Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1845 Acer truncatum HOM05D007269 ORTHO05D008531 1.9e-90 335.9 181 100.0
Ciclev10032833m.g Citrus clementina HOM05D007269 ORTHO05D008531 8.0e-44 181.0 202 56.9
Potri.015G099800 Populus trichocarpa HOM05D007269 ORTHO05D008531 5.9e-39 164.9 195 52.3
Thecc.03G133000 Theobroma cacao HOM05D007269 ORTHO05D008531 2.1e-36 156.4 196 51.0
Sabra12G0074700 Salix brachista HOM05D001095 ORTHO05D000976 3.4e-34 149.1 187 52.4
Sabra15G0120500 Salix brachista HOM05D007269 ORTHO05D008531 2.2e-33 146.4 176 54.0
COL.COLO4_36213 Corchorus olitorius HOM05D007269 ORTHO05D008531 2.9e-33 146.0 198 49.0
Potri.012G101800 Populus trichocarpa HOM05D007269 ORTHO05D008531 3.7e-33 145.6 191 50.3
Manes.14G048800 Manihot esculenta HOM05D007269 ORTHO05D008531 1.4e-32 143.7 193 49.2
Duzib084G1105 Durio zibethinus HOM05D007269 ORTHO05D008531 1.9e-32 143.3 193 49.7
Duzib068G0517 Durio zibethinus HOM05D007269 ORTHO05D008531 7.0e-32 141.4 182 46.7
QL10p002347 Quercus lobata HOM05D007269 ORTHO05D008531 8.6e-30 134.4 190 51.6
CiPaw.11G004900 Carya illinoinensis HOM05D007269 ORTHO05D008531 8.0e-28 127.9 182 47.8
Aqoxy3G01626 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 1.8e-27 126.7 221 37.1
Nn4g22252 Nelumbo nucifera HOM05D007269 ORTHO05D008531 2.0e-26 123.2 188 44.1
Gorai.008G207700 Gossypium raimondii HOM05D007269 ORTHO05D008531 1.6e-23 113.6 180 47.2
Gohir.D12G192900 Gossypium hirsutum HOM05D007269 ORTHO05D008531 3.5e-23 112.5 180 46.7
Haze_07172 Corylus avellana HOM05D007269 ORTHO05D008531 2.3e-22 109.8 163 44.2
Gohir.A12G190800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 2.3e-22 109.8 180 46.1
CiPaw.06G105600 Carya illinoinensis HOM05D007269 ORTHO05D008531 3.9e-22 109.0 228 37.7
TAR622G0366 Trochodendron aralioides HOM05D007269 ORTHO05D008531 3.3e-21 105.9 169 45.6
Cfa018768 Carpinus fangiana HOM05D007269 ORTHO05D008531 4.3e-21 105.5 156 45.5
Nitab4.5_0002530g0020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 4.3e-21 105.5 211 40.8
Aqoxy5G03286 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 5.6e-21 105.1 201 41.3
TAR374G0918 Trochodendron aralioides HOM05D007269 ORTHO05D008531 9.5e-21 104.4 150 46.7
Nn3g16393 Nelumbo nucifera HOM05D007269 ORTHO05D008531 2.1e-20 103.2 204 39.2
HanXRQChr09g0273431 Helianthus annuus HOM05D007269 ORTHO05D008531 4.7e-20 102.1 190 43.2
CSS0016059 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 1.1e-19 100.9 206 40.3
PGR119G1209 Punica granatum HOM05D007269 ORTHO05D008531 1.8e-19 100.1 193 42.0
CSS0011599 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 3.1e-19 99.4 202 38.1
Nitab4.5_0000021g1020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 8.9e-19 97.8 224 41.5
Lsat_1_v5_gn_4_82360 Lactuca sativa HOM05D007269 ORTHO05D008531 1.5e-18 97.1 198 39.9
Potri.001G059800 Populus trichocarpa HOM05D007269 ORTHO05D008531 1.5e-18 97.1 212 37.7
Lj4g0016206 Lotus japonicus HOM05D007269 ORTHO05D008531 2.0e-18 96.7 195 37.9
Cpa.g.sc4.165 Carica papaya HOM05D007269 ORTHO05D008531 4.4e-18 95.5 183 41.5
HanXRQChr08g0236471 Helianthus annuus HOM05D007269 ORTHO05D008531 4.4e-18 95.5 220 35.5
MSTRG.7284 Avicennia marina HOM05D007269 ORTHO05D008531 1.3e-17 94.0 218 37.6
QL03p051584 Quercus lobata HOM05D007269 ORTHO05D008531 1.7e-17 93.6 229 33.2
ATR0582G094 Amborella trichopoda HOM05D007269 ORTHO05D008531 2.9e-17 92.8 199 37.7
