Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 4.1e-176 621.3 321 100.0
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 2.5e-125 452.6 308 78.9
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 7.9e-119 431.0 311 75.6
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 5.1e-118 428.3 315 74.3
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 5.1e-118 428.3 312 74.7
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.6e-116 423.3 296 76.0
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 2.1e-116 422.9 311 73.6
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 2.8e-116 422.5 315 73.7
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 4.8e-116 421.8 310 72.6
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 4.8e-116 421.8 312 73.4
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 1.1e-115 420.6 310 73.2
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 1.8e-115 419.9 269 81.0
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 4.0e-115 418.7 327 72.2
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 9.0e-115 417.5 305 73.1
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 9.0e-115 417.5 305 73.1
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 1.2e-114 417.2 262 81.3
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 2.0e-114 416.4 294 77.2
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 2.6e-114 416.0 315 72.7
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 1.0e-113 414.1 268 79.9
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 1.7e-113 413.3 301 73.8
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 2.2e-113 412.9 310 72.6
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 2.9e-113 412.5 309 72.2
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 8.4e-113 411.0 283 77.4
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 1.4e-112 410.2 319 70.5
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 2.5e-112 409.5 315 72.1
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 3.2e-112 409.1 319 69.3
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 3.2e-112 409.1 302 72.2
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 3.2e-112 409.1 309 72.2
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 4.2e-112 408.7 312 72.4
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 4.2e-112 408.7 261 81.2
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 7.1e-112 407.9 306 72.2
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 7.1e-112 407.9 301 75.1
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 7.1e-112 407.9 332 69.3
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 9.3e-112 407.5 300 73.0
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 9.3e-112 407.5 344 66.3
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.2e-111 407.1 298 74.8
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 1.2e-111 407.1 319 71.5
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 1.6e-111 406.8 313 71.9
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 4.6e-111 405.2 312 70.8
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 4.6e-111 405.2 308 71.8
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 6.0e-111 404.8 310 70.3
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 6.0e-111 404.8 319 71.2
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.3e-110 403.7 310 70.0
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 3.9e-110 402.1 305 73.1
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 5.1e-110 401.7 304 71.1
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 5.1e-110 401.7 315 68.9
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 5.1e-110 401.7 263 80.2
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 8.7e-110 401.0 314 71.3
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.1e-109 400.6 312 68.6
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 1.1e-109 400.6 312 70.2
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 3.3e-109 399.1 310 70.0
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 4.3e-109 398.7 310 70.6
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 5.7e-109 398.3 318 67.6
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 5.7e-109 398.3 312 67.9
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 5.7e-109 398.3 318 67.6
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 5.7e-109 398.3 318 67.0
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 5.7e-109 398.3 312 68.3
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 7.4e-109 397.9 321 68.5
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 1.3e-108 397.1 319 67.7
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 1.6e-108 396.7 320 67.5
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.6e-108 396.7 267 77.2
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.6e-108 396.7 317 67.5
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 2.2e-108 396.4 318 67.6
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 2.2e-108 396.4 320 67.5
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 2.2e-108 396.4 304 73.0
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 3.7e-108 395.6 309 69.6
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 3.7e-108 395.6 310 72.6
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 4.8e-108 395.2 268 76.5
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 8.2e-108 394.4 299 73.6
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 8.2e-108 394.4 320 66.6
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 1.4e-107 393.7 306 70.9
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 1.4e-107 393.7 320 67.2
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 1.4e-107 393.7 261 78.5
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 1.8e-107 393.3 318 67.3
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 1.8e-107 393.3 261 78.9
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 2.4e-107 392.9 320 66.6
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 4.1e-107 392.1 319 66.8
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 4.1e-107 392.1 309 70.9
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 5.3e-107 391.7 278 74.1
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 2.0e-106 389.8 316 67.7
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 4.5e-106 388.7 301 71.4
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.7e-105 386.7 307 67.1
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 2.2e-105 386.3 333 65.2
