Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 3.3e-259 897.9 468 100.0
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 4.9e-178 628.2 463 69.5
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.3e-167 593.6 455 69.9
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.3e-165 587.0 472 68.0
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 3.8e-162 575.5 481 65.5
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.9e-161 573.2 467 65.3
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 4.6e-160 568.5 472 67.2
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.1e-158 563.9 461 66.6
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.9e-158 563.1 475 65.1
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 5.8e-155 551.6 464 63.8
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 2.2e-154 549.7 465 63.9
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 4.9e-154 548.5 468 62.6
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 3.2e-153 545.8 469 62.7
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 1.6e-152 543.5 458 63.8
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 2.1e-152 543.1 469 63.3
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 4.6e-152 542.0 465 62.6
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 6.7e-151 538.1 453 64.7
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.5e-150 537.0 466 63.3
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 4.3e-150 535.4 468 62.2
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 7.4e-150 534.6 464 62.3
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.3e-149 533.9 469 61.4
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.4e-148 530.4 469 60.8
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.4e-148 530.4 464 62.3
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 3.1e-148 529.3 475 60.2
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.3e-146 523.9 469 59.3
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 2.2e-146 523.1 469 60.3
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 2.2e-146 523.1 469 59.5
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 3.8e-146 522.3 470 60.4
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 9.3e-145 517.7 464 61.6
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.2e-144 517.3 469 59.3
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 1.3e-143 513.8 466 59.9
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.8e-143 513.5 459 60.6
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 3.0e-143 512.7 435 64.8
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 5.1e-143 511.9 473 59.2
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 5.1e-143 511.9 463 59.4
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 8.7e-143 511.1 451 62.1
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 2.5e-142 509.6 466 58.4
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 3.3e-142 509.2 467 58.9
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 3.3e-142 509.2 467 58.9
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 2.8e-141 506.1 469 56.7
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 8.2e-141 504.6 467 57.0
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 1.1e-140 504.2 467 57.4
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.1e-140 504.2 467 58.0
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 1.4e-140 503.8 468 58.5
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.4e-140 503.1 469 56.3
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.1e-140 502.7 471 58.2
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 4.1e-140 502.3 466 58.6
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 6.9e-140 501.5 471 58.0
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 1.2e-139 500.7 463 60.0
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 1.3e-138 497.3 471 57.7
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.7e-138 496.9 422 62.8
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 2.2e-138 496.5 471 58.0
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 4.2e-137 492.3 471 57.3
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 4.2e-137 492.3 472 60.6
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 2.1e-136 490.0 473 56.7
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 2.1e-136 490.0 468 56.6
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 2.1e-136 490.0 693 45.2
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.0e-135 487.6 475 57.9
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.0e-135 486.1 475 57.9
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 1.8e-132 476.9 438 60.5
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 2.4e-132 476.5 411 60.8
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.2e-131 474.2 465 54.6
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 1.5e-131 473.8 465 55.9
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 3.4e-131 472.6 470 58.9
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 3.8e-130 469.2 472 56.6
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 5.0e-130 468.8 421 58.9
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 6.1e-128 461.8 464 53.7
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 3.0e-127 459.5 472 54.2
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 3.0e-127 459.5 376 64.6
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 5.1e-127 458.8 377 64.2
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 7.4e-126 454.9 464 56.5
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 2.0e-123 446.8 467 53.3
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.0e-123 446.8 463 53.8
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 3.8e-122 442.6 393 62.3
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 9.4e-121 438.0 435 55.4
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.8e-117 425.6 502 51.2
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 8.2e-117 424.9 549 45.5
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 5.3e-116 422.2 386 60.9
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.6e-115 419.9 454 53.3
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 2.2e-114 416.8 391 55.5
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 3.0e-111 406.4 539 47.3
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 5.2e-111 405.6 463 52.1
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 3.1e-108 396.4 321 63.6
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 5.4e-108 395.6 291 68.4
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 7.0e-108 395.2 324 63.9
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 7.0e-108 395.2 510 49.6
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 5.9e-107 392.1 413 52.8
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 2.2e-106 390.2 477 48.4
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 8.5e-106 388.3 369 57.7
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 1.2e-104 384.4 423 53.0
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 8.8e-103 378.3 357 56.9
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 5.7e-102 375.6 291 66.3
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 2.8e-101 373.2 411 51.8
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.4e-100 370.9 465 48.2
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.4e-100 370.9 494 45.7
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 5.4e-100 369.0 373 56.3
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 1.7e-98 364.0 491 45.6
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 3.0e-95 353.2 285 62.5
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 2.2e-93 347.1 356 54.2
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 2.3e-90 337.0 483 44.5
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 8.6e-90 335.1 347 53.6
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 9.5e-89 331.6 264 64.0
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.8e-87 327.4 254 65.7
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.2e-87 325.9 320 57.5
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 3.7e-85 319.7 293 57.7
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 5.6e-81 305.8 377 47.2
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 1.1e-76 291.6 229 64.2
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.5e-73 281.2 239 60.7
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 2.5e-73 280.4 520 38.1
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 3.6e-72 276.6 446 40.4
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 2.6e-70 270.4 380 44.7
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 8.4e-69 265.4 327 52.3
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.5e-67 260.0 169 74.0
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.4e-62 243.4 307 49.2
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 2.9e-61 240.4 296 47.3
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.9e-45 187.2 159 62.9
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.4e-44 184.1 428 34.3
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 8.7e-42 175.6 559 29.7
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.3e-40 171.8 118 69.5
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.3e-40 171.8 212 52.4
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 4.0e-39 166.8 176 54.5
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 3.2e-36 157.1 563 29.5
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.3e-32 142.9 166 53.0
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 5.3e-31 139.8 382 31.4
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.8e-26 124.8 147 49.0
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.9e-20 104.8 127 47.2
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.5e-20 104.4 145 44.1
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 3.6e-19 100.5 141 48.2
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 4.6e-19 100.1 116 52.6
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 3.0e-18 97.4 84 63.1
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 3.0e-18 97.4 108 52.8
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-17 95.5 72 62.5
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-17 95.5 72 62.5
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.5e-17 94.4 68 70.6
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.5e-17 94.4 72 61.1
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 4.3e-17 93.6 125 43.2
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.2e-16 91.3 72 61.1
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 2.6e-14 84.3 54 75.9
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 5.5e-12 76.6 81 58.0
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 1.3e-08 65.5 82 45.1
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 4.8e-08 63.5 46 65.2
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-07 62.4 44 59.1
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 2.0e-06 58.2 32 84.4
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 3.5e-06 57.4 44 59.1


User provided reference genes

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