Prupe.5G148200 Prunus persica HOM05D007269 ORTHO05D008531 4.9e-17 92.0 205 39.5
Lalb_Chr07g0183561 Lupinus albus HOM05D007269 ORTHO05D008531 6.4e-17 91.7 194 37.1
CAN.G732.21 Capsicum annuum HOM05D007269 ORTHO05D008531 8.3e-17 91.3 208 37.0
RcHm_v2.0_Chr7g0189701 Rosa chinensis HOM05D007269 ORTHO05D008531 8.3e-17 91.3 215 40.0
Thecc.02G201200 Theobroma cacao HOM05D007269 ORTHO05D008531 1.1e-16 90.9 237 34.6
MD16G1123500 Malus domestica HOM05D007269 ORTHO05D008531 2.4e-16 89.7 228 35.5
Phvul.002G285300 Phaseolus vulgaris HOM05D007269 ORTHO05D008531 2.4e-16 89.7 191 37.2
Dinv23173 Davidia involucrata HOM05D007269 ORTHO05D008531 3.2e-16 89.4 162 44.4
CiPaw.05G106700 Carya illinoinensis HOM05D007269 ORTHO05D008531 5.4e-16 88.6 234 35.0
Rhsim12G0023500 Rhododendron simsii HOM05D007269 ORTHO05D008531 5.4e-16 88.6 147 43.5
HanXRQChr05g0153821 Helianthus annuus HOM05D007269 ORTHO05D008531 7.1e-16 88.2 228 33.3
Manes.13G008500 Manihot esculenta HOM05D007269 ORTHO05D008531 7.1e-16 88.2 215 37.7
PGSC0003DMG400026484 Solanum tuberosum HOM05D007269 ORTHO05D008531 9.2e-16 87.8 216 36.6
Ciclev10032794m.g Citrus clementina HOM05D007269 ORTHO05D008531 1.6e-15 87.0 198 34.8
FvH4_5g08680 Fragaria vesca HOM05D007269 ORTHO05D008531 1.6e-15 87.0 212 39.6
FAN13G1779 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.6e-15 87.0 214 38.3
FAN18G2199 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.6e-15 87.0 212 39.6
MD06G1137900 Malus domestica HOM05D007269 ORTHO05D008531 1.6e-15 87.0 205 40.0
MBI07_g46909_MAGBIO Magnolia biondii HOM05D007269 ORTHO05D008531 2.1e-15 86.7 237 32.9
FAN08G0669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 6.0e-15 85.1 218 39.4
FAN28G2669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.0e-14 84.3 212 37.7
MD14G1153300 Malus domestica HOM05D007269 ORTHO05D008531 2.3e-14 83.2 198 35.9
Sopen03g028190 Solanum pennellii HOM05D007269 ORTHO05D008531 3.0e-14 82.8 194 36.1
Lalb_Chr13g0297191 Lupinus albus HOM05D007269 ORTHO05D008531 3.9e-14 82.4 196 36.7
PSO017G6998 Papaver somniferum HOM05D007269 ORTHO05D008531 3.9e-14 82.4 196 35.7
FAN06G3947 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.1e-13 80.9 206 38.8
Solyc03g097430.1 Solanum lycopersicum HOM05D007269 ORTHO05D008531 1.5e-13 80.5 204 35.3
Migut.M01219 Erythranthe guttata HOM05D007269 ORTHO05D008531 2.5e-13 79.7 222 33.8
RcHm_v2.0_Chr4g0429751 Rosa chinensis HOM05D007269 ORTHO05D008531 5.6e-13 78.6 222 33.3
CANSAT01G1989 Cannabis sativa HOM05D007269 ORTHO05D008531 9.6e-13 77.8 224 32.6
Cc11_g17250 Coffea canephora HOM05D007269 ORTHO05D008531 9.6e-13 77.8 227 32.6
Manes.12G008000 Manihot esculenta HOM05D007269 ORTHO05D008531 9.6e-13 77.8 201 36.3
DCAR_021637 Daucus carota HOM05D007269 ORTHO05D008531 1.2e-12 77.4 218 33.0
Oeu001326.1 Olea europaea HOM05D007269 ORTHO05D008531 1.2e-12 77.4 189 34.9
Oeu001327.1 Olea europaea HOM05D007269 ORTHO05D008531 1.2e-12 77.4 189 34.9
Prupe.1G222200 Prunus persica HOM05D007269 ORTHO05D008531 1.2e-12 77.4 223 32.7
Sc22g0003750 Simmondsia chinensis HOM05D007269 ORTHO05D008531 1.6e-12 77.0 184 36.4
Psat7g036960 Pisum sativum HOM05D007269 ORTHO05D008531 4.7e-12 75.5 200 37.0
VMungo0251G2992 Vigna mungo HOM05D031312 ORTHO05D008531 6.2e-12 75.1 153 38.6
TPR.G28777 Trifolium pratense HOM05D007269 ORTHO05D008531 1.1e-11 74.3 203 34.5
