HOM05D003304 ORTHO05D003762 1.6e-15 87.8 60 76.7
Nitab4.5_0000513g0170 Nicotiana tabacum HOM05D003304 ORTHO05D003762 2.7e-15 87.0 60 80.0
C07p39670 Brassica napus HOM05D003304 ORTHO05D003762 3.6e-15 86.7 64 68.8
BolC7t44491H Brassica oleracea HOM05D003304 ORTHO05D003762 3.6e-15 86.7 64 68.8
DCAR_023290 Daucus carota HOM05D003304 ORTHO05D003762 4.7e-15 86.3 59 76.3
MSTRG.3901 Avicennia marina HOM05D003304 ORTHO05D003762 6.1e-15 85.9 135 43.7
PGR031G2491 Punica granatum HOM05D003304 ORTHO05D003762 6.1e-15 85.9 71 69.0
unitig_748.g8726 Utricularia gibba HOM05D003304 ORTHO05D003762 6.1e-15 85.9 60 70.0
A06p38580 Brassica napus HOM05D003304 ORTHO05D003762 8.0e-15 85.5 52 75.0
BraA06t26773Z Brassica rapa HOM05D003304 ORTHO05D003762 8.0e-15 85.5 51 76.5
Aqoxy3G03400 Aquilegia oxysepala HOM05D003304 ORTHO05D003762 1.0e-14 85.1 60 71.7
CiPaw.02G081100 Carya illinoinensis HOM05D003304 ORTHO05D003762 1.0e-14 85.1 47 80.9
Sp2g19450 Schrenkiella parvula HOM05D003304 ORTHO05D003762 1.0e-14 85.1 61 70.5
Sed0009993 Sechium edule HOM05D003304 ORTHO05D003762 1.4e-14 84.7 66 66.7
ECA240G0321 Erigeron canadensis HOM05D003304 ORTHO05D003762 1.8e-14 84.3 62 74.2
HanXRQChr03g0089411 Helianthus annuus HOM05D003304 ORTHO05D003762 1.8e-14 84.3 62 74.2
Lalb_Chr15g0083391 Lupinus albus HOM05D003304 ORTHO05D003762 1.8e-14 84.3 141 44.7
HanXRQChr13g0420021 Helianthus annuus HOM05D003304 ORTHO05D003762 3.0e-14 83.6 62 72.6
SGA_v2.0_scaffold18G08346 Striga asiatica HOM05D003304 ORTHO05D003762 3.0e-14 83.6 65 67.7
Nitab4.5_0005362g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 4.0e-14 83.2 60 76.7
Actinidia19582 Actinidia chinensis HOM05D003304 ORTHO05D003762 5.2e-14 82.8 138 44.9
Lsat_1_v5_gn_6_95300 Lactuca sativa HOM05D003304 ORTHO05D003762 6.8e-14 82.4 61 73.8
AT3G06868 Arabidopsis thaliana HOM05D003304 ORTHO05D003762 1.5e-13 81.3 56 69.6
Carub.0003s0640 Capsella rubella HOM05D003304 ORTHO05D003762 1.5e-13 81.3 54 72.2
Sabra08G0152100 Salix brachista HOM05D003304 ORTHO05D003762 1.5e-13 81.3 136 49.3
Aa31LG5G17450 Aethionema arabicum HOM05D003304 ORTHO05D003762 2.6e-13 80.5 46 78.3
Hma1.2p1_0078F.1_g040430 Hydrangea macrophylla HOM05D003304 ORTHO05D003762 2.6e-13 80.5 59 71.2
SGA_v2.0_scaffold67G22614 Striga asiatica HOM05D003304 ORTHO05D003762 3.4e-13 80.1 79 58.2
Cc03_g01680 Coffea canephora HOM05D003304 ORTHO05D003762 4.4e-13 79.7 49 81.6
Thhalv10021990m.g Eutrema salsugineum HOM05D003304 ORTHO05D003762 4.4e-13 79.7 52 73.1
Nn4g22032 Nelumbo nucifera HOM05D003304 ORTHO05D003762 4.4e-13 79.7 39 87.2
TAR622G1126 Trochodendron aralioides HOM05D003304 ORTHO05D003762 5.7e-13 79.3 56 67.9
AL3G18000 Arabidopsis lyrata HOM05D003304 ORTHO05D003762 7.5e-13 79.0 54 70.4
CARHR081490 Cardamine hirsuta HOM05D003304 ORTHO05D003762 7.5e-13 79.0 41 82.9
CARHR182640 Cardamine hirsuta HOM05D003304 ORTHO05D003762 7.5e-13 79.0 47 76.6