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 5.0e-105 385.2 297 69.7
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 6.5e-105 384.8 262 76.0
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 1.1e-104 384.0 234 81.6
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 1.1e-104 384.0 265 75.8
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 2.5e-104 382.9 307 67.8
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 3.2e-104 382.5 276 72.1
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 7.2e-104 381.3 285 73.3
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 7.9e-103 377.9 233 81.5
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 1.8e-102 376.7 231 82.3
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 3.0e-102 375.9 286 71.0
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 4.3e-101 372.1 241 79.3
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 5.7e-101 371.7 312 65.7
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 9.7e-101 370.9 245 77.6
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.2e-100 369.8 245 77.1
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 2.8e-100 369.4 262 72.9
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 2.4e-99 366.3 306 65.0
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 2.0e-98 363.2 312 61.9
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.3e-97 360.5 256 74.2
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 6.5e-97 358.2 364 56.6
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 4.2e-96 355.5 305 66.2
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 4.2e-96 355.5 293 64.5
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 5.5e-96 355.1 248 74.6
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 7.2e-96 354.8 283 65.4
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.2e-95 354.0 229 74.7
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.7e-95 352.8 354 57.9
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 4.7e-95 352.1 269 67.3
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 6.1e-95 351.7 295 63.4
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 6.1e-95 351.7 229 75.1
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 1.4e-94 350.5 220 76.4
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 2.3e-94 349.7 220 76.8
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 2.3e-94 349.7 254 70.1
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 2.3e-94 349.7 254 70.1
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 8.8e-94 347.8 220 76.8
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 8.8e-94 347.8 220 76.4
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 8.8e-94 347.8 220 76.8
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 8.8e-94 347.8 220 76.8
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 1.5e-93 347.1 265 70.2
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 2.0e-93 346.7 334 57.8
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 4.4e-93 345.5 263 71.5
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 5.7e-93 345.1 370 54.6
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 7.4e-93 344.7 225 74.2
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 7.4e-93 344.7 225 74.2
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 2.2e-92 343.2 302 61.9
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 7.0e-91 338.2 275 68.0
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.0e-90 336.7 275 67.6
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 1.7e-84 317.0 174 90.8
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 2.0e-82 310.1 299 56.5
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 5.5e-80 302.0 247 64.8
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 6.8e-78 295.0 256 66.0
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 2.0e-77 293.5 254 65.7
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 1.6e-74 283.9 239 66.5
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 2.0e-69 266.9 217 66.4
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 7.5e-69 265.0 146 90.4
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 5.5e-64 248.8 211 59.7
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 1.6e-63 247.3 214 56.5
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 6.1e-63 245.4 211 58.3
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 6.8e-62 241.9 162 77.8
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 1.2e-47 194.5 196 49.0
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.2e-26 124.8 169 47.9
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-26 124.8 112 59.8
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 3.5e-26 123.2 81 74.1
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 2.5e-24 117.1 81 71.6
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 5.6e-24 115.9 161 41.0
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 5.6e-24 115.9 112 58.0
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 2.8e-23 113.6 68 82.4
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 1.4e-22 111.3 120 49.2
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 3.4e-21 106.7 53 96.2
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 6.4e-20 102.4 141 42.6
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 7.1e-19 99.0 74 63.5
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 4.6e-18 96.3 57 84.2
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.0e-17 95.1 55 83.6
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 1.5e-16 91.3 57 82.5
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 3.6e-15 86.7 53 75.5
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 1.2e-13 81.6 55 72.7
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 2.0e-13 80.9 69 59.4
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 1.8e-09 67.8 70 45.7
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-08 65.1 48 66.7
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 7.4e-08 62.4 36 80.6
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 2.1e-07 60.8 49 59.2
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 8.1e-07 58.9 28 96.4
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 8.1e-07 58.9 28 96.4
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 8.1e-07 58.9 28 96.4
BraA06t26504Z Brassica rapa HOM05D004120 ORTHO05D033838 6.9e-06 55.8 29 86.2


User provided reference genes

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