Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1763 Acer truncatum HOM05D006869 ORTHO05D008641 2.4e-64 248.8 137 100.0
Ciclev10033051m.g Citrus clementina HOM05D006869 ORTHO05D008641 1.2e-44 183.3 136 77.9
CSS0028384 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 3.3e-42 175.3 117 82.1
CSS0030709 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 3.3e-42 175.3 117 82.1
Manes.15G174500 Manihot esculenta HOM05D006869 ORTHO05D008641 1.3e-41 173.3 141 73.8
COL.COLO4_17099 Corchorus olitorius HOM05D006869 ORTHO05D008641 2.8e-41 172.2 138 70.3
Potri.001G145500 Populus trichocarpa HOM05D006869 ORTHO05D008641 6.3e-41 171.0 124 75.0
TWI15G0987 Tripterygium wilfordii HOM05D006869 ORTHO05D008641 2.4e-40 169.1 138 73.9
RcHm_v2.0_Chr7g0208861 Rosa chinensis HOM05D006869 ORTHO05D008641 3.4e-39 165.2 140 70.7
Prupe.5G042800 Prunus persica HOM05D006869 ORTHO05D008641 5.9e-39 164.5 134 70.9
Thecc.03G232900 Theobroma cacao HOM05D006869 ORTHO05D008641 3.8e-38 161.8 135 71.9
CiPaw.12G061200 Carya illinoinensis HOM05D006869 ORTHO05D008641 1.4e-37 159.8 108 80.6
Duzib205G1446 Durio zibethinus HOM05D006869 ORTHO05D008641 1.4e-37 159.8 133 69.9
Cpa.g.sc6.427 Carica papaya HOM05D006869 ORTHO05D008641 2.5e-37 159.1 124 74.2
Sopen06g021250 Solanum pennellii HOM05D006869 ORTHO05D008641 2.5e-37 159.1 137 68.6
GSVIVG01013242001 Vitis vinifera HOM05D006869 ORTHO05D008641 3.2e-37 158.7 108 78.7
MD06G1029000 Malus domestica HOM05D006869 ORTHO05D008641 9.4e-37 157.1 116 75.9
Actinidia09229 Actinidia chinensis HOM05D002067 ORTHO05D002244 1.2e-36 156.8 126 70.6
PGSC0003DMG400026597 Solanum tuberosum HOM05D006869 ORTHO05D008641 1.6e-36 156.4 137 67.9
FvH4_5g21430 Fragaria vesca HOM05D006869 ORTHO05D008641 6.1e-36 154.5 137 67.9
CiPaw.11G089700 Carya illinoinensis HOM05D006869 ORTHO05D008641 1.0e-35 153.7 116 75.0
Sc22g0001440 Simmondsia chinensis HOM05D006869 ORTHO05D008641 1.0e-35 153.7 120 71.7
TAR375G0341 Trochodendron aralioides HOM05D006869 ORTHO05D008641 1.0e-35 153.7 115 75.7
MSTRG.17527 Avicennia marina HOM05D006869 ORTHO05D008641 3.0e-35 152.1 114 71.9
Hma1.2p1_0414F.1_g147870 Hydrangea macrophylla HOM05D006869 ORTHO05D008641 3.0e-35 152.1 110 76.4
Lj3g0015338 Lotus japonicus HOM05D006869 ORTHO05D008641 3.0e-35 152.1 118 72.9
Phvul.005G061500 Phaseolus vulgaris HOM05D006869 ORTHO05D008641 5.1e-35 151.4 112 74.1
TPR.G26622 Trifolium pratense HOM05D006869 ORTHO05D008641 6.7e-35 151.0 124 69.4
FAN08G2623 Fragaria x ananassa HOM05D006869 ORTHO05D008641 8.8e-35 150.6 146 65.1
Sabra01G0114100 Salix brachista HOM05D006869 ORTHO05D008641 1.1e-34 150.2 155 58.7
Ca_03396_v3 Cicer arietinum L. HOM05D006869 ORTHO05D008641 1.5e-34 149.8 120 70.0
FAN04G2266 Fragaria x ananassa HOM05D006869 ORTHO05D008641 2.0e-34 149.4 143 65.7
Gohir.A09G198300 Gossypium hirsutum HOM05D006869 ORTHO05D008641 2.0e-34 149.4 134 66.4
FAN18G0870 Fragaria x ananassa HOM05D006869 ORTHO05D008641 2.6e-34 149.1 143 65.0
PGR042G2539 Punica granatum HOM05D006869 ORTHO05D008641 3.3e-34 148.7 121 70.2
Glyma.13G259900 Glycine max HOM05D006869 ORTHO05D008641 4.4e-34 148.3 112 74.1
Medtr2g071640 Medicago truncatula HOM05D006869 ORTHO05D008641 4.4e-34 148.3 140 62.9