Aa31sc105G60 Aethionema arabicum HOM05D003304 ORTHO05D003762 1.3e-12 78.2 57 66.7
C05p60480 Brassica napus HOM05D003304 ORTHO05D003762 1.3e-12 78.2 45 75.6
A05p41260 Brassica napus HOM05D003304 ORTHO05D003762 1.7e-12 77.8 41 80.5
BolC5t34702H Brassica oleracea HOM05D003304 ORTHO05D003762 1.7e-12 77.8 41 80.5
BraA05t22849Z Brassica rapa HOM05D003304 ORTHO05D003762 1.7e-12 77.8 41 80.5
TPR.G31283 Trifolium pratense HOM05D003304 ORTHO05D003762 1.7e-12 77.8 65 67.7
Sp3g05830 Schrenkiella parvula HOM05D003304 ORTHO05D003762 2.8e-12 77.0 52 71.2
BraA01t04408Z Brassica rapa HOM05D003304 ORTHO05D003762 4.9e-12 76.3 71 56.3
Lj6g0014556 Lotus japonicus HOM05D003304 ORTHO05D003762 4.9e-12 76.3 46 76.1
PGR004G2799 Punica granatum HOM05D003304 ORTHO05D003762 4.9e-12 76.3 72 65.3
BcaC09g47926 Brassica carinata HOM05D003304 ORTHO05D003762 6.3e-12 75.9 59 66.1
BolC1t05580H Brassica oleracea HOM05D003304 ORTHO05D003762 6.3e-12 75.9 59 66.1
Migut.N00085 Erythranthe guttata HOM05D003304 ORTHO05D003762 1.1e-11 75.1 48 75.0
GSVIVG01035139001 Vitis vinifera HOM05D003304 ORTHO05D003762 1.1e-11 75.1 44 70.5
CDE02G3640 Ceratophyllum demersum HOM05D003304 ORTHO05D003762 1.8e-11 74.3 62 64.5
Medtr2g436340 Medicago truncatula HOM05D003304 ORTHO05D003762 1.8e-11 74.3 130 46.2
DCAR_027060 Daucus carota HOM05D003304 ORTHO05D003762 3.1e-11 73.6 50 76.0
Nitab4.5_0000570g0270 Nicotiana tabacum HOM05D003304 ORTHO05D003762 3.1e-11 73.6 139 40.3
Nitab4.5_0001233g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 4.1e-11 73.2 60 66.7
Psat1g155200 Pisum sativum HOM05D003304 ORTHO05D003762 4.1e-11 73.2 94 48.9
BNapus_Darmor_BZH_scaffold_117p00150 Brassica napus HOM05D003304 ORTHO05D003762 7.0e-11 72.4 76 51.3
Actinidia40286 Actinidia chinensis HOM05D003304 ORTHO05D003762 9.1e-11 72.0 138 43.5
Nitab4.5_0000895g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 9.1e-11 72.0 61 67.2
CDE09G0254 Ceratophyllum demersum HOM05D003304 ORTHO05D003762 1.2e-10 71.6 62 61.3
Oeu053986.1 Olea europaea HOM05D003304 ORTHO05D003762 1.6e-10 71.2 138 40.6
BcaC05g30564 Brassica carinata HOM05D003304 ORTHO05D003762 2.0e-10 70.9 57 64.9
Peaxi162Scf00246g00127 Petunia axillaris HOM05D003304 ORTHO05D003762 3.5e-10 70.1 61 65.6
MELO3C006676.2 Cucumis melo HOM05D003304 ORTHO05D003762 4.5e-10 69.7 62 62.9
Solyc12g099450.3 Solanum lycopersicum HOM05D003304 ORTHO05D003762 5.9e-10 69.3 45 75.6
Gohir.D09G238900 Gossypium hirsutum HOM05D003304 ORTHO05D003762 7.7e-10 68.9 60 58.3
Gorai.006G261600 Gossypium raimondii HOM05D003304 ORTHO05D003762 7.7e-10 68.9 60 58.3
Sopen12g034120 Solanum pennellii HOM05D003304 ORTHO05D003762 1.0e-09 68.6 41 80.5
HPP92_023378 Vanilla planifolia HOM05D003304 ORTHO05D003762 1.0e-09 68.6 37 81.1
A03p34930 Brassica napus HOM05D003304 ORTHO05D003762 1.3e-09 68.2 44 70.5
