Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1738 Acer truncatum HOM05D007324 ORTHO05D007884 7.1e-60 233.8 123 100.0
Ciclev10033018m.g Citrus clementina HOM05D007324 ORTHO05D007884 9.0e-31 137.1 141 61.7
Eucgr.E00290 Eucalyptus grandis HOM05D007324 ORTHO05D007884 3.9e-26 121.7 139 55.4
Sopen06g021310 Solanum pennellii HOM05D007324 ORTHO05D007884 1.1e-25 120.2 123 56.9
Actinidia14815 Actinidia chinensis HOM05D007324 ORTHO05D007884 1.5e-25 119.8 116 62.1
ECA240G0465 Erigeron canadensis HOM05D007324 ORTHO05D007884 4.3e-25 118.2 126 59.5
Solyc06g061110.2 Solanum lycopersicum HOM05D007324 ORTHO05D007884 7.4e-25 117.5 123 56.1
Glyma.17G155000 Glycine max HOM05D007324 ORTHO05D007884 1.6e-24 116.3 133 55.6
PGR042G1904 Punica granatum HOM05D007324 ORTHO05D007884 1.6e-24 116.3 128 54.7
Glyma.05G112000 Glycine max HOM05D007324 ORTHO05D007884 3.1e-23 112.1 131 52.7
HanXRQChr02g0043531 Helianthus annuus HOM05D007324 ORTHO05D007884 9.0e-23 110.5 119 56.3
arahy.Tifrunner.gnm1.ann1.0E68DR Arachis hypogaea HOM05D007324 ORTHO05D007884 2.2e-21 105.9 119 56.3
arahy.Tifrunner.gnm1.ann1.69TWVD Arachis hypogaea HOM05D007324 ORTHO05D007884 2.2e-21 105.9 119 56.3
Migut.E01386 Erythranthe guttata HOM05D007324 ORTHO05D007884 2.2e-21 105.9 113 53.1
PGSC0003DMG400002093 Solanum tuberosum HOM05D007324 ORTHO05D007884 2.2e-21 105.9 123 53.7
CSS0048146 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 2.9e-21 105.5 127 53.5
Oeu047787.1 Olea europaea HOM05D007324 ORTHO05D007884 2.9e-21 105.5 118 53.4
Lj2A242T77 Lonicera japonica HOM05D007324 ORTHO05D007884 4.2e-20 101.7 117 56.4
CSS0008196 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 5.5e-20 101.3 127 52.0
CiPaw.11G092000 Carya illinoinensis HOM05D007324 ORTHO05D007884 5.5e-20 101.3 126 54.8
HanXRQChr03g0084061 Helianthus annuus HOM05D007324 ORTHO05D007884 5.5e-20 101.3 127 52.0
Lsat_1_v5_gn_6_78560 Lactuca sativa HOM05D007324 ORTHO05D007884 9.3e-20 100.5 146 47.3
CAN.G201.20 Capsicum annuum HOM05D007324 ORTHO05D007884 4.6e-19 98.2 137 50.4
Lalb_Chr16g0386011 Lupinus albus HOM05D007324 ORTHO05D007884 4.3e-17 91.7 113 52.2
Haze_08257 Corylus avellana HOM05D007324 ORTHO05D007884 1.7e-16 89.7 112 54.5
Phvul.003G230300 Phaseolus vulgaris HOM05D007324 ORTHO05D007884 2.8e-16 89.0 111 53.2
PSO478G0244 Papaver somniferum HOM05D007324 ORTHO05D007884 4.8e-16 88.2 92 57.6
Psat4g078840 Pisum sativum HOM05D007324 ORTHO05D007884 8.2e-16 87.4 116 49.1
A08p09020 Brassica napus HOM05D007324 ORTHO05D007884 1.8e-15 86.3 100 52.0