PSO832G0919 Papaver somniferum HOM05D006869 ORTHO05D008641 7.4e-34 147.5 130 63.8
PSO675G8621 Papaver somniferum HOM05D006869 ORTHO05D008641 1.3e-33 146.7 130 63.8
PSO732G0001 Papaver somniferum HOM05D006869 ORTHO05D008641 1.7e-33 146.4 130 63.8
FAN13G1368 Fragaria x ananassa HOM05D006869 ORTHO05D008641 2.2e-33 146.0 114 71.9
Aqoxy3G02480 Aquilegia oxysepala HOM05D006869 ORTHO05D008641 2.8e-33 145.6 129 66.7
Gohir.D09G192900 Gossypium hirsutum HOM05D006869 ORTHO05D008641 2.8e-33 145.6 134 65.7
CANSAT21G0218 Cannabis sativa HOM05D006869 ORTHO05D008641 3.7e-33 145.2 127 65.4
MELO3C003378.2 Cucumis melo HOM05D006869 ORTHO05D008641 3.7e-33 145.2 126 64.3
CsaV3_1G016990 Cucumis sativus L. HOM05D006869 ORTHO05D008641 3.7e-33 145.2 126 65.1
CsaV3_3G049460 Cucumis sativus L. HOM05D006869 ORTHO05D008641 3.7e-33 145.2 126 65.1
Migut.D00490 Erythranthe guttata HOM05D006869 ORTHO05D008641 3.7e-33 145.2 132 64.4
Lalb_Chr25g0285441 Lupinus albus HOM05D006869 ORTHO05D008641 6.3e-33 144.4 114 70.2
VMungo1080G1596 Vigna mungo HOM05D006869 ORTHO05D008641 1.8e-32 142.9 140 60.7
Nn1g00590 Nelumbo nucifera HOM05D006869 ORTHO05D008641 4.1e-32 141.7 129 66.7
Eucgr.E00305 Eucalyptus grandis HOM05D006869 ORTHO05D008641 7.0e-32 141.0 103 73.8
ECA233G4479 Erigeron canadensis HOM05D006869 ORTHO05D008641 9.1e-32 140.6 122 65.6
Nitab4.5_0003100g0080 Nicotiana tabacum HOM05D006869 ORTHO05D008641 7.7e-31 137.5 149 61.1
Hund14421 Selenicereus undatus HOM05D006869 ORTHO05D008641 1.3e-30 136.7 122 68.0
arahy.Tifrunner.gnm1.ann1.TLF144 Arachis hypogaea HOM05D006869 ORTHO05D008641 2.2e-30 136.0 131 61.8
arahy.Tifrunner.gnm1.ann1.U4TMK5 Arachis hypogaea HOM05D006869 ORTHO05D008641 3.8e-30 135.2 119 63.9
Actinidia14827 Actinidia chinensis HOM05D006869 ORTHO05D008641 1.1e-29 133.7 125 66.4
arahy.Tifrunner.gnm1.ann1.4F5UFQ Arachis hypogaea HOM05D006869 ORTHO05D008641 1.1e-29 133.7 131 61.1
ClCG09G012310 Citrullus lanatus HOM05D006869 ORTHO05D008641 1.9e-29 132.9 133 57.1
DCAR_005606 Daucus carota HOM05D006869 ORTHO05D008641 4.2e-29 131.7 150 54.0
Glyma.15G248100 Glycine max HOM05D006869 ORTHO05D008641 9.4e-29 130.6 116 67.2
THA.LOC104798477 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 2.1e-28 129.4 127 59.8
Gorai.006G215800 Gossypium raimondii HOM05D006869 ORTHO05D008641 2.7e-28 129.0 171 52.0
HPP92_026375 Vanilla planifolia HOM05D006869 ORTHO05D008641 4.7e-28 128.3 119 60.5
DCAR_024975 Daucus carota HOM05D006869 ORTHO05D008641 1.0e-27 127.1 123 61.8
HanXRQChr08g0227941 Helianthus annuus HOM05D006869 ORTHO05D008641 1.0e-27 127.1 109 66.1
A09p33790 Brassica napus HOM05D006869 ORTHO05D008641 3.0e-27 125.6 130 59.2
BraA09t38929Z Brassica rapa HOM05D006869 ORTHO05D008641 3.0e-27 125.6 130 59.2
BcaC05g27275 Brassica carinata HOM05D006869 ORTHO05D008641 3.9e-27 125.2 130 59.2
BolC5t31911H Brassica oleracea HOM05D006869 ORTHO05D008641 3.9e-27 125.2 130 59.2
C05p31830 Brassica napus HOM05D006869 ORTHO05D008641 8.8e-27 124.0 126 60.3
BcaB07g32921 Brassica carinata HOM05D006869 ORTHO05D008641 1.1e-26 123.6 130 58.5
AT1G32370 Arabidopsis thaliana HOM05D006869 ORTHO05D008641 2.6e-26 122.5 121 62.0
THA.LOC104798593 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 2.6e-26 122.5 121 58.7