BraA03t12673Z Brassica rapa HOM05D003304 ORTHO05D003762 1.3e-09 68.2 44 70.5
Lalb_Chr07g0177821 Lupinus albus HOM05D003304 ORTHO05D003762 1.7e-09 67.8 53 62.3
PSO357G0352 Papaver somniferum HOM05D003304 ORTHO05D003762 1.7e-09 67.8 39 79.5
PGSC0003DMG400004631 Solanum tuberosum HOM05D003304 ORTHO05D003762 1.7e-09 67.8 41 80.5
VMungo1309G2051 Vigna mungo HOM05D003304 ORTHO05D003762 1.7e-09 67.8 55 63.6
C03p42510 Brassica napus HOM05D003304 ORTHO05D003762 2.3e-09 67.4 63 54.0
BolC3t16521H Brassica oleracea HOM05D003304 ORTHO05D003762 2.3e-09 67.4 63 54.0
EL10Ac3g06624 Beta vulgaris HOM05D003304 ORTHO05D003762 2.9e-09 67.0 60 68.3
CAN.G484.45 Capsicum annuum HOM05D003304 ORTHO05D003762 2.9e-09 67.0 62 66.1
CsaV3_3G014790 Cucumis sativus L. HOM05D003304 ORTHO05D003762 2.9e-09 67.0 63 60.3
Hma1.2p1_0147F.1_g065875 Hydrangea macrophylla HOM05D003304 ORTHO05D003762 3.8e-09 66.6 56 67.9
Hma1.2p1_1784F.1_g302143 Hydrangea macrophylla HOM05D003304 ORTHO05D003762 3.8e-09 66.6 56 67.9
Peaxi162Scf00646g00329 Petunia axillaris HOM05D003304 ORTHO05D003762 3.8e-09 66.6 63 63.5
unitig_32.g11868 Utricularia gibba HOM05D003304 ORTHO05D003762 3.8e-09 66.6 62 58.1
Oeu016249.1 Olea europaea HOM05D003304 ORTHO05D003762 5.0e-09 66.2 55 65.5
Eucgr.B01602 Eucalyptus grandis HOM05D003304 ORTHO05D003762 6.6e-09 65.9 34 85.3
SHI00254 Sapria himalayana HOM05D003304 ORTHO05D003762 6.6e-09 65.9 135 41.5
Eucgr.H03942 Eucalyptus grandis HOM05D003304 ORTHO05D003762 1.1e-08 65.1 63 60.3
Gohir.A09G238000 Gossypium hirsutum HOM05D003304 ORTHO05D003762 1.1e-08 65.1 60 56.7
Oeu016250.1 Olea europaea HOM05D003304 ORTHO05D003762 1.9e-08 64.3 55 65.5
PSO170G6833 Papaver somniferum HOM05D003304 ORTHO05D003762 2.5e-08 63.9 51 62.7
SGA_v2.0_scaffold9G04881 Striga asiatica HOM05D003304 ORTHO05D003762 3.3e-08 63.5 43 72.1
SGA_v2.0_scaffold428G51527 Striga asiatica HOM05D003304 ORTHO05D003762 7.2e-08 62.4 55 60.0
DCAR_002474 Daucus carota HOM05D003304 ORTHO05D003762 2.1e-07 60.8 49 63.3
Ca_21485_v3 Cicer arietinum L. HOM05D003304 ORTHO05D003762 2.8e-07 60.5 87 49.4
Glyma.09G043300 Glycine max HOM05D003304 ORTHO05D003762 2.8e-07 60.5 59 54.2
unitig_749.g13390 Utricularia gibba HOM05D003304 ORTHO05D003762 2.8e-07 60.5 53 60.4
Sed0000258 Sechium edule HOM05D003304 ORTHO05D003762 6.1e-07 59.3 61 55.7
SalBow5G3057 Salvia bowleyana HOM05D003304 ORTHO05D003762 8.0e-07 58.9 53 58.5
Glyma.15G149700 Glycine max HOM05D003304 ORTHO05D003762 1.0e-06 58.5 42 64.3
arahy.Tifrunner.gnm1.ann1.IWFQ27 Arachis hypogaea HOM05D003304 ORTHO05D003762 1.4e-06 58.2 47 63.8
unitig_26.g10550 Utricularia gibba HOM05D003304 ORTHO05D003762 1.4e-06 58.2 63 57.1
arahy.Tifrunner.gnm1.ann1.8XU14N Arachis hypogaea HOM05D003304 ORTHO05D003762 2.3e-06 57.4 45 64.4


User provided reference genes

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