BraA08t32903Z Brassica rapa HOM05D007324 ORTHO05D007884 1.8e-15 86.3 100 52.0
Cfa012419 Carpinus fangiana HOM05D007324 ORTHO05D007884 1.8e-15 86.3 118 50.0
Peaxi162Scf00615g00021 Petunia axillaris HOM05D007324 ORTHO05D007884 1.8e-15 86.3 124 46.8
PSO782G2910 Papaver somniferum HOM05D007324 ORTHO05D007884 3.1e-15 85.5 92 56.5
BolC8t47935H Brassica oleracea HOM05D007324 ORTHO05D007884 4.1e-15 85.1 100 52.0
Thhalv10009848m.g Eutrema salsugineum HOM05D007324 ORTHO05D007884 4.1e-15 85.1 114 48.2
MD06G1032700 Malus domestica HOM05D007324 ORTHO05D007884 4.1e-15 85.1 81 61.7
PSO782G1330 Papaver somniferum HOM05D007324 ORTHO05D007884 1.2e-14 83.6 101 53.5
SGA_v2.0_scaffold144G35830 Striga asiatica HOM05D007324 ORTHO05D007884 1.2e-14 83.6 107 48.6
Gohir.D08G178000 Gossypium hirsutum HOM05D007324 ORTHO05D007884 1.5e-14 83.2 119 47.1
Gorai.004G186200 Gossypium raimondii HOM05D007324 ORTHO05D007884 2.0e-14 82.8 121 46.3
Medtr4g098480 Medicago truncatula HOM05D007324 ORTHO05D007884 4.5e-14 81.6 111 50.5
CDE12G0317 Ceratophyllum demersum HOM05D007324 ORTHO05D007884 5.9e-14 81.3 83 55.4
Gohir.A08G157700 Gossypium hirsutum HOM05D007324 ORTHO05D007884 7.7e-14 80.9 119 47.1
Cpa.g.sc18.65 Carica papaya HOM05D007324 ORTHO05D007884 1.3e-13 80.1 98 55.1
TWI81G0167 Tripterygium wilfordii HOM05D007324 ORTHO05D007884 1.7e-13 79.7 116 48.3
BcaB04g17953 Brassica carinata HOM05D007324 ORTHO05D007884 3.8e-13 78.6 100 50.0
CSS0050429 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 3.8e-13 78.6 120 43.3
MBI04_g22943_MAGBIO Magnolia biondii HOM05D007324 ORTHO05D007884 3.8e-13 78.6 103 51.5
Cc08_g02520 Coffea canephora HOM05D007324 ORTHO05D007884 2.5e-12 75.9 104 51.0
CsaV3_3G001850 Cucumis sativus L. HOM05D007324 ORTHO05D007884 7.2e-12 74.3 122 45.1
DCAR_005623 Daucus carota HOM05D007324 ORTHO05D007884 1.6e-11 73.2 117 42.7
Nitab4.5_0008428g0010 Nicotiana tabacum HOM05D007324 ORTHO05D007884 1.6e-11 73.2 124 42.7
Rhsim07G0125700 Rhododendron simsii HOM05D007324 ORTHO05D007884 2.7e-11 72.4 126 44.4
TPR.G29033 Trifolium pratense HOM05D007324 ORTHO05D007884 2.7e-11 72.4 126 42.9
Ah.07g200240 Amaranthus hybridus HOM05D007324 ORTHO05D007884 4.7e-11 71.6 76 55.3
BolC5t31929H Brassica oleracea HOM05D007324 ORTHO05D007884 2.3e-10 69.3 100 48.0
Ca_22071_v3 Cicer arietinum L. HOM05D007324 ORTHO05D007884 3.0e-10 68.9 109 45.0
FvH4_5g21830 Fragaria vesca HOM05D007324 ORTHO05D007884 3.0e-10 68.9 77 54.5
Actinidia09218 Actinidia chinensis HOM05D007324 ORTHO05D007884 5.1e-10 68.2 116 43.1
