Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 7.5e-222 773.5 373 100.0
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 8.8e-146 520.8 364 72.8
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 9.4e-132 474.2 396 64.1
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 7.5e-129 464.5 389 63.5
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 3.8e-125 452.2 393 59.0
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 1.2e-123 447.2 379 59.9
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 1.5e-121 440.3 381 59.1
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 1.4e-119 433.7 390 57.9
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 2.0e-118 429.9 395 57.5
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.7e-118 429.5 378 58.7
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.9e-117 426.0 389 57.6
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 8.6e-117 424.5 379 59.4
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 3.6e-115 419.1 389 57.6
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 3.6e-115 419.1 385 57.9
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 1.8e-114 416.8 392 57.1
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 1.8e-114 416.8 389 59.1
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 8.9e-114 414.5 382 56.5
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 7.5e-113 411.4 393 56.5
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 7.5e-113 411.4 393 56.5
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 3.7e-112 409.1 388 56.2
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 1.8e-111 406.8 391 57.3
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 4.1e-111 405.6 347 59.9
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 5.4e-111 405.2 382 55.5
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 7.0e-111 404.8 363 59.0
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 2.7e-110 402.9 392 54.3
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 2.7e-110 402.9 382 58.6
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 3.5e-110 402.5 391 54.5
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 1.0e-109 401.0 353 57.2
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 1.3e-109 400.6 366 55.5
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 1.7e-109 400.2 351 57.5
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 2.5e-108 396.4 353 56.7
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 3.3e-108 396.0 387 54.0
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 8.9e-106 387.9 358 55.3
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 8.9e-106 387.9 358 54.7
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 8.9e-106 387.9 359 54.9
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 2.6e-105 386.3 362 58.0
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 3.4e-105 386.0 390 52.3
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 6.4e-104 381.7 361 52.1
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 6.0e-102 375.2 393 51.4
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 6.0e-102 375.2 401 52.1
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 1.7e-101 373.6 400 50.8
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 3.0e-101 372.9 354 55.9
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 6.6e-101 371.7 367 52.6
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 3.3e-100 369.4 360 52.8
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 9.5e-100 367.9 408 50.5
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 9.5e-100 367.9 386 50.8
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.1e-98 364.4 308 60.4
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 2.3e-98 363.2 381 51.2
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 6.8e-98 361.7 463 46.4
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 8.9e-98 361.3 351 52.7
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 7.5e-97 358.2 356 51.1
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 7.5e-97 358.2 372 51.6
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 9.9e-97 357.8 379 50.4
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 9.9e-97 357.8 368 50.3
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 1.7e-96 357.1 356 50.6
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 2.2e-96 356.7 371 51.2
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 3.7e-96 355.9 356 50.6
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 4.9e-96 355.5 365 50.7
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 8.3e-96 354.8 371 49.1
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 1.4e-95 354.0 351 51.6
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 2.4e-95 353.2 364 50.3
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 2.1e-94 350.1 352 49.4
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 2.7e-94 349.7 379 49.1
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 1.0e-93 347.8 358 49.4
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 1.3e-93 347.4 356 50.3
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 5.1e-93 345.5 372 49.7
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 8.6e-93 344.7 368 50.3
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 3.3e-92 342.8 372 49.5
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 1.6e-91 340.5 364 50.0
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 2.1e-91 340.1 379 49.3
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 4.0e-90 335.9 370 50.5
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 7.6e-89 331.6 378 48.4
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 7.6e-89 331.6 376 50.0
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 2.9e-88 329.7 374 48.1
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 4.9e-88 328.9 358 48.0
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 3.5e-86 322.8 367 49.6
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 6.0e-86 322.0 336 48.2
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 1.7e-85 320.5 359 48.2
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.1e-84 317.8 421 45.6
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 9.6e-84 314.7 376 44.4
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 8.1e-83 311.6 359 44.6
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 2.6e-81 306.6 377 46.9
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 1.9e-79 300.4 314 49.0
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 8.7e-77 291.6 310 46.8
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 1.1e-76 291.2 386 42.7
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 1.5e-73 280.8 336 43.8
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 2.4e-71 273.5 257 57.2
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 3.0e-69 266.5 352 39.5
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 5.1e-69 265.8 408 41.7
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 2.5e-68 263.5 267 54.7
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 3.3e-68 263.1 482 35.1
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 2.4e-63 246.9 181 65.7
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.9e-60 237.3 266 48.5
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.7e-59 233.0 179 63.7
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.0e-56 224.9 293 46.1
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 2.9e-56 223.4 292 42.8
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 1.6e-54 217.6 297 40.1
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 4.6e-54 216.1 181 58.6
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 5.7e-52 209.1 324 38.9
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 2.2e-51 207.2 319 37.0
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.4e-50 204.5 236 47.0
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 9.0e-50 201.8 234 43.6
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 5.0e-40 169.5 158 55.7
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 4.2e-39 166.4 328 35.7
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 4.2e-39 166.4 216 42.6
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.2e-38 164.9 129 65.1
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 1.1e-28 131.7 245 29.0
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 2.0e-28 131.0 257 33.5
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 4.8e-27 126.3 148 44.6
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 1.3e-24 118.2 131 48.1
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 2.9e-24 117.1 199 32.7
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.6e-22 110.2 239 32.6
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 5.2e-21 106.3 127 45.7
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 1.8e-18 97.8 116 42.2
Gohir.D07G075451 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.6e-14 83.6 84 52.4
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.6e-14 83.6 84 52.4
Gohir.D07G137350 Gossypium hirsutum HOM05D006624 ORTHO05D008209 6.1e-14 82.8 84 52.4
Gohir.D08G202425 Gossypium hirsutum HOM05D006624 ORTHO05D008209 8.0e-14 82.4 84 52.4
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 2.6e-12 77.4 72 47.2
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 5.7e-12 76.3 108 38.0
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.3e-08 65.1 86 39.5
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.9e-07 61.2 37 62.2
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 4.2e-07 60.1 50 50.0
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.6e-06 57.0 40 55.0


User provided reference genes

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