Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.18 Acer truncatum HOM05D007570 ORTHO05D009365 1.2e-163 581.6 1046 100.0
Ciclev10030585m.g Citrus clementina HOM05D007570 ORTHO05D009365 1.2e-80 305.8 343 75.5
Potri.019G043101 Populus trichocarpa HOM05D007570 ORTHO05D009365 1.9e-68 265.4 310 73.2
Sabra19G0053700 Salix brachista HOM05D007570 ORTHO05D009365 5.4e-68 263.8 338 70.4
CiPaw.05G211100 Carya illinoinensis HOM05D007570 ORTHO05D009365 9.6e-65 253.1 302 75.8
TWI34G1038 Tripterygium wilfordii HOM05D007570 ORTHO05D009365 1.9e-60 238.8 305 74.4
Thecc.05G226900 Theobroma cacao HOM05D007570 ORTHO05D009365 4.6e-59 234.2 306 72.9
Manes.08G159400 Manihot esculenta HOM05D007570 ORTHO05D009365 3.7e-56 224.6 326 67.8
MD03G1142100 Malus domestica HOM05D007570 ORTHO05D009365 9.0e-55 219.9 344 63.4
Psat7g112960 Pisum sativum HOM05D007570 ORTHO05D009365 2.9e-53 214.9 327 66.1
Ca_18529_v3 Cicer arietinum L. HOM05D001301 ORTHO05D009365 1.9e-52 212.2 312 67.3
Duzib106G0838 Durio zibethinus HOM05D007570 ORTHO05D009365 2.4e-52 211.8 308 70.1
Lj4g0005287 Lotus japonicus HOM05D007570 ORTHO05D009365 2.1e-51 208.8 342 62.9
Lalb_Chr16g0383631 Lupinus albus HOM05D007570 ORTHO05D009365 4.6e-51 207.6 305 65.9
Gohir.A01G216000 Gossypium hirsutum HOM05D007570 ORTHO05D009365 6.0e-51 207.2 303 68.0
Gohir.D01G204800 Gossypium hirsutum HOM05D007570 ORTHO05D009365 7.9e-51 206.8 305 68.2
Gorai.002G249100 Gossypium raimondii HOM05D007570 ORTHO05D009365 1.8e-50 205.7 305 68.2
TPR.G12015 Trifolium pratense HOM05D007570 ORTHO05D009365 3.0e-50 204.9 327 65.1
Medtr4g089005 Medicago truncatula HOM05D007570 ORTHO05D009365 5.1e-50 204.1 331 65.0
CANSAT78G1681 Cannabis sativa HOM05D007570 ORTHO05D009365 8.7e-50 203.4 352 61.4
FvH4_7g02371 Fragaria vesca HOM05D007570 ORTHO05D009365 5.6e-49 200.7 297 69.7
FAN06G1073 Fragaria x ananassa HOM05D007570 ORTHO05D009365 5.6e-49 200.7 297 69.7
Glyma.07G194900 Glycine max HOM05D007570 ORTHO05D009365 2.8e-48 198.4 341 62.2
Phvul.002G227100 Phaseolus vulgaris HOM05D007570 ORTHO05D009365 5.3e-47 194.1 354 60.7
MD11G1161200 Malus domestica HOM05D007570 ORTHO05D009365 6.9e-47 193.7 183 56.3
Medtr8g064830 Medicago truncatula HOM05D007570 ORTHO05D009365 3.4e-46 191.4 330 63.6
arahy.Tifrunner.gnm1.ann1.3SI8EE Arachis hypogaea HOM05D000112 ORTHO05D009365 5.8e-46 190.7 337 59.9
arahy.Tifrunner.gnm1.ann1.K3ZWQ5 Arachis hypogaea HOM05D000112 ORTHO05D009365 5.8e-46 190.7 337 59.9
CSS0020002 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 8.4e-45 186.8 332 47.3
Eucgr.F03126 Eucalyptus grandis HOM05D007570 ORTHO05D009365 8.4e-45 186.8 304 66.1
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 1.1e-44 186.4 365 39.5
VMungo0251G2923 Vigna mungo HOM05D007570 ORTHO05D009365 5.5e-44 184.1 349 59.6
CSS0011257 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 9.3e-44 183.3 332 48.8
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 1.1e-41 176.4 364 45.9
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 2.5e-41 175.3 137 58.4
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 3.1e-39 168.3 363 39.1
PSO832G0129 Papaver somniferum HOM05D007570 ORTHO05D009365 9.0e-39 166.8 166 51.2
FAN01G3111 Fragaria x ananassa HOM05D007570 ORTHO05D009365 1.2e-38 166.4 137 57.7
Eucgr.A02378 Eucalyptus grandis HOM05D007570 ORTHO05D009365 2.6e-38 165.2 135 58.5
Solyc01g099530.3 Solanum lycopersicum HOM05D001281 ORTHO05D001139 3.4e-38 164.9 363 38.6
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 4.5e-38 164.5 202 46.5
PSO210G6895 Papaver somniferum HOM05D007570 ORTHO05D009365 5.9e-38 164.1 166 50.6
Nitab4.5_0008329g0060 Nicotiana tabacum HOM05D001281 ORTHO05D009365 7.6e-38 163.7 318 40.9
Cfa016108 Carpinus fangiana HOM05D007570 ORTHO05D009365 1.4e-36 159.5 241 75.5
Lsat_1_v5_gn_5_103340 Lactuca sativa HOM05D007570 ORTHO05D009365 1.4e-36 159.5 149 56.4