FvH4_5g21820 Fragaria vesca HOM05D031477 ORTHO05D007884 6.7e-10 67.8 113 46.9
COL.COLO4_17062 Corchorus olitorius HOM05D007324 ORTHO05D007884 8.8e-10 67.4 147 38.1
Nn6g33613 Nelumbo nucifera HOM05D007324 ORTHO05D007884 8.8e-10 67.4 129 45.0
Manes.15G168800 Manihot esculenta HOM05D007324 ORTHO05D007884 1.1e-09 67.0 74 54.1
MELO3C032260.2 Cucumis melo HOM05D007324 ORTHO05D007884 1.5e-09 66.6 134 42.5
FAN18G2652 Fragaria x ananassa HOM05D007324 ORTHO05D007884 2.6e-09 65.9 77 53.2
C05p32030 Brassica napus HOM05D007324 ORTHO05D007884 3.3e-09 65.5 100 47.0
FAN04G2965 Fragaria x ananassa HOM05D007324 ORTHO05D007884 4.4e-09 65.1 77 51.9
FAN13G0501 Fragaria x ananassa HOM05D007324 ORTHO05D007884 4.4e-09 65.1 123 41.5
Hma1.2p1_0585F.1_g183650 Hydrangea macrophylla HOM05D007324 ORTHO05D007884 5.7e-09 64.7 94 47.9
C05p32110 Brassica napus HOM05D007324 ORTHO05D007884 7.4e-09 64.3 131 41.2
BolC5t31940H Brassica oleracea HOM05D007324 ORTHO05D007884 7.4e-09 64.3 131 41.2
Prupe.5G039400 Prunus persica HOM05D007324 ORTHO05D007884 9.7e-09 63.9 52 69.2
CARHR129450 Cardamine hirsuta HOM05D011082 ORTHO05D007884 1.3e-08 63.5 109 43.1
DCAR_008279 Daucus carota HOM05D007324 ORTHO05D007884 1.3e-08 63.5 120 43.3
FAN08G0008 Fragaria x ananassa HOM05D007324 ORTHO05D007884 2.8e-08 62.4 77 50.6
Thhalv10017485m.g Eutrema salsugineum HOM05D011082 ORTHO05D007884 3.7e-08 62.0 69 53.6
Lj4g0022663 Lotus japonicus HOM05D007324 ORTHO05D007884 3.7e-08 62.0 126 42.1
Aa31LG9G15320 Aethionema arabicum HOM05D011082 ORTHO05D007884 6.3e-08 61.2 106 45.3
SalBow1G4617 Salvia bowleyana HOM05D007324 ORTHO05D007884 8.2e-08 60.8 117 40.2
SalBow8G4924 Salvia bowleyana HOM05D007324 ORTHO05D007884 8.2e-08 60.8 117 40.2
Peaxi162Scf00460g00044 Petunia axillaris HOM05D007324 ORTHO05D007884 1.1e-07 60.5 112 42.0
vmacro22242 Vaccinium macrocarpon HOM05D007324 ORTHO05D007884 1.1e-07 60.5 95 46.3
Dinv28942 Davidia involucrata HOM05D007324 ORTHO05D007884 1.4e-07 60.1 114 41.2
Aa31LG2G13400 Aethionema arabicum HOM05D007324 ORTHO05D007884 1.5e-06 56.6 116 39.7
ClCG10G001740 Citrullus lanatus HOM05D007324 ORTHO05D007884 1.5e-06 56.6 112 42.0
CDE04G0133 Ceratophyllum demersum HOM05D000001 ORTHO05D000003 4.5e-06 55.1 54 57.4
BcaB02g09441 Brassica carinata HOM05D011082 ORTHO05D007884 5.9e-06 54.7 109 40.4
Thecc.03G229800 Theobroma cacao HOM05D007324 ORTHO05D007884 5.9e-06 54.7 126 38.9


User provided reference genes

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