Potri.003G168200 Populus trichocarpa HOM05D007269 ORTHO05D008531 6.8e-11 71.6 122 43.4
CDE05G2305 Ceratophyllum demersum HOM05D007269 ORTHO05D008531 2.0e-10 70.1 185 31.9
CARHR257650 Cardamine hirsuta HOM05D012271 ORTHO05D014413 2.6e-10 69.7 141 39.0
Gohir.D01G020800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 2.6e-10 69.7 106 45.3
Medtr8g096640 Medicago truncatula HOM05D007269 ORTHO05D008531 2.6e-10 69.7 202 35.1
Sabra03G0123300 Salix brachista HOM05D007269 ORTHO05D008531 5.8e-10 68.6 211 32.2
DCAR_021638 Daucus carota HOM05D007269 ORTHO05D008531 7.6e-10 68.2 233 30.9
Oeu001328.1 Olea europaea HOM05D007269 ORTHO05D008531 7.6e-10 68.2 167 34.7
TAR629G3154 Trochodendron aralioides HOM05D007269 ORTHO05D008531 7.6e-10 68.2 124 41.1
Carub.0008s1071 Capsella rubella HOM05D012271 ORTHO05D014413 9.9e-10 67.8 164 31.7
MELO3C022330.2 Cucumis melo HOM05D026927 ORTHO05D008531 9.9e-10 67.8 119 42.0
ECA232G3539 Erigeron canadensis HOM05D007269 ORTHO05D008531 9.9e-10 67.8 179 34.1
FvH4_4g23360 Fragaria vesca HOM05D007269 ORTHO05D008531 1.7e-09 67.0 238 31.1
Rhsim12G0177300 Rhododendron simsii HOM05D007269 ORTHO05D008531 1.7e-09 67.0 141 38.3
Migut.K01007 Erythranthe guttata HOM05D007269 ORTHO05D008531 3.8e-09 65.9 226 33.6
MBI07_g27870_MAGBIO Magnolia biondii HOM05D007269 ORTHO05D008531 3.8e-09 65.9 157 35.0
Oeu012652.1 Olea europaea HOM05D007269 ORTHO05D008531 8.4e-09 64.7 167 37.1
FAN12G4201 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.4e-08 63.9 235 31.1
FAN15G2538 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.4e-08 63.9 155 40.6
PSO017G1627 Papaver somniferum HOM05D007269 ORTHO05D008531 2.4e-08 63.2 152 37.5
Gohir.A01G022800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 5.4e-08 62.0 152 38.2
THA.LOC104825024 Tarenaya hassleriana HOM05D012271 ORTHO05D014413 5.4e-08 62.0 159 37.1
AT5G50610 Arabidopsis thaliana HOM05D012271 ORTHO05D014413 7.1e-08 61.6 149 37.6
AT5G50710 Arabidopsis thaliana HOM05D012271 ORTHO05D014413 7.1e-08 61.6 149 37.6
CsaV3_6G008060 Cucumis sativus L. HOM05D026927 ORTHO05D008531 7.1e-08 61.6 176 36.4
Gorai.002G023300 Gossypium raimondii HOM05D007269 ORTHO05D008531 7.1e-08 61.6 159 35.8
Cfa009391 Carpinus fangiana HOM05D007269 ORTHO05D008531 9.3e-08 61.2 169 33.7
Zm00001eb364140 Zea mays HOM05D007269 ORTHO05D008531 9.3e-08 61.2 189 32.3
Os01g0924200 Oryza sativa ssp. japonica HOM05D007269 ORTHO05D008531 2.7e-07 59.7 185 35.7
GSVIVG01008577001 Vitis vinifera HOM05D007269 ORTHO05D008531 3.5e-07 59.3 67 52.2
Thhalv10015610m.g Eutrema salsugineum HOM05D012271 ORTHO05D014413 4.6e-07 58.9 165 29.1
Rhsim12G0176800 Rhododendron simsii HOM05D007269 ORTHO05D008531 4.6e-07 58.9 154 37.0
FAN17G1902 Fragaria x ananassa HOM05D007269 ORTHO05D008531 7.8e-07 58.2 226 31.9
ClCG03G003920 Citrullus lanatus HOM05D001095 ORTHO05D008531 1.7e-06 57.0 168 36.9
AL8G24870 Arabidopsis lyrata HOM05D012271 ORTHO05D014413 2.3e-06 56.6 149 34.2
MELO3C002374.2 Cucumis melo HOM05D001095 ORTHO05D000976 2.3e-06 56.6 182 34.6
arahy.Tifrunner.gnm1.ann1.0J46GK Arachis hypogaea HOM05D031312 ORTHO05D008531 3.0e-06 56.2 143 35.7
Gohir.A03G054501 Gossypium hirsutum HOM05D037292 ORTHO05D047601 3.9e-06 55.8 84 47.6
Gorai.003G118600 Gossypium raimondii HOM05D037292 ORTHO05D047601 3.9e-06 55.8 85 49.4
Zm00001eb142990 Zea mays HOM05D007269 ORTHO05D008531 8.7e-06 54.7 192 30.2


User provided reference genes

Program Settings