Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 2192.2 1092 100.0
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1781.1 1084 81.9
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1757.7 1086 79.9
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1730.7 1102 78.3
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1729.1 1096 78.7
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1726.8 1100 78.5
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1720.7 1092 79.3
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1720.3 1092 78.5
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1719.5 1106 77.6
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1709.1 1095 78.4
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1708.7 1092 78.1
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1708.0 1092 78.6
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1706.4 1095 77.9
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1703.7 1090 78.7
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1703.3 1086 78.0
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1692.9 1101 76.8
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1688.7 1100 76.6
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1685.2 1088 77.1
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1684.5 1092 77.0
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1684.5 1085 77.2
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1682.9 1097 76.8
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1681.8 1095 76.5
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1675.6 1093 76.8
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1672.1 1093 76.7
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1672.1 1095 76.3
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1671.0 1095 76.3
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1667.5 1100 75.3
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1665.6 1184 72.0
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1665.2 1088 76.4
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1664.8 1100 75.6
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1663.7 1095 76.1
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1658.7 1107 74.5
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1658.3 1100 75.5
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1658.3 1095 76.0
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1656.7 1093 75.6
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1656.3 1177 72.0
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1655.6 1095 75.3
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1654.0 1097 75.2
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1651.0 1101 75.9
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1648.6 1095 75.1
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1647.9 1091 75.4
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1647.1 1091 74.4
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1647.1 1091 74.4
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1644.8 1093 74.8
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1644.8 1096 74.7
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1644.4 1095 74.9
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1642.1 1084 75.7
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1642.1 1090 74.7
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1642.1 1094 74.6
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1640.9 1119 73.3
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1638.2 1090 74.5
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1636.3 1097 74.9
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1635.2 1094 74.0
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1628.6 1094 73.6
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1627.8 1089 74.2
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1627.8 1089 74.2
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1624.4 1089 73.9
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1618.2 1089 73.7
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1616.3 1089 73.6
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1615.1 1089 73.6
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1614.0 1086 73.6
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1613.6 1085 73.5
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1613.6 1086 73.5
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1612.4 1091 74.1
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1612.0 1072 74.5
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1611.7 1089 73.6
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1611.7 1100 73.5
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1610.5 1084 74.4
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1609.3 1086 73.1
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1606.7 1086 72.9
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1603.2 1089 73.1
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1600.1 1092 72.6
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1598.6 1087 73.5
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1598.6 1087 73.7
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1597.8 1093 72.7
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1597.4 1100 72.5
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1597.0 1112 72.5
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1596.3 1087 73.5
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1585.1 1093 71.8
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1583.5 1095 73.1
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1576.6 1095 72.1
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1089 72.7
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1574.3 1087 72.9
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1568.1 1085 72.4
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1566.2 1104 72.1
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1565.1 1089 72.4
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1563.9 1119 69.3
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1563.1 1085 71.9
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1559.7 1098 71.5
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1559.7 1108 69.9
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1553.9 1086 70.8
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1552.7 1159 67.3
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1545.0 1090 72.1
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1543.5 1107 69.3
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1532.7 1010 76.4
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1532.7 1090 70.7
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1532.3 1090 69.8
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1530.4 1022 74.9
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1529.6 1005 75.4
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1527.7 1087 69.6
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1521.1 1113 70.6
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1519.6 1086 70.1
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1514.6 1089 69.4
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1489.6 1062 70.0
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1479.5 1023 73.5
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1454.9 1087 68.3
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1446.4 1111 66.2
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1429.8 990 71.7
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1427.9 1088 65.2
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1399.0 1106 62.9
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1353.2 1089 65.7
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1273.5 798 79.6
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1167.5 1095 53.9
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1167.5 1094 53.5
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1147.1 1136 51.5
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1146.3 700 81.3
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1144.4 726 78.9
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1135.9 1093 52.8
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1118.2 682 80.9
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1105.9 1086 51.8
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1100.9 764 72.6
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 1.5e-294 1016.5 843 59.9
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 1.7e-269 933.3 610 76.9
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 3.7e-269 932.2 827 59.1
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.6e-248 863.6 959 48.5
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 6.2e-240 835.1 694 64.0
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 2.6e-230 803.1 510 77.8
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.3e-229 800.8 636 64.3
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.3e-208 731.1 986 45.5
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 1.7e-181 641.0 610 55.6
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 8.0e-163 578.9 439 68.6
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.5e-145 521.5 304 81.6
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 4.1e-135 486.9 386 66.3
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.7e-131 473.4 315 74.0
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 2.1e-91 341.7 288 64.6
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 6.5e-80 303.5 244 63.1
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.1e-63 249.6 205 62.0
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 5.5e-63 247.3 136 81.6
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 2.4e-42 178.7 138 60.9
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 7.5e-36 157.1 184 47.8
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 3.7e-35 154.8 134 59.7
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 5.5e-31 141.0 72 90.3
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 1.2e-30 139.8 108 63.0
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.8e-29 136.0 156 46.8
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 7.8e-25 120.6 94 64.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.9e-23 115.9 84 66.7
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 3.1e-13 82.0 49 71.4
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 5.2e-13 81.3 147 37.4
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 9.8e-12 77.0 42 85.7
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 2.3e-08 65.9 33 90.9
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 3.3e-07 62.0 75 40.0
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 5.6e-07 61.2 38 73.7
GSVIVG01023118001 Vitis vinifera HOM05D002380 ORTHO05D440244 2.8e-06 58.9 41 70.7


User provided reference genes

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