Aqoxy5G04288 Aquilegia oxysepala HOM05D007570 ORTHO05D009365 2.5e-36 158.7 356 58.1
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 7.2e-36 157.1 159 52.2
Hma1.2p1_1374F.1_g278810 Hydrangea macrophylla HOM05D007570 ORTHO05D009365 1.5e-33 149.4 276 43.8
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 6.3e-32 144.1 326 35.9
RcHm_v2.0_Chr1g0384651 Rosa chinensis HOM05D007570 ORTHO05D009365 1.8e-31 142.5 298 61.4
Ah.10g033640 Amaranthus hybridus HOM05D007570 ORTHO05D009365 2.4e-31 142.1 177 45.2
Hund19367 Selenicereus undatus HOM05D007570 ORTHO05D009365 2.6e-30 138.7 137 51.1
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 7.7e-30 137.1 308 38.0
PGSC0003DMG400024750 Solanum tuberosum HOM05D007570 ORTHO05D009365 7.7e-30 137.1 367 36.5
Actinidia35565 Actinidia chinensis HOM05D007570 ORTHO05D009365 3.8e-29 134.8 273 45.4
Sopen01g043040 Solanum pennellii HOM05D007570 ORTHO05D009365 3.8e-29 134.8 367 37.6
MSTRG.27980 Avicennia marina HOM05D007570 ORTHO05D009365 4.2e-28 131.3 147 46.3
Migut.O00416 Erythranthe guttata HOM05D007570 ORTHO05D009365 7.2e-28 130.6 189 40.2
Migut.N02077 Erythranthe guttata HOM05D007570 ORTHO05D009365 9.4e-28 130.2 323 29.7
Nn1g08626 Nelumbo nucifera HOM05D007570 ORTHO05D009365 4.7e-27 127.9 381 50.9
Thhalv10012597m.g Eutrema salsugineum HOM05D007570 ORTHO05D009365 7.4e-25 120.6 171 40.4
AL6G25570 Arabidopsis lyrata HOM05D007570 ORTHO05D009365 1.3e-24 119.8 171 41.5
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 1.4e-23 116.3 108 50.9
HanXRQChr10g0294781 Helianthus annuus HOM05D007570 ORTHO05D009365 5.3e-23 114.4 108 54.6
CAN.G665.19 Capsicum annuum HOM05D007570 ORTHO05D009365 6.9e-23 114.0 136 43.4
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 1.5e-22 112.8 235 32.3
Sp6g29270 Schrenkiella parvula HOM05D007570 ORTHO05D009365 4.5e-22 111.3 171 39.8
HPP92_020822 Vanilla planifolia HOM05D007570 ORTHO05D009365 4.5e-22 111.3 121 47.1
EL10Ac2g03647 Beta vulgaris HOM05D007570 ORTHO05D009365 7.7e-22 110.5 267 35.2
SalBow3G3428 Salvia bowleyana HOM05D007570 ORTHO05D009365 2.9e-21 108.6 105 51.4
MD00G1202300 Malus domestica HOM05D007570 ORTHO05D009365 6.5e-21 107.5 69 72.5
TAR625G0236 Trochodendron aralioides HOM05D007570 ORTHO05D009365 2.7e-19 102.1 344 51.7
BcaC04g19010 Brassica carinata HOM05D007570 ORTHO05D009365 3.6e-19 101.7 141 41.1
MELO3C024749.2 Cucumis melo HOM05D021906 ORTHO05D009365 1.0e-18 100.1 69 65.2
CsaV3_2G035920 Cucumis sativus L. HOM05D021906 ORTHO05D009365 1.8e-18 99.4 69 63.8
BolC9t59076H Brassica oleracea HOM05D007570 ORTHO05D009365 3.9e-18 98.2 141 41.1
Carub.0006s1294 Capsella rubella HOM05D007570 ORTHO05D009365 5.2e-18 97.8 185 34.1
C09p62380 Brassica napus HOM05D007570 ORTHO05D009365 6.7e-18 97.4 137 40.1
BcaB08g36948 Brassica carinata HOM05D007570 ORTHO05D009365 4.4e-17 94.7 140 38.6
AUR62028022 Chenopodium quinoa HOM05D007570 ORTHO05D009365 4.4e-17 94.7 81 54.3
Oeu043366.2 Olea europaea HOM05D007570 ORTHO05D009365 7.4e-17 94.0 83 50.6
FAN03G2441 Fragaria x ananassa HOM05D002709 ORTHO05D002914 9.7e-17 93.6 106 44.3
A10p23910 Brassica napus HOM05D007570 ORTHO05D009365 1.7e-16 92.8 141 39.0
BraA10t44455Z Brassica rapa HOM05D007570 ORTHO05D009365 1.7e-16 92.8 141 39.0
FAN10G3422 Fragaria x ananassa HOM05D007570 ORTHO05D009365 2.8e-16 92.0 56 71.4
MD00G1202400 Malus domestica HOM05D007570 ORTHO05D009365 4.8e-16 91.3 103 50.5
CARHR198540 Cardamine hirsuta HOM05D007570 ORTHO05D009365 6.3e-16 90.9 171 34.5
AT5G14770 Arabidopsis thaliana HOM05D007570 ORTHO05D009365 2.4e-15 89.0 171 35.1
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 3.1e-15 88.6 63 66.7
GSVIVG01013840001 Vitis vinifera HOM05D007570 ORTHO05D009365 2.7e-11 75.5 69 52.2
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 3.6e-11 75.1 127 30.7
Lj5C430G7 Lonicera japonica HOM05D007570 ORTHO05D009365 2.3e-10 72.4 159 35.2