Thhalv10009100m.g Eutrema salsugineum HOM05D006869 ORTHO05D008641 5.7e-26 121.3 129 58.9
Carub.0001s3075 Capsella rubella HOM05D006869 ORTHO05D008641 7.4e-26 120.9 128 59.4
Sp1g28510 Schrenkiella parvula HOM05D006869 ORTHO05D008641 2.2e-25 119.4 129 57.4
unitig_746.g26748 Utricularia gibba HOM05D006869 ORTHO05D008641 2.8e-25 119.0 119 59.7
Dinv25192 Davidia involucrata HOM05D006869 ORTHO05D008641 3.7e-25 118.6 142 54.9
AL1G46570 Arabidopsis lyrata HOM05D006869 ORTHO05D008641 1.1e-24 117.1 126 58.7
CARHR031750 Cardamine hirsuta HOM05D006869 ORTHO05D008641 1.1e-24 117.1 121 59.5
Os02g0279600 Oryza sativa ssp. japonica HOM05D006869 ORTHO05D008641 2.4e-24 115.9 109 61.5
Aa31LG2G13630 Aethionema arabicum HOM05D006869 ORTHO05D008641 5.3e-24 114.8 126 57.9
Zm00001eb024260 Zea mays HOM05D006869 ORTHO05D008641 1.6e-23 113.2 131 53.4
SGA_v2.0_scaffold94G28479 Striga asiatica HOM05D006869 ORTHO05D008641 2.0e-23 112.8 91 72.5
Nitab4.5_0004658g0060 Nicotiana tabacum HOM05D006869 ORTHO05D008641 7.7e-23 110.9 123 58.5
Oeu015441.1 Olea europaea HOM05D006869 ORTHO05D008641 3.8e-22 108.6 87 69.0
THA.LOC104822843 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 8.5e-22 107.5 101 61.4
vmacro14155 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 1.1e-21 107.1 75 72.0
MBI04_g13865_MAGBIO Magnolia biondii HOM05D006869 ORTHO05D008641 7.2e-21 104.4 75 70.7
Rhsim07G0123600 Rhododendron simsii HOM05D006869 ORTHO05D008641 9.4e-21 104.0 130 52.3
Peaxi162Scf00497g00098 Petunia axillaris HOM05D006869 ORTHO05D008641 1.2e-20 103.6 71 74.6
SEGI_28722 Sequoiadendron giganteum HOM05D006869 ORTHO05D008641 2.1e-20 102.8 98 61.2
ATR0049G078 Amborella trichopoda HOM05D006869 ORTHO05D008641 6.1e-20 101.3 91 64.8
EL10Ac5g12174 Beta vulgaris HOM05D006869 ORTHO05D008641 2.3e-19 99.4 66 75.8
Lsat_1_v5_gn_6_67180 Lactuca sativa HOM05D006869 ORTHO05D008641 2.3e-19 99.4 66 75.8
Sed0006536 Sechium edule HOM05D006869 ORTHO05D008641 4.0e-19 98.6 87 62.1
Cc08_g02310 Coffea canephora HOM05D006869 ORTHO05D008641 5.2e-19 98.2 75 66.7
SalBow6G5905 Salvia bowleyana HOM05D006869 ORTHO05D008641 5.7e-18 94.7 82 62.2
Ah.07g200090 Amaranthus hybridus HOM05D006869 ORTHO05D008641 4.8e-17 91.7 70 64.3
Psat1g009440 Pisum sativum HOM05D006869 ORTHO05D008641 2.9e-14 82.4 77 64.9
AagrBONN_evm.TU.Sc2ySwM_228.2858 Anthoceros agrestis HOM05D006869 ORTHO05D008641 4.2e-13 78.6 100 47.0
Haze_08288 Corylus avellana HOM05D006869 ORTHO05D008641 4.7e-12 75.1 42 90.5
BolC5t32616H Brassica oleracea HOM05D006869 ORTHO05D008641 8.0e-12 74.3 90 54.4
BcaC05g27873 Brassica carinata HOM05D006869 ORTHO05D008641 1.0e-11 73.9 123 48.0
C05p38760 Brassica napus HOM05D006869 ORTHO05D008641 1.0e-11 73.9 123 48.0
Dinv28924 Davidia involucrata HOM05D002067 ORTHO05D002244 1.4e-11 73.6 42 88.1
PGR142G3578 Punica granatum HOM05D006869 ORTHO05D008641 2.6e-10 69.3 47 70.2
Mapoly0009s0146 Marchantia polymorpha HOM05D006869 ORTHO05D008641 3.4e-10 68.9 99 41.4
vmacro23515 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 3.4e-10 68.9 44 77.3
Zm00001eb390630 Zea mays HOM05D006869 ORTHO05D008641 4.1e-08 62.0 52 65.4


User provided reference genes

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