Aa31LG11G14690 Aethionema arabicum HOM05D007570 ORTHO05D009365 1.5e-09 69.7 68 45.6
AUR62020702 Chenopodium quinoa HOM05D007570 ORTHO05D009365 2.6e-09 68.9 66 53.0
FAN10G4006 Fragaria x ananassa HOM05D007570 ORTHO05D009365 2.6e-09 68.9 69 55.1
CSS0000495 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 2.8e-08 65.5 146 30.1
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 2.8e-08 65.5 146 30.1
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 3.7e-08 65.1 140 28.6
ATR0680G349 Amborella trichopoda HOM05D007570 ORTHO05D009365 4.8e-08 64.7 263 55.5
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 8.2e-08 63.9 136 26.5
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 1.1e-07 63.5 146 30.8
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 1.1e-07 63.5 136 29.4
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 1.8e-07 62.8 123 31.7
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 1.8e-07 62.8 128 31.2
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 2.4e-07 62.4 136 28.7
Haze_00350 Corylus avellana HOM05D007570 ORTHO05D009365 2.4e-07 62.4 91 45.1
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 3.1e-07 62.0 136 28.7
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 3.1e-07 62.0 168 30.4
Sabra10G0181800 Salix brachista HOM05D002453 ORTHO05D002107 3.1e-07 62.0 123 30.1
CDE06G1092 Ceratophyllum demersum HOM05D007570 ORTHO05D008530 4.1e-07 61.6 224 65.2
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 4.1e-07 61.6 124 29.8
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 5.3e-07 61.2 145 29.0
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 5.3e-07 61.2 145 27.6
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 5.3e-07 61.2 146 28.1
Dinv41707 Davidia involucrata HOM05D000001 ORTHO05D000003 5.3e-07 61.2 120 31.7
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 5.3e-07 61.2 45 55.6
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 5.3e-07 61.2 124 30.6
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 5.3e-07 61.2 124 30.6
arahy.Tifrunner.gnm1.ann1.9J2UZB Arachis hypogaea HOM05D021906 ORTHO05D009365 7.0e-07 60.8 53 56.6
Ciclev10031158m.g Citrus clementina HOM05D004851 ORTHO05D006091 7.0e-07 60.8 60 53.3
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 7.0e-07 60.8 145 28.3
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 9.1e-07 60.5 214 27.6
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 9.1e-07 60.5 138 26.8
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 1.2e-06 60.1 146 29.5
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 1.2e-06 60.1 123 28.5
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 1.6e-06 59.7 146 28.1
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 1.6e-06 59.7 146 28.1
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 1.6e-06 59.7 146 26.7
Actinidia04897 Actinidia chinensis HOM05D002453 ORTHO05D002107 2.0e-06 59.3 146 26.7
CiPaw.11G043600 Carya illinoinensis HOM05D002453 ORTHO05D002107 2.0e-06 59.3 145 29.0
MD11G1161100 Malus domestica HOM05D007570 ORTHO05D009365 2.0e-06 59.3 45 57.8
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 2.7e-06 58.9 103 33.0
FAN20G2333 Fragaria x ananassa HOM05D006858 ORTHO05D008767 2.7e-06 58.9 84 36.9
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 2.7e-06 58.9 136 31.6
AagrBONN_evm.TU.Sc2ySwM_344.2673 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-06 58.5 169 27.2
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 3.5e-06 58.5 146 26.7
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 3.5e-06 58.5 146 26.7
SalBow3G4252 Salvia bowleyana HOM05D007570 ORTHO05D009365 3.5e-06 58.5 44 50.0
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 4.5e-06 58.2 146 26.7
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 5.9e-06 57.8 104 30.8


User provided reference genes

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